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The Russian Mass Spectrometry Interest Group at ASMS: Over 20 Years of Science and Water Polo.

Tsybin YO, Bondarenko PV, Artaev VB, Zubarev RA, Costello CE.

J Am Soc Mass Spectrom. 2019 Oct 1;30(10):2178-2182.


Toward Automatic and Comprehensive Glycan Characterization by Online PGC-LC-EED MS/MS.

Wei J, Tang Y, Bai Y, Zaia J, Costello CE, Hong P, Lin C.

Anal Chem. 2020 Jan 7;92(1):782-791. doi: 10.1021/acs.analchem.9b03183. Epub 2019 Dec 24.


Endothelial cell-specific redox gene modulation inhibits angiogenesis but promotes B16F0 tumor growth in mice.

Yura Y, Chong BSH, Johnson RD, Watanabe Y, Tsukahara Y, Ferran B, Murdoch CE, Behring JB, McComb ME, Costello CE, Janssen-Heininger YMW, Cohen RA, Bachschmid MM, Matsui R.

FASEB J. 2019 Dec;33(12):14147-14158. doi: 10.1096/fj.201900786R. Epub 2019 Oct 26.


The Russian Mass Spectrometry Interest Group at ASMS: Over 20 Years of Science and Water Polo.

Tsybin YO, Bondarenko PV, Artaev VB, Zubarev RA, Costello CE.

J Am Soc Mass Spectrom. 2019 Oct;30(10):2178-2182. doi: 10.1007/s13361-019-02281-9. Epub 2019 Aug 7.


N-Glycosylation regulates ligand-dependent activation and signaling of vascular endothelial growth factor receptor 2 (VEGFR2).

Chandler KB, Leon DR, Kuang J, Meyer RD, Rahimi N, Costello CE.

J Biol Chem. 2019 Aug 30;294(35):13117-13130. doi: 10.1074/jbc.RA119.008643. Epub 2019 Jul 15.


Plasma Peptidylarginine Deiminase IV Promotes VWF-Platelet String Formation and Accelerates Thrombosis After Vessel Injury.

Sorvillo N, Mizurini DM, Coxon C, Martinod K, Tilvawala R, Cherpokova D, Salinger AJ, Seward RJ, Staudinger C, Weerapana E, Shapiro NI, Costello CE, Thompson PR, Wagner DD.

Circ Res. 2019 Aug 16;125(5):507-519. doi: 10.1161/CIRCRESAHA.118.314571. Epub 2019 Jun 28.


Glycosylation in the Tumor Microenvironment: Implications for Tumor Angiogenesis and Metastasis.

Chandler KB, Costello CE, Rahimi N.

Cells. 2019 Jun 5;8(6). pii: E544. doi: 10.3390/cells8060544. Review.


The most abundant cyst wall proteins of Acanthamoeba castellanii are lectins that bind cellulose and localize to distinct structures in developing and mature cyst walls.

Magistrado-Coxen P, Aqeel Y, Lopez A, Haserick JR, Urbanowicz BR, Costello CE, Samuelson J.

PLoS Negl Trop Dis. 2019 May 16;13(5):e0007352. doi: 10.1371/journal.pntd.0007352. eCollection 2019 May.


Altered Domain Structure of the Prion Protein Caused by Cu2+ Binding and Functionally Relevant Mutations: Analysis by Cross-Linking, MS/MS, and NMR.

McDonald AJ, Leon DR, Markham KA, Wu B, Heckendorf CF, Schilling K, Showalter HD, Andrews PC, McComb ME, Pushie MJ, Costello CE, Millhauser GL, Harris DA.

Structure. 2019 Jun 4;27(6):907-922.e5. doi: 10.1016/j.str.2019.03.008. Epub 2019 Apr 4.


Improved mass spectrometry-based activity assay reveals oxidative and metabolic stress as sirtuin-1 regulators.

Shao D, Yao C, Kim MH, Fry J, Cohen RA, Costello CE, Matsui R, Seta F, McComb ME, Bachschmid MM.

Redox Biol. 2019 Apr;22:101150. doi: 10.1016/j.redox.2019.101150. Epub 2019 Mar 5.


Oligomannose Glycopeptide Conjugates Elicit Antibodies Targeting the Glycan Core Rather than Its Extremities.

