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Items: 1 to 50 of 215

1.

Mass spectrometric phosphoproteome analysis of HIV-infected brain reveals novel phosphorylation sites and differential phosphorylation patterns.

Uzasci L, Auh S, Cotter RJ, Nath A.

Proteomics Clin Appl. 2016 Feb;10(2):126-35. doi: 10.1002/prca.201400134. Epub 2015 Aug 12.

2.

Application of quantitative proteomics to the integrated analysis of the ubiquitylated and global proteomes of xenograft tumor tissues.

Thomas SN, Zhang H, Cotter RJ.

Clin Proteomics. 2015 May 20;12(1):14. doi: 10.1186/s12014-015-9086-5. eCollection 2015.

3.

Identification of SUMO-2/3-modified proteins associated with mitotic chromosomes.

Cubeñas-Potts C, Srikumar T, Lee C, Osula O, Subramonian D, Zhang XD, Cotter RJ, Raught B, Matunis MJ.

Proteomics. 2015 Feb;15(4):763-72. doi: 10.1002/pmic.201400400. Epub 2015 Jan 7.

4.

Identification of nitrated immunoglobulin variable regions in the HIV-infected human brain: implications in HIV infection and immune response.

Uzasci L, Bianchet MA, Cotter RJ, Nath A.

J Proteome Res. 2014 Mar 7;13(3):1614-23. doi: 10.1021/pr401117m. Epub 2014 Jan 30.

5.

Automethylation activities within the mixed lineage leukemia-1 (MLL1) core complex reveal evidence supporting a "two-active site" model for multiple histone H3 lysine 4 methylation.

Patel A, Vought VE, Swatkoski S, Viggiano S, Howard B, Dharmarajan V, Monteith KE, Kupakuwana G, Namitz KE, Shinsky SA, Cotter RJ, Cosgrove MS.

J Biol Chem. 2014 Jan 10;289(2):868-84. doi: 10.1074/jbc.M113.501064. Epub 2013 Nov 14.

6.

Using glycinylation, a chemical derivatization technique, for the quantitation of ubiquitinated proteins.

Fiedler KL, Cotter RJ.

Anal Chem. 2013 Jun 18;85(12):5827-34. doi: 10.1021/ac400398s. Epub 2013 May 30.

7.

A quantitative analysis of histone methylation and acetylation isoforms from their deuteroacetylated derivatives: application to a series of knockout mutants.

Fiedler KL, Bheda P, Dai J, Boeke JD, Wolberger C, Cotter RJ.

J Mass Spectrom. 2013 May;48(5):608-15. doi: 10.1002/jms.3198.

8.

High energy collisions on tandem time-of-flight mass spectrometers.

Cotter RJ.

J Am Soc Mass Spectrom. 2013 May;24(5):657-74. doi: 10.1007/s13361-012-0518-4. Epub 2013 Mar 22.

9.

Advances in membrane proteomics and cancer biomarker discovery: current status and future perspective.

Shukla HD, Vaitiekunas P, Cotter RJ.

Proteomics. 2012 Oct;12(19-20):3085-104. doi: 10.1002/pmic.201100519. Epub 2012 Sep 19. Review.

PMID:
22890602
10.

Development of protein biomarkers in cerebrospinal fluid for secondary progressive multiple sclerosis using selected reaction monitoring mass spectrometry (SRM-MS).

Jia Y, Wu T, Jelinek CA, Bielekova B, Chang L, Newsome S, Gnanapavan S, Giovannoni G, Chen D, Calabresi PA, Nath A, Cotter RJ.

Clin Proteomics. 2012 Jul 30;9(1):9. doi: 10.1186/1559-0275-9-9.

11.
12.

Robust two-dimensional separation of intact proteins for bottom-up tandem mass spectrometry of the human CSF proteome.

Bora A, Anderson C, Bachani M, Nath A, Cotter RJ.

J Proteome Res. 2012 Jun 1;11(6):3143-9. doi: 10.1021/pr300057v. Epub 2012 May 11.

13.

Biotinylation of lysine method identifies acetylated histone H3 lysine 79 in Saccharomyces cerevisiae as a substrate for Sir2.

Bheda P, Swatkoski S, Fiedler KL, Boeke JD, Cotter RJ, Wolberger C.

Proc Natl Acad Sci U S A. 2012 Apr 17;109(16):E916-25. doi: 10.1073/pnas.1121471109. Epub 2012 Apr 2.

14.

Analysis of Histone Modifications from Tryptic Peptides of Deuteroacetylated Isoforms.

Hersman E, Nelson DM, Griffith WP, Jelinek C, Cotter RJ.

Int J Mass Spectrom. 2012 Feb 15;312:5-16.

15.

Azalysine analogues as probes for protein lysine deacetylation and demethylation.

