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IFPA meeting 2018 workshop report I: Reproduction and placentation among ocean-living species; placental imaging; epigenetics and extracellular vesicles in pregnancy.

Acharya G, Bartolomei M, Carter AM, Chamley L, Cotton CF, Hasegawa J, Hasegawa Y, Hayakawa S, Kawaguchi M, Konwar C, Magawa S, Miura K, Nishi H, Salomon C, Sato K, Soejima H, Soma H, Sørensen A, Takahashi H, Tomita T, Whittington CM, Yuan V, O'Tierney-Ginn P.

Placenta. 2019 Feb 10. pii: S0143-4004(18)31201-3. doi: 10.1016/j.placenta.2019.02.003. [Epub ahead of print] Review.


Migration and young women's access to maternal healthcare in sub-Saharan Africa.

Cotton C.

Health Place. 2019 Jan;55:136-144. doi: 10.1016/j.healthplace.2018.12.006. Epub 2018 Dec 19.


E. coli survival duration in manure-amended soils is affected by spatiotemporal, agricultural, and weather factors: a multi-season, multi-site field study in the Mid-Atlantic U.S.

Sharma M, Millner PD, Hashem F, Vinyard BT, East CL, Handy ET, White K, Stonebraker R, Cotton CP.

Appl Environ Microbiol. 2018 Dec 14. pii: AEM.02392-18. doi: 10.1128/AEM.02392-18. [Epub ahead of print]


Description of a new deep-water dogfish shark from Hawaii, with comments on the Squalusmitsukurii species complex in the West Pacific.

Daly-Engel TS, Koch A, Anderson JM, Cotton CF, Rubbs RD.

Zookeys. 2018 Nov 21;(798):135-157. doi: 10.3897/zookeys.798.28375. eCollection 2018.


Design and in vitro realization of carbon-conserving photorespiration.

Trudeau DL, Edlich-Muth C, Zarzycki J, Scheffen M, Goldsmith M, Khersonsky O, Avizemer Z, Fleishman SJ, Cotton CAR, Erb TJ, Tawfik DS, Bar-Even A.

Proc Natl Acad Sci U S A. 2018 Dec 4;115(49):E11455-E11464. doi: 10.1073/pnas.1812605115. Epub 2018 Nov 20.


Capitalizing on the heterogeneous effects of CFTR nonsense and frameshift variants to inform therapeutic strategy for cystic fibrosis.

Sharma N, Evans TA, Pellicore MJ, Davis E, Aksit MA, McCague AF, Joynt AT, Lu Z, Han ST, Anzmann AF, Lam AN, Thaxton A, West N, Merlo C, Gottschalk LB, Raraigh KS, Sosnay PR, Cotton CU, Cutting GR.

PLoS Genet. 2018 Nov 16;14(11):e1007723. doi: 10.1371/journal.pgen.1007723. eCollection 2018 Nov.


Quantum chemistry reveals thermodynamic principles of redox biochemistry.

Jinich A, Flamholz A, Ren H, Kim SJ, Sanchez-Lengeling B, Cotton CAR, Noor E, Aspuru-Guzik A, Bar-Even A.

PLoS Comput Biol. 2018 Oct 24;14(10):e1006471. doi: 10.1371/journal.pcbi.1006471. eCollection 2018 Oct.


Artificial pathway emergence in central metabolism from three recursive phosphoketolase reactions.

Krüsemann JL, Lindner SN, Dempfle M, Widmer J, Arrivault S, Debacker M, He H, Kubis A, Chayot R, Anissimova M, Marlière P, Cotton CAR, Bar-Even A.

FEBS J. 2018 Dec;285(23):4367-4377. doi: 10.1111/febs.14682. Epub 2018 Nov 10.


Squalus clarkae sp. nov., a new dogfish shark from the Northwest Atlantic and Gulf of Mexico, with comments on the Squalus mitsukurii species complex.

Pfleger MO, Grubbs RD, Cotton CF, Daly-Engel TS.

Zootaxa. 2018 Jul 9;4444(2):101-119. doi: 10.11646/zootaxa.4444.2.1.