Nguyen DN, Xu B, Stanfield RL, Bailey JK, Horiya S, Temme JS, Leon DR, LaBranche CC, Montefiori DC, Costello CE, Wilson IA, Krauss IJ.

ACS Cent Sci. 2019 Feb 27;5(2):237-249. doi: 10.1021/acscentsci.8b00588. Epub 2019 Feb 6.


The minimum information required for a glycomics experiment (MIRAGE) project: LC guidelines.

Campbell MP, Abrahams JL, Rapp E, Struwe WB, Costello CE, Novotny M, Ranzinger R, York WS, Kolarich D, Rudd PM, Kettner C.

Glycobiology. 2019 May 1;29(5):349-354. doi: 10.1093/glycob/cwz009.


Multi-isotype Glycoproteomic Characterization of Serum Antibody Heavy Chains Reveals Isotype- and Subclass-Specific N-Glycosylation Profiles.

Chandler KB, Mehta N, Leon DR, Suscovich TJ, Alter G, Costello CE.

Mol Cell Proteomics. 2019 Apr;18(4):686-703. doi: 10.1074/mcp.RA118.001185. Epub 2019 Jan 18.


Characterization and Quantification of Highly Sulfated Glycosaminoglycan Isomers by Gated-Trapped Ion Mobility Spectrometry Negative Electron Transfer Dissociation MS/MS.

Wei J, Wu J, Tang Y, Ridgeway ME, Park MA, Costello CE, Zaia J, Lin C.

Anal Chem. 2019 Feb 19;91(4):2994-3001. doi: 10.1021/acs.analchem.8b05283. Epub 2019 Jan 31.


O-Fucosylation of thrombospondin-like repeats is required for processing of microneme protein 2 and for efficient host cell invasion by Toxoplasma gondii tachyzoites.

Bandini G, Leon DR, Hoppe CM, Zhang Y, Agop-Nersesian C, Shears MJ, Mahal LK, Routier FH, Costello CE, Samuelson J.

J Biol Chem. 2019 Feb 8;294(6):1967-1983. doi: 10.1074/jbc.RA118.005179. Epub 2018 Dec 11.


Comparison of Collisional and Electron-Based Dissociation Modes for Middle-Down Analysis of Multiply Glycosylated Peptides.

Khatri K, Pu Y, Klein JA, Wei J, Costello CE, Lin C, Zaia J.

J Am Soc Mass Spectrom. 2018 Jun;29(6):1075-1085. doi: 10.1007/s13361-018-1909-y. Epub 2018 Apr 16.


Characterization of Isomeric Glycans by Reversed Phase Liquid Chromatography-Electronic Excitation Dissociation Tandem Mass Spectrometry.

Tang Y, Wei J, Costello CE, Lin C.

J Am Soc Mass Spectrom. 2018 Jun;29(6):1295-1307. doi: 10.1007/s13361-018-1943-9. Epub 2018 Apr 13.


Snapshots of C-S Cleavage in Egt2 Reveals Substrate Specificity and Reaction Mechanism.

Irani S, Naowarojna N, Tang Y, Kathuria KR, Wang S, Dhembi A, Lee N, Yan W, Lyu H, Costello CE, Liu P, Zhang YJ.

Cell Chem Biol. 2018 May 17;25(5):519-529.e4. doi: 10.1016/j.chembiol.2018.02.002. Epub 2018 Mar 1.


How many human proteoforms are there?

Aebersold R, Agar JN, Amster IJ, Baker MS, Bertozzi CR, Boja ES, Costello CE, Cravatt BF, Fenselau C, Garcia BA, Ge Y, Gunawardena J, Hendrickson RC, Hergenrother PJ, Huber CG, Ivanov AR, Jensen ON, Jewett MC, Kelleher NL, Kiessling LL, Krogan NJ, Larsen MR, Loo JA, Ogorzalek Loo RR, Lundberg E, MacCoss MJ, Mallick P, Mootha VK, Mrksich M, Muir TW, Patrie SM, Pesavento JJ, Pitteri SJ, Rodriguez H, Saghatelian A, Sandoval W, Schlüter H, Sechi S, Slavoff SA, Smith LM, Snyder MP, Thomas PM, Uhlén M, Van Eyk JE, Vidal M, Walt DR, White FM, Williams ER, Wohlschlager T, Wysocki VH, Yates NA, Young NL, Zhang B.