Dancy BC, Ming SA, Papazyan R, Jelinek CA, Majumdar A, Sun Y, Dancy BM, Drury WJ 3rd, Cotter RJ, Taverna SD, Cole PA.

J Am Chem Soc. 2012 Mar 21;134(11):5138-48. doi: 10.1021/ja209574z. Epub 2012 Mar 12.

16.

Carbon nanotube electron ionization source for portable mass spectrometry.

Evans-Nguyen T, Parker CB, Hammock C, Monica AH, Adams E, Becker L, Glass JT, Cotter RJ.

Anal Chem. 2011 Sep 1;83(17):6527-31. doi: 10.1021/ac200643m. Epub 2011 Aug 10.

PMID:
21718010
17.

A variety of novel lipid A structures obtained from Francisella tularensis live vaccine strain.

Beasley AS, Cotter RJ, Vogel SN, Inzana TJ, Qureshi AA, Qureshi N.

Innate Immun. 2012 Apr;18(2):268-78. doi: 10.1177/1753425911401054. Epub 2011 Jun 27.

18.

Enzymatically active prostate-specific antigen promotes growth of human prostate cancers.

Williams SA, Jelinek CA, Litvinov I, Cotter RJ, Isaacs JT, Denmeade SR.

Prostate. 2011 Nov;71(15):1595-607. doi: 10.1002/pros.21375. Epub 2011 Mar 10.

19.

Association between α4 integrin cytoplasmic tail and non-muscle myosin IIA regulates cell migration.

Rivera Rosado LA, Horn TA, McGrath SC, Cotter RJ, Yang JT.

J Cell Sci. 2011 Feb 1;124(Pt 3):483-92. doi: 10.1242/jcs.074211. Epub 2011 Jan 11.

20.

A reductionist cell-free major histocompatibility complex class II antigen processing system identifies immunodominant epitopes.

Hartman IZ, Kim A, Cotter RJ, Walter K, Dalai SK, Boronina T, Griffith W, Lanar DE, Schwenk R, Krzych U, Cole RN, Sadegh-Nasseri S.

Nat Med. 2010 Nov;16(11):1333-40. doi: 10.1038/nm.2248. Epub 2010 Oct 31.

21.

14-3-3 coordinates microtubules, Rac, and myosin II to control cell mechanics and cytokinesis.

Zhou Q, Kee YS, Poirier CC, Jelinek C, Osborne J, Divi S, Surcel A, Will ME, Eggert US, Müller-Taubenberger A, Iglesias PA, Cotter RJ, Robinson DN.

Curr Biol. 2010 Nov 9;20(21):1881-9. doi: 10.1016/j.cub.2010.09.048. Epub 2010 Oct 14.

22.

Time-of-flights and traps: from the Histone Code to Mars.

Cotter RJ, Swatkoski S, Becker L, Evans-Nguyen T.

Eur J Mass Spectrom (Chichester). 2010;16(3):331-40. doi: 10.1255/ejms.1082.

23.

Proinflammatory state, hepcidin, and anemia in older persons.

Ferrucci L, Semba RD, Guralnik JM, Ershler WB, Bandinelli S, Patel KV, Sun K, Woodman RC, Andrews NC, Cotter RJ, Ganz T, Nemeth E, Longo DL.

Blood. 2010 May 6;115(18):3810-6. doi: 10.1182/blood-2009-02-201087. Epub 2010 Jan 15.

24.

Side chain specificity of ADP-ribosylation by a sirtuin.

Fahie K, Hu P, Swatkoski S, Cotter RJ, Zhang Y, Wolberger C.

FEBS J. 2009 Dec;276(23):7159-76. doi: 10.1111/j.1742-4658.2009.07427.x. Epub 2009 Nov 6.

25.

Enhanced interaction between Hsp90 and raptor regulates mTOR signaling upon T cell activation.

Delgoffe GM, Kole TP, Cotter RJ, Powell JD.

Mol Immunol. 2009 Aug;46(13):2694-8. doi: 10.1016/j.molimm.2009.05.185. Epub 2009 Jul 7.

26.

Deciphering the unusual acylation pattern of Helicobacter pylori lipid A.

Stead CM, Beasley A, Cotter RJ, Trent MS.

J Bacteriol. 2008 Nov;190(21):7012-21. doi: 10.1128/JB.00667-08. Epub 2008 Aug 29.

27.

E-selectin receptors on human leukocytes.

Nimrichter L, Burdick MM, Aoki K, Laroy W, Fierro MA, Hudson SA, Von Seggern CE, Cotter RJ, Bochner BS, Tiemeyer M, Konstantopoulos K, Schnaar RL.

Blood. 2008 Nov 1;112(9):3744-52. doi: 10.1182/blood-2008-04-149641. Epub 2008 Jun 25.

28.

Structure of a novel lipid A obtained from the lipopolysaccharide of Caulobacter crescentus.