A sheep model of cystic fibrosis generated by CRISPR/Cas9 disruption of the CFTR gene.

Fan Z, Perisse IV, Cotton CU, Regouski M, Meng Q, Domb C, Van Wettere AJ, Wang Z, Harris A, White KL, Polejaeva IA.

JCI Insight. 2018 Oct 4;3(19). pii: 123529. doi: 10.1172/jci.insight.123529. [Epub ahead of print]


Linaclotide improves gastrointestinal transit in cystic fibrosis mice by inhibiting sodium/hydrogen exchanger 3.

McHugh DR, Cotton CU, Moss FJ, Vitko M, Valerio DM, Kelley TJ, Hao S, Jafri A, Drumm ML, Boron WF, Stern RC, McBennett K, Hodges CA.

Am J Physiol Gastrointest Liver Physiol. 2018 Nov 1;315(5):G868-G878. doi: 10.1152/ajpgi.00261.2017. Epub 2018 Aug 17.


Increased sharing and collaboration can decrease barriers to progress in Microbiology.

van den Berg EM, van Veen M, Cotton C, Oudega B.

FEMS Microbiol Lett. 2018 Sep 1;365(17). doi: 10.1093/femsle/fny172. No abstract available.


Electrochemical measurement of membrane cholesterol correlates with CFTR function and is HDAC6-dependent.

Lu B, Li L, Schneider M, Hodges CA, Cotton CU, Burgess JD, Kelley TJ.

J Cyst Fibros. 2018 Jun 22. pii: S1569-1993(18)30630-1. doi: 10.1016/j.jcf.2018.06.005. [Epub ahead of print]


CFTR modulator theratyping: Current status, gaps and future directions.

Clancy JP, Cotton CU, Donaldson SH, Solomon GM, VanDevanter DR, Boyle MP, Gentzsch M, Nick JA, Illek B, Wallenburg JC, Sorscher EJ, Amaral MD, Beekman JM, Naren AP, Bridges RJ, Thomas PJ, Cutting G, Rowe S, Durmowicz AG, Mense M, Boeck KD, Skach W, Penland C, Joseloff E, Bihler H, Mahoney J, Borowitz D, Tuggle KL.

J Cyst Fibros. 2019 Jan;18(1):22-34. doi: 10.1016/j.jcf.2018.05.004. Epub 2018 Jun 20. Review.


A G542X cystic fibrosis mouse model for examining nonsense mutation directed therapies.

McHugh DR, Steele MS, Valerio DM, Miron A, Mann RJ, LePage DF, Conlon RA, Cotton CU, Drumm ML, Hodges CA.

PLoS One. 2018 Jun 20;13(6):e0199573. doi: 10.1371/journal.pone.0199573. eCollection 2018.


Higher Rate of Barrett's Detection in the First Year After Successful Endoscopic Therapy: Meta-analysis.

Sawas T, Iyer PG, Alsawas M, Cotton CC, Leggett CL, Murad HM, Wang KK, Shaheen NJ, Katzka DA.

Am J Gastroenterol. 2018 Jul;113(7):959-971. doi: 10.1038/s41395-018-0090-z. Epub 2018 Jun 14. Review.


A Modular Strategy to Engineer Complex Tissues and Organs.

Dikina AD, Alt DS, Herberg S, McMillan A, Strobel HA, Zheng Z, Cao M, Lai BP, Jeon O, Petsinger VI, Cotton CU, Rolle MW, Alsberg E.

Adv Sci (Weinh). 2018 Feb 14;5(5):1700402. doi: 10.1002/advs.201700402. eCollection 2018 May.


Nonparametric analysis of dependently interval-censored failure time data.

Zhu Y, Lawless JF, Cotton CA.

Stat Med. 2018 Sep 20;37(21):3091-3105. doi: 10.1002/sim.7805. Epub 2018 May 15.


Development of Evidence-Based Surveillance Intervals After Radiofrequency Ablation of Barrett's Esophagus.

Cotton CC, Haidry R, Thrift AP, Lovat L, Shaheen NJ.

