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Items: 36

1.

Replication and refinement of a vaginal microbial signature of preterm birth in two racially distinct cohorts of US women.

Callahan BJ, DiGiulio DB, Goltsman DSA, Sun CL, Costello EK, Jeganathan P, Biggio JR, Wong RJ, Druzin ML, Shaw GM, Stevenson DK, Holmes SP, Relman DA.

Proc Natl Acad Sci U S A. 2017 Sep 12;114(37):9966-9971. doi: 10.1073/pnas.1705899114. Epub 2017 Aug 28.

2.

Candidatus Mycoplasma girerdii replicates, diversifies, and co-occurs with Trichomonas vaginalis in the oral cavity of a premature infant.

Costello EK, Sun CL, Carlisle EM, Morowitz MJ, Banfield JF, Relman DA.

Sci Rep. 2017 Jun 19;7(1):3764. doi: 10.1038/s41598-017-03821-7.

3.

Water-Soluble Osmium Complexes Suitable for use in Luminescence-Based, Hydrogel-Supported Sensors.

Wagner AM, Strohecker SA, Costello EK, Rood JA, Kneas KA.

J Fluoresc. 2016 Nov;26(6):2271-2280. Epub 2016 Sep 23.

PMID:
27664088
4.

Marine mammals harbor unique microbiotas shaped by and yet distinct from the sea.

Bik EM, Costello EK, Switzer AD, Callahan BJ, Holmes SP, Wells RS, Carlin KP, Jensen ED, Venn-Watson S, Relman DA.

Nat Commun. 2016 Feb 3;7:10516. doi: 10.1038/ncomms10516.

5.

Temporal and spatial variation of the human microbiota during pregnancy.

DiGiulio DB, Callahan BJ, McMurdie PJ, Costello EK, Lyell DJ, Robaczewska A, Sun CL, Goltsman DS, Wong RJ, Shaw G, Stevenson DK, Holmes SP, Relman DA.

Proc Natl Acad Sci U S A. 2015 Sep 1;112(35):11060-5. doi: 10.1073/pnas.1502875112. Epub 2015 Aug 17.

6.

Population health: immaturity in the gut microbial community.

Costello EK, Relman DA.

Nature. 2014 Jun 19;510(7505):344-5. doi: 10.1038/nature13347. Epub 2014 Jun 4. No abstract available.

PMID:
24896185
7.

Microbiome assembly across multiple body sites in low-birthweight infants.

Costello EK, Carlisle EM, Bik EM, Morowitz MJ, Relman DA.

MBio. 2013 Oct 29;4(6):e00782-13. doi: 10.1128/mBio.00782-13.

8.

Genetically dictated change in host mucus carbohydrate landscape exerts a diet-dependent effect on the gut microbiota.

Kashyap PC, Marcobal A, Ursell LK, Smits SA, Sonnenburg ED, Costello EK, Higginbottom SK, Domino SE, Holmes SP, Relman DA, Knight R, Gordon JI, Sonnenburg JL.

Proc Natl Acad Sci U S A. 2013 Oct 15;110(42):17059-64. doi: 10.1073/pnas.1306070110. Epub 2013 Sep 23.

9.

Cohabiting family members share microbiota with one another and with their dogs.

Song SJ, Lauber C, Costello EK, Lozupone CA, Humphrey G, Berg-Lyons D, Caporaso JG, Knights D, Clemente JC, Nakielny S, Gordon JI, Fierer N, Knight R.

Elife. 2013 Apr 16;2:e00458. doi: 10.7554/eLife.00458.

10.

Biphasic assembly of the murine intestinal microbiota during early development.

Pantoja-Feliciano IG, Clemente JC, Costello EK, Perez ME, Blaser MJ, Knight R, Dominguez-Bello MG.

ISME J. 2013 Jun;7(6):1112-5. doi: 10.1038/ismej.2013.15. Epub 2013 Mar 28.

11.

Distinct distal gut microbiome diversity and composition in healthy children from Bangladesh and the United States.

Lin A, Bik EM, Costello EK, Dethlefsen L, Haque R, Relman DA, Singh U.

PLoS One. 2013;8(1):e53838. doi: 10.1371/journal.pone.0053838. Epub 2013 Jan 22.

12.

Time series community genomics analysis reveals rapid shifts in bacterial species, strains, and phage during infant gut colonization.

Sharon I, Morowitz MJ, Thomas BC, Costello EK, Relman DA, Banfield JF.

Genome Res. 2013 Jan;23(1):111-20. doi: 10.1101/gr.142315.112. Epub 2012 Aug 30.

13.

Distinct cutaneous bacterial assemblages in a sampling of South American Amerindians and US residents.

Blaser MJ, Dominguez-Bello MG, Contreras M, Magris M, Hidalgo G, Estrada I, Gao Z, Clemente JC, Costello EK, Knight R.