Nat Chem Biol. 2018 Feb 14;14(3):206-214. doi: 10.1038/nchembio.2576.


De Novo Glycan Sequencing by Electronic Excitation Dissociation and Fixed-Charge Derivatization.

Tang Y, Pu Y, Gao J, Hong P, Costello CE, Lin C.

Anal Chem. 2018 Mar 20;90(6):3793-3801. doi: 10.1021/acs.analchem.7b04077. Epub 2018 Feb 27.


Apicomplexan C-Mannosyltransferases Modify Thrombospondin Type I-containing Adhesins of the TRAP Family.

Hoppe CM, Albuquerque-Wendt A, Bandini G, Leon DR, Shcherbakova A, Buettner FFR, Izquierdo L, Costello CE, Bakker H, Routier FH.

Glycobiology. 2018 May 1;28(5):333-343. doi: 10.1093/glycob/cwy013.


Oxidative Post-Translational Modifications of an Amyloidogenic Immunoglobulin Light Chain Protein.

Lu Y, Jiang Y, Prokaeva T, Connors LH, Costello CE.

Int J Mass Spectrom. 2017 May;416:71-79. doi: 10.1016/j.ijms.2016.11.006. Epub 2016 Nov 8.


MINAR1 is a Notch2-binding protein that inhibits angiogenesis and breast cancer growth.

Ho RX, Meyer RD, Chandler KB, Ersoy E, Park M, Bondzie PA, Rahimi N, Xu H, Costello CE, Rahimi N.

J Mol Cell Biol. 2018 Jun 1;10(3):195-204. doi: 10.1093/jmcb/mjy002.


The SysteMHC Atlas project.

Shao W, Pedrioli PGA, Wolski W, Scurtescu C, Schmid E, Vizcaíno JA, Courcelles M, Schuster H, Kowalewski D, Marino F, Arlehamn CSL, Vaughan K, Peters B, Sette A, Ottenhoff THM, Meijgaarden KE, Nieuwenhuizen N, Kaufmann SHE, Schlapbach R, Castle JC, Nesvizhskii AI, Nielsen M, Deutsch EW, Campbell DS, Moritz RL, Zubarev RA, Ytterberg AJ, Purcell AW, Marcilla M, Paradela A, Wang Q, Costello CE, Ternette N, van Veelen PA, van Els CACM, Heck AJR, de Souza GA, Sollid LM, Admon A, Stevanovic S, Rammensee HG, Thibault P, Perreault C, Bassani-Sternberg M, Aebersold R, Caron E.

Nucleic Acids Res. 2018 Jan 4;46(D1):D1237-D1247. doi: 10.1093/nar/gkx664.


Cryptosporidium parvum vaccine candidates are incompletely modified with O-linked-N-acetylgalactosamine or contain N-terminal N-myristate and S-palmitate.

Haserick JR, Klein JA, Costello CE, Samuelson J.

PLoS One. 2017 Aug 8;12(8):e0182395. doi: 10.1371/journal.pone.0182395. eCollection 2017.


Human Regulatory Protein Ki-1/57 Is a Target of SUMOylation and Affects PML Nuclear Body Formation.

Saito Â, Souza EE, Costa FC, Meirelles GV, Gonçalves KA, Santos MT, Bressan GC, McComb ME, Costello CE, Whelan SA, Kobarg J.

J Proteome Res. 2017 Sep 1;16(9):3147-3157. doi: 10.1021/acs.jproteome.7b00001. Epub 2017 Jul 31.


Two rheumatoid arthritis-specific autoantigens correlate microbial immunity with autoimmune responses in joints.

Pianta A, Arvikar SL, Strle K, Drouin EE, Wang Q, Costello CE, Steere AC.

J Clin Invest. 2017 Aug 1;127(8):2946-2956. doi: 10.1172/JCI93450. Epub 2017 Jun 26.


Microfluidic Capillary Electrophoresis-Mass Spectrometry for Analysis of Monosaccharides, Oligosaccharides, and Glycopeptides.

Khatri K, Klein JA, Haserick JR, Leon DR, Costello CE, McComb ME, Zaia J.

