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Items: 9

1.

A framework for exhaustively mapping functional missense variants.

Weile J, Sun S, Cote AG, Knapp J, Verby M, Mellor JC, Wu Y, Pons C, Wong C, van Lieshout N, Yang F, Tasan M, Tan G, Yang S, Fowler DM, Nussbaum R, Bloom JD, Vidal M, Hill DE, Aloy P, Roth FP.

Mol Syst Biol. 2017 Dec 21;13(12):957. doi: 10.15252/msb.20177908.

2.

Assessing predictions of fitness effects of missense mutations in SUMO-conjugating enzyme UBE2I.

Zhang J, Kinch LN, Cong Q, Weile J, Sun S, Cote AG, Roth FP, Grishin NV.

Hum Mutat. 2017 Sep;38(9):1051-1063. doi: 10.1002/humu.23293.

PMID:
28817247
3.

Pooled-matrix protein interaction screens using Barcode Fusion Genetics.

Yachie N, Petsalaki E, Mellor JC, Weile J, Jacob Y, Verby M, Ozturk SB, Li S, Cote AG, Mosca R, Knapp JJ, Ko M, Yu A, Gebbia M, Sahni N, Yi S, Tyagi T, Sheykhkarimli D, Roth JF, Wong C, Musa L, Snider J, Liu YC, Yu H, Braun P, Stagljar I, Hao T, Calderwood MA, Pelletier L, Aloy P, Hill DE, Vidal M, Roth FP.

Mol Syst Biol. 2016 Apr 22;12(4):863. doi: 10.15252/msb.20156660.

4.

Determination and inference of eukaryotic transcription factor sequence specificity.

Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, Walhout AJM, Bouget FY, Ratsch G, Larrondo LF, Ecker JR, Hughes TR.

Cell. 2014 Sep 11;158(6):1431-1443. doi: 10.1016/j.cell.2014.08.009.

5.

The draft genome and transcriptome of Cannabis sativa.

van Bakel H, Stout JM, Cote AG, Tallon CM, Sharpe AG, Hughes TR, Page JE.

Genome Biol. 2011 Oct 20;12(10):R102. doi: 10.1186/gb-2011-12-10-r102.

6.

Sequence specificity is obtained from the majority of modular C2H2 zinc-finger arrays.

Lam KN, van Bakel H, Cote AG, van der Ven A, Hughes TR.

Nucleic Acids Res. 2011 Jun;39(11):4680-90. doi: 10.1093/nar/gkq1303. Epub 2011 Feb 14.

7.

Mus81-dependent double-strand DNA breaks at in vivo-generated cruciform structures in S. cerevisiae.

Coté AG, Lewis SM.

Mol Cell. 2008 Sep 26;31(6):800-12. doi: 10.1016/j.molcel.2008.08.025.

8.

Palindromes and genomic stress fractures: bracing and repairing the damage.

Lewis SM, Coté AG.

DNA Repair (Amst). 2006 Sep 8;5(9-10):1146-60. Epub 2006 Jun 30. Review. Erratum in: DNA Repair (Amst). 2007 Sep 1;6(9):1397.

PMID:
16807136
9.

Rapid, stabilizing palindrome rearrangements in somatic cells by the center-break mechanism.

Cunningham LA, Coté AG, Cam-Ozdemir C, Lewis SM.

Mol Cell Biol. 2003 Dec;23(23):8740-50.

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