ISME J. 2013 Jan;7(1):85-95. doi: 10.1038/ismej.2012.81. Epub 2012 Aug 16.

14.

The application of ecological theory toward an understanding of the human microbiome.

Costello EK, Stagaman K, Dethlefsen L, Bohannan BJ, Relman DA.

Science. 2012 Jun 8;336(6086):1255-62. doi: 10.1126/science.1224203. Epub 2012 Jun 6. Review.

15.

Sources of bacteria in outdoor air across cities in the midwestern United States.

Bowers RM, Sullivan AP, Costello EK, Collett JL Jr, Knight R, Fierer N.

Appl Environ Microbiol. 2011 Sep;77(18):6350-6. doi: 10.1128/AEM.05498-11. Epub 2011 Jul 29.

16.

Moving pictures of the human microbiome.

Caporaso JG, Lauber CL, Costello EK, Berg-Lyons D, Gonzalez A, Stombaugh J, Knights D, Gajer P, Ravel J, Fierer N, Gordon JI, Knight R.

Genome Biol. 2011;12(5):R50. doi: 10.1186/gb-2011-12-5-r50.

17.

Minimum information about a marker gene sequence (MIMARKS) and minimum information about any (x) sequence (MIxS) specifications.

Yilmaz P, Kottmann R, Field D, Knight R, Cole JR, Amaral-Zettler L, Gilbert JA, Karsch-Mizrachi I, Johnston A, Cochrane G, Vaughan R, Hunter C, Park J, Morrison N, Rocca-Serra P, Sterk P, Arumugam M, Bailey M, Baumgartner L, Birren BW, Blaser MJ, Bonazzi V, Booth T, Bork P, Bushman FD, Buttigieg PL, Chain PS, Charlson E, Costello EK, Huot-Creasy H, Dawyndt P, DeSantis T, Fierer N, Fuhrman JA, Gallery RE, Gevers D, Gibbs RA, San Gil I, Gonzalez A, Gordon JI, Guralnick R, Hankeln W, Highlander S, Hugenholtz P, Jansson J, Kau AL, Kelley ST, Kennedy J, Knights D, Koren O, Kuczynski J, Kyrpides N, Larsen R, Lauber CL, Legg T, Ley RE, Lozupone CA, Ludwig W, Lyons D, Maguire E, Methé BA, Meyer F, Muegge B, Nakielny S, Nelson KE, Nemergut D, Neufeld JD, Newbold LK, Oliver AE, Pace NR, Palanisamy G, Peplies J, Petrosino J, Proctor L, Pruesse E, Quast C, Raes J, Ratnasingham S, Ravel J, Relman DA, Assunta-Sansone S, Schloss PD, Schriml L, Sinha R, Smith MI, Sodergren E, Spo A, Stombaugh J, Tiedje JM, Ward DV, Weinstock GM, Wendel D, White O, Whiteley A, Wilke A, Wortman JR, Yatsunenko T, Glöckner FO.

Nat Biotechnol. 2011 May;29(5):415-20. doi: 10.1038/nbt.1823.

18.

Global patterns in the biogeography of bacterial taxa.

Nemergut DR, Costello EK, Hamady M, Lozupone C, Jiang L, Schmidt SK, Fierer N, Townsend AR, Cleveland CC, Stanish L, Knight R.

Environ Microbiol. 2011 Jan;13(1):135-144. doi: 10.1111/j.1462-2920.2010.02315.x.

19.

Strain-resolved community genomic analysis of gut microbial colonization in a premature infant.

Morowitz MJ, Denef VJ, Costello EK, Thomas BC, Poroyko V, Relman DA, Banfield JF.

Proc Natl Acad Sci U S A. 2011 Jan 18;108(3):1128-33. doi: 10.1073/pnas.1010992108. Epub 2010 Dec 29. Erratum in: Proc Natl Acad Sci U S A. 2011 Mar 15;108(11):4512.

20.

Supervised classification of human microbiota.

Knights D, Costello EK, Knight R.

FEMS Microbiol Rev. 2011 Mar;35(2):343-59. doi: 10.1111/j.1574-6976.2010.00251.x. Epub 2010 Oct 7. Review.

21.

The bacterial microbiota in the oral mucosa of rural Amerindians.

Contreras M, Costello EK, Hidalgo G, Magris M, Knight R, Dominguez-Bello MG.

Microbiology. 2010 Nov;156(Pt 11):3282-7. doi: 10.1099/mic.0.043174-0. Epub 2010 Sep 16.

PMID:
20847007
22.

Delivery mode shapes the acquisition and structure of the initial microbiota across multiple body habitats in newborns.

Dominguez-Bello MG, Costello EK, Contreras M, Magris M, Hidalgo G, Fierer N, Knight R.