Smit J, Kaltashov IA, Cotter RJ, Vinogradov E, Perry MB, Haider H, Qureshi N.

Innate Immun. 2008 Feb;14(1):25-37. doi: 10.1177/1753425907087588. Erratum in: Innate Immun. 2008 Apr;14(2):107. Kaltoshov, Igor A [corrected to Kaltashov, Igor A].

PMID:
18387917
29.

Human Proteinpedia enables sharing of human protein data.

Mathivanan S, Ahmed M, Ahn NG, Alexandre H, Amanchy R, Andrews PC, Bader JS, Balgley BM, Bantscheff M, Bennett KL, Björling E, Blagoev B, Bose R, Brahmachari SK, Burlingame AS, Bustelo XR, Cagney G, Cantin GT, Cardasis HL, Celis JE, Chaerkady R, Chu F, Cole PA, Costello CE, Cotter RJ, Crockett D, DeLany JP, De Marzo AM, DeSouza LV, Deutsch EW, Dransfield E, Drewes G, Droit A, Dunn MJ, Elenitoba-Johnson K, Ewing RM, Van Eyk J, Faca V, Falkner J, Fang X, Fenselau C, Figeys D, Gagné P, Gelfi C, Gevaert K, Gimble JM, Gnad F, Goel R, Gromov P, Hanash SM, Hancock WS, Harsha HC, Hart G, Hays F, He F, Hebbar P, Helsens K, Hermeking H, Hide W, Hjernø K, Hochstrasser DF, Hofmann O, Horn DM, Hruban RH, Ibarrola N, James P, Jensen ON, Jensen PH, Jung P, Kandasamy K, Kheterpal I, Kikuno RF, Korf U, Körner R, Kuster B, Kwon MS, Lee HJ, Lee YJ, Lefevre M, Lehvaslaiho M, Lescuyer P, Levander F, Lim MS, Löbke C, Loo JA, Mann M, Martens L, Martinez-Heredia J, McComb M, McRedmond J, Mehrle A, Menon R, Miller CA, Mischak H, Mohan SS, Mohmood R, Molina H, Moran MF, Morgan JD, Moritz R, Morzel M, Muddiman DC, Nalli A, Navarro JD, Neubert TA, Ohara O, Oliva R, Omenn GS, Oyama M, Paik YK, Pennington K, Pepperkok R, Periaswamy B, Petricoin EF, Poirier GG, Prasad TS, Purvine SO, Rahiman BA, Ramachandran P, Ramachandra YL, Rice RH, Rick J, Ronnholm RH, Salonen J, Sanchez JC, Sayd T, Seshi B, Shankari K, Sheng SJ, Shetty V, Shivakumar K, Simpson RJ, Sirdeshmukh R, Siu KW, Smith JC, Smith RD, States DJ, Sugano S, Sullivan M, Superti-Furga G, Takatalo M, Thongboonkerd V, Trinidad JC, Uhlen M, Vandekerckhove J, Vasilescu J, Veenstra TD, Vidal-Taboada JM, Vihinen M, Wait R, Wang X, Wiemann S, Wu B, Xu T, Yates JR, Zhong J, Zhou M, Zhu Y, Zurbig P, Pandey A.

Nat Biotechnol. 2008 Feb;26(2):164-7. doi: 10.1038/nbt0208-164. No abstract available.

30.

Protein arrays on patterned porous gold substrates interrogated with mass spectrometry: detection of peptides in plasma.

Evans-Nguyen KM, Tao SC, Zhu H, Cotter RJ.

Anal Chem. 2008 Mar 1;80(5):1448-58. doi: 10.1021/ac701800h. Epub 2008 Feb 7.

PMID:
18254611
31.

Cardiovascular Initiative of the Human Proteome Organisation, 5th Workshop October 2007, Seoul, Korea.

Warburton S, White MY, Van Eyk JE, Cotter RJ, Ping P, Dunn MJ, Vondriska TM.

Proteomics. 2008 Mar;8(5):924-6. doi: 10.1002/pmic.200701083.

PMID:
18240139
32.

Fibroblast activation protein peptide substrates identified from human collagen I derived gelatin cleavage sites.

Aggarwal S, Brennen WN, Kole TP, Schneider E, Topaloglu O, Yates M, Cotter RJ, Denmeade SR.

Biochemistry. 2008 Jan 22;47(3):1076-86. Epub 2007 Dec 21.

33.

Nitrosative stress with HIV dementia causes decreased L-prostaglandin D synthase activity.

Li W, Malpica-Llanos TM, Gundry R, Cotter RJ, Sacktor N, McArthur J, Nath A.

Neurology. 2008 May 6;70(19 Pt 2):1753-62. Epub 2007 Dec 12.

PMID:
18077799
34.
35.

