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Items: 15

1.

Identifying loci with breeding potential across temperate and tropical adaptation via EigenGWAS and EnvGWAS.

Li J, Chen GB, Rasheed A, Li D, Sonder K, Zavala Espinosa C, Wang J, Costich DE, Schnable PS, Hearne SJ, Li H.

Mol Ecol. 2019 Aug;28(15):3544-3560. doi: 10.1111/mec.15169. Epub 2019 Aug 18.

2.

The Development of Quality Control Genotyping Approaches: A Case Study Using Elite Maize Lines.

Chen J, Zavala C, Ortega N, Petroli C, Franco J, BurgueƱo J, Costich DE, Hearne SJ.

PLoS One. 2016 Jun 9;11(6):e0157236. doi: 10.1371/journal.pone.0157236. eCollection 2016.

3.

Molecular characterization of CIMMYT maize inbred lines with genotyping-by-sequencing SNPs.

Wu Y, San Vicente F, Huang K, Dhliwayo T, Costich DE, Semagn K, Sudha N, Olsen M, Prasanna BM, Zhang X, Babu R.

Theor Appl Genet. 2016 Apr;129(4):753-765. doi: 10.1007/s00122-016-2664-8. Epub 2016 Feb 5.

4.

Genome-wide association study based on multiple imputation with low-depth sequencing data: application to biofuel traits in reed canarygrass.

Ramstein GP, Lipka AE, Lu F, Costich DE, Cherney JH, Buckler ES, Casler MD.

G3 (Bethesda). 2015 Mar 12;5(5):891-909. doi: 10.1534/g3.115.017533.

5.

Accelerating the switchgrass (Panicum virgatum L.) breeding cycle using genomic selection approaches.

Lipka AE, Lu F, Cherney JH, Buckler ES, Casler MD, Costich DE.

PLoS One. 2014 Nov 12;9(11):e112227. doi: 10.1371/journal.pone.0112227. eCollection 2014.

6.

Switchgrass genomic diversity, ploidy, and evolution: novel insights from a network-based SNP discovery protocol.

Lu F, Lipka AE, Glaubitz J, Elshire R, Cherney JH, Casler MD, Buckler ES, Costich DE.

PLoS Genet. 2013;9(1):e1003215. doi: 10.1371/journal.pgen.1003215. Epub 2013 Jan 17.

7.

SNP discovery with EST and NextGen sequencing in switchgrass (Panicum virgatum L.).

Ersoz ES, Wright MH, Pangilinan JL, Sheehan MJ, Tobias C, Casler MD, Buckler ES, Costich DE.

PLoS One. 2012;7(9):e44112. doi: 10.1371/journal.pone.0044112. Epub 2012 Sep 25.

8.

Association mapping: critical considerations shift from genotyping to experimental design.

Myles S, Peiffer J, Brown PJ, Ersoz ES, Zhang Z, Costich DE, Buckler ES.

Plant Cell. 2009 Aug;21(8):2194-202. doi: 10.1105/tpc.109.068437. Epub 2009 Aug 4. Review.

9.

'Junk' DNA and phenotypic evolution in Silene section Siphonomorpha.

Meagher TR, Costich DE.

Genet Res (Camb). 2008 Feb;90(1):111-8. doi: 10.1017/S001667230700897X.

PMID:
18289405
10.

Subfunctionalization of PhyB1 and PhyB2 in the control of seedling and mature plant traits in maize.

Sheehan MJ, Kennedy LM, Costich DE, Brutnell TP.

Plant J. 2007 Jan;49(2):338-53. Epub 2006 Dec 20.

11.

'Junk' DNA and long-term phenotypic evolution in Silene section Elisanthe (Caryophyllaceae).

Meagher TR, Costich DE.

Proc Biol Sci. 2004 Dec 7;271 Suppl 6:S493-7.

12.
13.

Photomorphogenic responses in maize seedling development.

Markelz NH, Costich DE, Brutnell TP.

Plant Physiol. 2003 Dec;133(4):1578-91. Epub 2003 Nov 26.

14.

Elongated mesocotyl1, a phytochrome-deficient mutant of maize.

Sawers RJ, Linley PJ, Farmer PR, Hanley NP, Costich DE, Terry MJ, Brutnell TP.

Plant Physiol. 2002 Sep;130(1):155-63.

15.

Determination of ploidy level and nuclear DNA content in blueberry by flow cytometry.

Costich DE, Ortiz R, Meagher TR, Bruederle LP, Vorsa N.

Theor Appl Genet. 1993 Sep;86(8):1001-6. doi: 10.1007/BF00211053.

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