Gastroenterology. 2018 Aug;155(2):316-326.e6. doi: 10.1053/j.gastro.2018.04.011. Epub 2018 Apr 13.


A randomized controlled trial to evaluate the Make Safe Happen® app-a mobile technology-based safety behavior change intervention for increasing parents' safety knowledge and actions.

McKenzie LB, Roberts KJ, Clark R, McAdams R, Abdel-Rasoul M, Klein EG, Keim SA, Kristel O, Szymanski A, Cotton CG, Shields WC.

Inj Epidemiol. 2018 Mar 12;5(1):5. doi: 10.1186/s40621-018-0133-3.


Who Helps Single Mothers in Nairobi? The Role of Kin Support.

Clark S, Madhavan S, Cotton C, Beguy D, Kabiru C.

J Marriage Fam. 2017 Aug;79(4):1186-1204. doi: 10.1111/jomf.12404. Epub 2017 Apr 28.


Molecular characterization of gene regulatory networks in primary human tracheal and bronchial epithelial cells.

Gillen AE, Yang R, Cotton CU, Perez A, Randell SH, Leir SH, Harris A.

J Cyst Fibros. 2018 Jul;17(4):444-453. doi: 10.1016/j.jcf.2018.01.009. Epub 2018 Feb 17.


Polysomnographic Oxygen Saturation Findings for Preteen Children versus Adolescents.

Wiebracht ND, He S, Cotton C, Meinzen-Derr J, Shott G, Smith DF, McConnell KB, Ishman SL.

Otolaryngol Head Neck Surg. 2018 Jan;158(1):187-193. doi: 10.1177/0194599817733687. Epub 2017 Dec 5.


Optimal Histologic Cutpoints for Treatment Response in Patients With Eosinophilic Esophagitis: Analysis of Data From a Prospective Cohort Study.

Reed CC, Wolf WA, Cotton CC, Rusin S, Perjar I, Hollyfield J, Woosley JT, Shaheen NJ, Dellon ES.

Clin Gastroenterol Hepatol. 2018 Feb;16(2):226-233.e2. doi: 10.1016/j.cgh.2017.09.046. Epub 2017 Oct 4.


Reinforcing carbon fixation: CO2 reduction replacing and supporting carboxylation.

Cotton CA, Edlich-Muth C, Bar-Even A.

Curr Opin Biotechnol. 2018 Feb;49:49-56. doi: 10.1016/j.copbio.2017.07.014. Epub 2017 Aug 10. Review.


A model averaging approach for estimating propensity scores by optimizing balance.

Xie Y, Zhu Y, Cotton CA, Wu P.

Stat Methods Med Res. 2017 Jan 1:962280217715487. doi: 10.1177/0962280217715487. [Epub ahead of print]


Six-Food Elimination Diet and Topical Steroids are Effective for Eosinophilic Esophagitis: A Meta-Regression.

Cotton CC, Eluri S, Wolf WA, Dellon ES.

Dig Dis Sci. 2017 Sep;62(9):2408-2420. doi: 10.1007/s10620-017-4642-7. Epub 2017 Jun 12. Review.


Late Recurrence of Barrett's Esophagus After Complete Eradication of Intestinal Metaplasia is Rare: Final Report From Ablation in Intestinal Metaplasia Containing Dysplasia Trial.

Cotton CC, Wolf WA, Overholt BF, Li N, Lightdale CJ, Wolfsen HC, Pasricha S, Wang KK, Shaheen NJ; AIM Dysplasia Trial Group.

Gastroenterology. 2017 Sep;153(3):681-688.e2. doi: 10.1053/j.gastro.2017.05.044. Epub 2017 Jun 1.


Allergic Contact Dermatitis Due to Methylisothiazolinone in a Young Girl's Laundry Detergent.

Cotton CH, Duah CG, Matiz C.

Pediatr Dermatol. 2017 Jul;34(4):486-487. doi: 10.1111/pde.13122. Epub 2017 May 19.


Editorial: FEMS Letters: investing in science for 40 years.

Cotton CM, Prosser JI.

FEMS Microbiol Lett. 2017 May 1;364(10). doi: 10.1093/femsle/fnx095. No abstract available.