Proc Natl Acad Sci U S A. 2010 Jun 29;107(26):11971-5. doi: 10.1073/pnas.1002601107. Epub 2010 Jun 21.

23.

Postprandial remodeling of the gut microbiota in Burmese pythons.

Costello EK, Gordon JI, Secor SM, Knight R.

ISME J. 2010 Nov;4(11):1375-85. doi: 10.1038/ismej.2010.71. Epub 2010 Jun 3.

24.

Direct sequencing of the human microbiome readily reveals community differences.

Kuczynski J, Costello EK, Nemergut DR, Zaneveld J, Lauber CL, Knights D, Koren O, Fierer N, Kelley ST, Ley RE, Gordon JI, Knight R.

Genome Biol. 2010;11(5):210. doi: 10.1186/gb-2010-11-5-210. Epub 2010 May 5. Review.

25.

QIIME allows analysis of high-throughput community sequencing data.

Caporaso JG, Kuczynski J, Stombaugh J, Bittinger K, Bushman FD, Costello EK, Fierer N, Peña AG, Goodrich JK, Gordon JI, Huttley GA, Kelley ST, Knights D, Koenig JE, Ley RE, Lozupone CA, McDonald D, Muegge BD, Pirrung M, Reeder J, Sevinsky JR, Turnbaugh PJ, Walters WA, Widmann J, Yatsunenko T, Zaneveld J, Knight R.

Nat Methods. 2010 May;7(5):335-6. doi: 10.1038/nmeth.f.303. Epub 2010 Apr 11. No abstract available.

26.

Forensic identification using skin bacterial communities.

Fierer N, Lauber CL, Zhou N, McDonald D, Costello EK, Knight R.

Proc Natl Acad Sci U S A. 2010 Apr 6;107(14):6477-81. doi: 10.1073/pnas.1000162107. Epub 2010 Mar 15.

27.

Environmental DNA sequencing primers for eutardigrades and bdelloid rotifers.

Robeson MS 2nd, Costello EK, Freeman KR, Whiting J, Adams B, Martin AP, Schmidt SK.

BMC Ecol. 2009 Dec 11;9:25. doi: 10.1186/1472-6785-9-25.

28.

Bacterial community variation in human body habitats across space and time.

Costello EK, Lauber CL, Hamady M, Fierer N, Gordon JI, Knight R.

Science. 2009 Dec 18;326(5960):1694-7. doi: 10.1126/science.1177486. Epub 2009 Nov 5.

29.

Regulation of myocardial ketone body metabolism by the gut microbiota during nutrient deprivation.

Crawford PA, Crowley JR, Sambandam N, Muegge BD, Costello EK, Hamady M, Knight R, Gordon JI.

Proc Natl Acad Sci U S A. 2009 Jul 7;106(27):11276-81. doi: 10.1073/pnas.0902366106. Epub 2009 Jun 22.

30.

Soil CO2 flux and photoautotrophic community composition in high-elevation, 'barren' soil.

Freeman KR, Pescador MY, Reed SC, Costello EK, Robeson MS, Schmidt SK.

Environ Microbiol. 2009 Mar;11(3):674-86. doi: 10.1111/j.1462-2920.2008.01844.x. Epub 2009 Jan 20.

PMID:
19187281
31.

Fumarole-supported islands of biodiversity within a hyperarid, high-elevation landscape on Socompa Volcano, Puna de Atacama, Andes.

Costello EK, Halloy SR, Reed SC, Sowell P, Schmidt SK.

Appl Environ Microbiol. 2009 Feb;75(3):735-47. doi: 10.1128/AEM.01469-08. Epub 2008 Dec 12.

32.

The earliest stages of ecosystem succession in high-elevation (5000 metres above sea level), recently deglaciated soils.

Schmidt SK, Reed SC, Nemergut DR, Grandy AS, Cleveland CC, Weintraub MN, Hill AW, Costello EK, Meyer AF, Neff JC, Martin AM.

Proc Biol Sci. 2008 Dec 22;275(1653):2793-802. doi: 10.1098/rspb.2008.0808.

33.

Biogeochemical consequences of rapid microbial turnover and seasonal succession in soil.

Schmidt SK, Costello EK, Nemergut DR, Cleveland CC, Reed SC, Weintraub MN, Meyer AF, Martin AM.

Ecology. 2007 Jun;88(6):1379-85.

PMID:
17601130
34.
35.

Structure and function of alpine and arctic soil microbial communities.

Nemergut DR, Costello EK, Meyer AF, Pescador MY, Weintraub MN, Schmidt SK.

Res Microbiol. 2005 Aug;156(7):775-84. Epub 2005 Apr 7. Review.

PMID:
15922566
36.

The rate and pattern of cladogenesis in microbes.

Martin AP, Costello EK, Meyer AF, Nemergut DR, Schmidt SK.

Evolution. 2004 May;58(5):946-55.

PMID:
15212376

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