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Items: 25

1.

A standardized framing for reporting protein identifications in mzIdentML 1.2.

Seymour SL, Farrah T, Binz PA, Chalkley RJ, Cottrell JS, Searle BC, Tabb DL, Vizcaíno JA, Prieto G, Uszkoreit J, Eisenacher M, Martínez-Bartolomé S, Ghali F, Jones AR.

Proteomics. 2014 Nov;14(21-22):2389-99. doi: 10.1002/pmic.201400080. Epub 2014 Sep 23.

2.

Proteome informatics research group (iPRG)_2012: a study on detecting modified peptides in a complex mixture.

Chalkley RJ, Bandeira N, Chambers MC, Clauser KR, Cottrell JS, Deutsch EW, Kapp EA, Lam HH, McDonald WH, Neubert TA, Sun RX.

Mol Cell Proteomics. 2014 Jan;13(1):360-71. doi: 10.1074/mcp.M113.032813. Epub 2013 Oct 31.

3.

Response to: the problem with peptide presumption and low Mascot scoring.

Cottrell JS, Creasy DM.

J Proteome Res. 2011 Nov 4;10(11):5272-3. doi: 10.1021/pr200726c. Epub 2011 Sep 29.

PMID:
21942731
4.

Protein identification using MS/MS data.

Cottrell JS.

J Proteomics. 2011 Sep 6;74(10):1842-51. doi: 10.1016/j.jprot.2011.05.014. Epub 2011 May 15.

5.

Hierarchical clustering of shotgun proteomics data.

Koskinen VR, Emery PA, Creasy DM, Cottrell JS.

Mol Cell Proteomics. 2011 Jun;10(6):M110.003822. doi: 10.1074/mcp.M110.003822. Epub 2011 Mar 29.

6.

Biomolecular characterization and protein sequences of the Campanian hadrosaur B. canadensis.

Schweitzer MH, Zheng W, Organ CL, Avci R, Suo Z, Freimark LM, Lebleu VS, Duncan MB, Vander Heiden MG, Neveu JM, Lane WS, Cottrell JS, Horner JR, Cantley LC, Kalluri R, Asara JM.

Science. 2009 May 1;324(5927):626-31. doi: 10.1126/science.1165069.

7.

Community pharmacy Target Intervention Program to improve aspirin use in persons with diabetes.

Haggerty SA, Cerulli J, Zeolla MM, Cottrell JS, Weck MB, Faragon JJ.

J Am Pharm Assoc (2003). 2005 Jan-Feb;45(1):17-22.

PMID:
15730113
8.

Unimod: Protein modifications for mass spectrometry.

Creasy DM, Cottrell JS.

Proteomics. 2004 Jun;4(6):1534-6.

PMID:
15174123
9.

Error tolerant searching of uninterpreted tandem mass spectrometry data.

Creasy DM, Cottrell JS.

Proteomics. 2002 Oct;2(10):1426-34.

PMID:
12422359
10.

Matching peptide mass spectra to EST and genomic DNA databases.

Choudhary JS, Blackstock WP, Creasy DM, Cottrell JS.

Trends Biotechnol. 2001 Oct;19(10 Suppl):S17-22. Review.

PMID:
11780965
11.

Interrogating the human genome using uninterpreted mass spectrometry data.

Choudhary JS, Blackstock WP, Creasy DM, Cottrell JS.

Proteomics. 2001 May;1(5):651-67. Erratum in: Proteomics 2001 Jun;1(6):796.

PMID:
11678035
12.

Probability-based protein identification by searching sequence databases using mass spectrometry data.

Perkins DN, Pappin DJ, Creasy DM, Cottrell JS.

Electrophoresis. 1999 Dec;20(18):3551-67.

PMID:
10612281
13.

The analysis of myocardial proteins by infrared and ultraviolet laser desorption mass spectrometry.

Sutton CW, Wheeler CH, Sally U, Corbett JM, Cottrell JS, Dunn MJ.

Electrophoresis. 1997 Mar-Apr;18(3-4):424-31.

PMID:
9150921
14.

The identification of electrophoretically separated proteins by peptide mass fingerprinting.

Cottrell JS, Sutton CW.

Methods Mol Biol. 1996;61:67-82. No abstract available.

PMID:
8930866
15.

Peptide sequencing by matrix-assisted laser desorption ionization/time-of-flight mass spectrometry.

Cottrell JS.

Biochem Soc Trans. 1995 Nov;23(4):914-7. No abstract available.

PMID:
8654866
16.

Identification of myocardial proteins from two-dimensional gels by peptide mass fingerprinting.

Sutton CW, Pemberton KS, Cottrell JS, Corbett JM, Wheeler CH, Dunn MJ, Pappin DJ.

Electrophoresis. 1995 Mar;16(3):308-16.

PMID:
7607162
17.

Protein identification by peptide mass fingerprinting.

Cottrell JS.

Pept Res. 1994 May-Jun;7(3):115-24. Review.

PMID:
8081066
18.
19.

Sample immobilization protocols for matrix-assisted laser-desorption mass spectrometry.

Mock KK, Sutton CW, Cottrell JS.

Rapid Commun Mass Spectrom. 1992 Apr;6(4):233-8.

PMID:
1571596
20.

The integration of mass spectrometry into the biochemistry laboratory.

Mock KK, Davey M, Stevenson MP, Cottrell JS.

Biochem Soc Trans. 1991 Nov;19(4):948-53. No abstract available.

PMID:
1794589
21.

The analysis of underivatized oligosaccharides by matrix-assisted laser desorption mass spectrometry.

Mock KK, Davey M, Cottrell JS.

Biochem Biophys Res Commun. 1991 Jun 14;177(2):644-51.

PMID:
1710893
22.

Improved detection limits in an organic mass spectrometer using a combination of matrix free FAB and photodiode array detection.

Taylor LC, Brent DA, Cottrell JS.

Biochem Biophys Res Commun. 1987 May 29;145(1):542-8.

PMID:
3109416
23.

Continuous-flow fast atom bombardment mass spectrometry.

Ashcroft AE, Chapman JR, Cottrell JS.

J Chromatogr. 1987 May 8;394(1):15-20.

PMID:
2439526
24.

Continuous-flow sample probe for fast atom bombardment mass spectrometry.

Caprioli RM, Fan T, Cottrell JS.

Anal Chem. 1986 Dec;58(14):2949-54. No abstract available.

PMID:
3544953
25.

Fast atom bombardment mass spectrometry of bovine proinsulin.

Cottrell JS, Frank BH.

Biochem Biophys Res Commun. 1985 Mar 29;127(3):1032-8.

PMID:
3985950

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