A visual analogue scale and a Likert scale are simple and responsive tools for assessing dysphagia in eosinophilic oesophagitis.

Reed CC, Wolf WA, Cotton CC, Dellon ES.

Aliment Pharmacol Ther. 2017 Jun;45(11):1443-1448. doi: 10.1111/apt.14061. Epub 2017 Mar 31.


Estimation of parametric failure time distributions based on interval-censored data with irregular dependent follow-up.

Zhu Y, Lawless JF, Cotton CA.

Stat Med. 2017 May 10;36(10):1548-1567. doi: 10.1002/sim.7234. Epub 2017 Jan 29.


Synchrony Detection of Linguistic Stimuli in the Presence of Faces: Neuropsychological Implications for Language Development in ASD.

Patten E, Labban JD, Casenhiser DM, Cotton CL.

Dev Neuropsychol. 2016 Jul - Dec;41(5-8):362-374. doi: 10.1080/87565641.2016.1243113. Epub 2017 Jan 6.


Patients With Barrett's Esophagus and Confirmed Persistent Low-Grade Dysplasia Are at Increased Risk for Progression to Neoplasia.

Duits LC, van der Wel MJ, Cotton CC, Phoa KN, Ten Kate FJW, Seldenrijk CA, Offerhaus GJA, Visser M, Meijer SL, Mallant-Hent RC, Krishnadath KK, Pouw RE, Tijssen JGP, Shaheen NJ, Bergman JJGHM.

Gastroenterology. 2017 Apr;152(5):993-1001.e1. doi: 10.1053/j.gastro.2016.12.008. Epub 2016 Dec 22.


Cost Utility Analysis of Topical Steroids Compared With Dietary Elimination for Treatment of Eosinophilic Esophagitis.

Cotton CC, Erim D, Eluri S, Palmer SH, Green DJ, Wolf WA, Runge TM, Wheeler S, Shaheen NJ, Dellon ES.

Clin Gastroenterol Hepatol. 2017 Jun;15(6):841-849.e1. doi: 10.1016/j.cgh.2016.11.032. Epub 2016 Dec 7.


Association Between Body Mass Index and Clinical and Endoscopic Features of Eosinophilic Esophagitis.

Wolf WA, Piazza NA, Gebhart JH, Rusin S, Covey S, Higgins LL, Beitia R, Speck O, Woodward K, Cotton CC, Runge TM, Eluri S, Woosley JT, Shaheen NJ, Dellon ES.

Dig Dis Sci. 2017 Jan;62(1):143-149. doi: 10.1007/s10620-016-4357-1. Epub 2016 Oct 24.


Hydrocarbons Are Essential for Optimal Cell Size, Division, and Growth of Cyanobacteria.

Lea-Smith DJ, Ortiz-Suarez ML, Lenn T, Nürnberg DJ, Baers LL, Davey MP, Parolini L, Huber RG, Cotton CA, Mastroianni G, Bombelli P, Ungerer P, Stevens TJ, Smith AG, Bond PJ, Mullineaux CW, Howe CJ.

Plant Physiol. 2016 Nov;172(3):1928-1940. Epub 2016 Oct 5.


Clinical Outcomes Following Recurrence of Intestinal Metaplasia After Successful Treatment of Barrett's Esophagus With Radiofrequency Ablation.

Guthikonda A, Cotton CC, Madanick RD, Spacek MB, Moist SE, Ferrell K, Dellon ES, Shaheen NJ.

Am J Gastroenterol. 2017 Jan;112(1):87-94. doi: 10.1038/ajg.2016.451. Epub 2016 Oct 11.


Causes and Outcomes of Esophageal Perforation in Eosinophilic Esophagitis.

Runge TM, Eluri S, Cotton CC, Burk CM, Woosley JT, Shaheen NJ, Dellon ES.

J Clin Gastroenterol. 2017 Oct;51(9):805-813. doi: 10.1097/MCG.0000000000000718.


Microbiology survey shows authors have most to gain from peer review.

Cotton C, Bowater L, Bowater RP.