Further insights into the spectroscopic properties, electronic structure, and kinetics of formation of the heme-peroxo-copper complex [(F8TPP)FeIII-(O2(2-)-CuII(TMPA)]+.

Ghiladi RA, Chufan EE, del Río D, Solomon EI, Krebs C, Huynh BH, Huang HW, Moënne-Loccoz P, Kaderli S, Honecker M, Zuberbühler AD, Marzilli L, Cotter RJ, Karlin KD.

Inorg Chem. 2007 May 14;46(10):3889-902. Epub 2007 Apr 20.

PMID:
17444630
36.

Tandem time-of-flight (TOF/TOF) mass spectrometry and the curved-field reflectron.

Cotter RJ, Griffith W, Jelinek C.

J Chromatogr B Analyt Technol Biomed Life Sci. 2007 Aug;855(1):2-13. Epub 2007 Jan 13. Review.

PMID:
17258517
37.

An acetylation site in the middle domain of Hsp90 regulates chaperone function.

Scroggins BT, Robzyk K, Wang D, Marcu MG, Tsutsumi S, Beebe K, Cotter RJ, Felts S, Toft D, Karnitz L, Rosen N, Neckers L.

Mol Cell. 2007 Jan 12;25(1):151-9.

38.

Investigation of an albumin-enriched fraction of human serum and its albuminome.

Gundry RL, Fu Q, Jelinek CA, Van Eyk JE, Cotter RJ.

Proteomics Clin Appl. 2007 Jan 1;1(1):73-88.

39.

Structure and biosynthesis of free lipid A molecules that replace lipopolysaccharide in Francisella tularensis subsp. novicida.

Wang X, Ribeiro AA, Guan Z, McGrath SC, Cotter RJ, Raetz CR.

Biochemistry. 2006 Dec 5;45(48):14427-40.

40.

Virulence factors of Yersinia pestis are overcome by a strong lipopolysaccharide response.

Montminy SW, Khan N, McGrath S, Walkowicz MJ, Sharp F, Conlon JE, Fukase K, Kusumoto S, Sweet C, Miyake K, Akira S, Cotter RJ, Goguen JD, Lien E.

Nat Immunol. 2006 Oct;7(10):1066-73. Epub 2006 Sep 17.

PMID:
16980981
41.

The sirtuins hst3 and Hst4p preserve genome integrity by controlling histone h3 lysine 56 deacetylation.

Celic I, Masumoto H, Griffith WP, Meluh P, Cotter RJ, Boeke JD, Verreault A.

Curr Biol. 2006 Jul 11;16(13):1280-9.

42.

The lipid A 1-phosphatase of Helicobacter pylori is required for resistance to the antimicrobial peptide polymyxin.

Tran AX, Whittimore JD, Wyrick PB, McGrath SC, Cotter RJ, Trent MS.

J Bacteriol. 2006 Jun;188(12):4531-41.

43.

Identification of protein ubiquitylation by electrospray ionization tandem mass spectrometric analysis of sulfonated tryptic peptides.

Wang D, Kalume D, Pickart C, Pandey A, Cotter RJ.

Anal Chem. 2006 Jun 1;78(11):3681-7.

PMID:
16737224
44.

An outer membrane enzyme encoded by Salmonella typhimurium lpxR that removes the 3'-acyloxyacyl moiety of lipid A.

Reynolds CM, Ribeiro AA, McGrath SC, Cotter RJ, Raetz CR, Trent MS.

J Biol Chem. 2006 Aug 4;281(31):21974-87. Epub 2006 May 16.

45.

Expression cloning and periplasmic orientation of the Francisella novicida lipid A 4'-phosphatase LpxF.

Wang X, McGrath SC, Cotter RJ, Raetz CR.

J Biol Chem. 2006 Apr 7;281(14):9321-30. Epub 2006 Feb 8.

46.
47.

Disposable hydrophobic surface on MALDI targets for enhancing MS and MS/MS data of peptides.

Gundry RL, Edward R, Kole TP, Sutton C, Cotter RJ.

Anal Chem. 2005 Oct 15;77(20):6609-17.

PMID:
16223247
48.

Direct identification of ubiquitination sites on ubiquitin-conjugated CHIP using MALDI mass spectrometry.

Wang D, Xu W, McGrath SC, Patterson C, Neckers L, Cotter RJ.

J Proteome Res. 2005 Sep-Oct;4(5):1554-60.

PMID:
16212406
50.

A Leptospira interrogans enzyme with similarity to yeast Ste14p that methylates the 1-phosphate group of lipid A.

Boon Hinckley M, Reynolds CM, Ribeiro AA, McGrath SC, Cotter RJ, Lauw FN, Golenbock DT, Raetz CR.

J Biol Chem. 2005 Aug 26;280(34):30214-24. Epub 2005 Jun 30.

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