FEMS Microbiol Lett. 2016 Sep;363(18). pii: fnw205. Epub 2016 Sep 11. No abstract available.


Induction of Therapeutic Hypothermia During Out-of-Hospital Cardiac Arrest Using a Rapid Infusion of Cold Saline: The RINSE Trial (Rapid Infusion of Cold Normal Saline).

Bernard SA, Smith K, Finn J, Hein C, Grantham H, Bray JE, Deasy C, Stephenson M, Williams TA, Straney LD, Brink D, Larsen R, Cotton C, Cameron P.

Circulation. 2016 Sep 13;134(11):797-805. doi: 10.1161/CIRCULATIONAHA.116.021989. Epub 2016 Aug 25.


Diamondoid Structure in a Metal-Organic Framework of Fe4 Single-Molecule Magnets.

Rigamonti L, Cotton C, Nava A, Lang H, Rüffer T, Perfetti M, Sorace L, Barra AL, Lan Y, Wernsdorfer W, Sessoli R, Cornia A.

Chemistry. 2016 Sep 12;22(38):13705-14. doi: 10.1002/chem.201601383. Epub 2016 Jun 29.


Ibuprofen regulation of microtubule dynamics in cystic fibrosis epithelial cells.

Rymut SM, Kampman CM, Corey DA, Endres T, Cotton CU, Kelley TJ.

Am J Physiol Lung Cell Mol Physiol. 2016 Aug 1;311(2):L317-27. doi: 10.1152/ajplung.00126.2016. Epub 2016 Jun 17.


Hormonal Contraception Use is Common Among Patients with Inflammatory Bowel Diseases and an Elevated Risk of Deep Vein Thrombosis.

Cotton CC, Baird D, Sandler RS, Long MD.

Inflamm Bowel Dis. 2016 Jul;22(7):1631-8. doi: 10.1097/MIB.0000000000000800.


Survival and Persistence of Nonpathogenic Escherichia coli and Attenuated Escherichia coli O157:H7 in Soils Amended with Animal Manure in a Greenhouse Environment.

Sharma M, Millner PD, Hashem F, Camp M, Whyte C, Graham L, Cotton CP.

J Food Prot. 2016 Jun;79(6):913-21. doi: 10.4315/0362-028X.JFP-15-421. Erratum in: J Food Prot. 2016 Aug;79(8):1302.


Muscle glycogen utilisation during Rugby match play: Effects of pre-game carbohydrate.

Bradley WJ, Morehen JC, Haigh J, Clarke J, Donovan TF, Twist C, Cotton C, Shepherd S, Cocks M, Sharma A, Impey SG, Cooper RG, Maclaren DP, Morton JP, Close GL.

J Sci Med Sport. 2016 Dec;19(12):1033-1038. doi: 10.1016/j.jsams.2016.03.008. Epub 2016 Apr 22.


Evaluation of Histologic Cutpoints for Treatment Response in Eosinophilic Esophagitis.

Wolf WA, Cotton CC, Green DJ, Hughes JT, Woosley JT, Shaheen NJ, Dellon ES.

J Gastroenterol Hepatol Res. 2015 Oct 1;4(10):1780-1787. Epub 2015 Oct 21.


Impact of Early Breast Cancer Screening on Mortality Among Young Survivors of Childhood Hodgkin's Lymphoma.

Hodgson DC, Cotton C, Crystal P, Nathan PC.

J Natl Cancer Inst. 2016 Mar 1;108(7). doi: 10.1093/jnci/djw010. Print 2016 Jul. Erratum in: J Natl Cancer Inst. 2016 Apr;108(4). pii: djw102. doi: 10.1093/jnci/djw102.


Critical assessment and ramifications of a purported marine trophic cascade.

Grubbs RD, Carlson JK, Romine JG, Curtis TH, McElroy WD, McCandless CT, Cotton CF, Musick JA.

Sci Rep. 2016 Feb 15;6:20970. doi: 10.1038/srep20970.


Skeletal muscle mass and composition during mammalian hibernation.

Cotton CJ.

J Exp Biol. 2016 Jan;219(Pt 2):226-34. doi: 10.1242/jeb.125401. Review.

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