Anal Chem. 2017 Jun 20;89(12):6645-6655. doi: 10.1021/acs.analchem.7b00875. Epub 2017 Jun 6.


Construction of a Database of Collision Cross Section Values for Glycopeptides, Glycans, and Peptides Determined by IM-MS.

Glaskin RS, Khatri K, Wang Q, Zaia J, Costello CE.

Anal Chem. 2017 Apr 18;89(8):4452-4460. doi: 10.1021/acs.analchem.6b04146. Epub 2017 Mar 30.


Asparagine-Linked Glycans of Cryptosporidium parvum Contain a Single Long Arm, Are Barely Processed in the Endoplasmic Reticulum (ER) or Golgi, and Show a Strong Bias for Sites with Threonine.

Haserick JR, Leon DR, Samuelson J, Costello CE.

Mol Cell Proteomics. 2017 Apr;16(4 suppl 1):S42-S53. doi: 10.1074/mcp.M116.066035. Epub 2017 Feb 8.


The minimum information required for a glycomics experiment (MIRAGE) project: improving the standards for reporting glycan microarray-based data.

Liu Y, McBride R, Stoll M, Palma AS, Silva L, Agravat S, Aoki-Kinoshita KF, Campbell MP, Costello CE, Dell A, Haslam SM, Karlsson NG, Khoo KH, Kolarich D, Novotny MV, Packer NH, Ranzinger R, Rapp E, Rudd PM, Struwe WB, Tiemeyer M, Wells L, York WS, Zaia J, Kettner C, Paulson JC, Feizi T, Smith DF.

Glycobiology. 2017 Apr;27(4):280-284. Epub 2016 Nov 22.


Site-Specific N-Glycosylation of Endothelial Cell Receptor Tyrosine Kinase VEGFR-2.

Chandler KB, Leon DR, Meyer RD, Rahimi N, Costello CE.

J Proteome Res. 2017 Feb 3;16(2):677-688. doi: 10.1021/acs.jproteome.6b00738. Epub 2016 Dec 29.


Evidence of the Immune Relevance of Prevotella copri, a Gut Microbe, in Patients With Rheumatoid Arthritis.

Pianta A, Arvikar S, Strle K, Drouin EE, Wang Q, Costello CE, Steere AC.

Arthritis Rheumatol. 2017 May;69(5):964-975. doi: 10.1002/art.40003. Epub 2017 Apr 7.


IGPR-1 Is Required for Endothelial Cell-Cell Adhesion and Barrier Function.

Wang YHW, Meyer RD, Bondzie PA, Jiang Y, Rahimi I, Rezazadeh K, Mehta M, Laver NMV, Costello CE, Rahimi N.

J Mol Biol. 2016 Dec 4;428(24 Pt B):5019-5033. doi: 10.1016/j.jmb.2016.11.003. Epub 2016 Nov 9.


Reconstituted B cell receptor signaling reveals carbohydrate-dependent mode of activation.

Villar RF, Patel J, Weaver GC, Kanekiyo M, Wheatley AK, Yassine HM, Costello CE, Chandler KB, McTamney PM, Nabel GJ, McDermott AB, Mascola JR, Carr SA, Lingwood D.

Sci Rep. 2016 Oct 31;6:36298. doi: 10.1038/srep36298.


Immunogenic HLA-DR-Presented Self-Peptides Identified Directly from Clinical Samples of Synovial Tissue, Synovial Fluid, or Peripheral Blood in Patients with Rheumatoid Arthritis or Lyme Arthritis.

Wang Q, Drouin EE, Yao C, Zhang J, Huang Y, Leon DR, Steere AC, Costello CE.

J Proteome Res. 2017 Jan 6;16(1):122-136. doi: 10.1021/acs.jproteome.6b00386. Epub 2016 Nov 7.


Gated Trapped Ion Mobility Spectrometry Coupled to Fourier Transform Ion Cyclotron Resonance Mass Spectrometry.

Ridgeway ME, Wolff JJ, Silveira JA, Lin C, Costello CE, Park MA.

Int J Ion Mobil Spectrom. 2016 Sep;19(2):77-85. Epub 2016 Mar 29.


O-fucosylated glycoproteins form assemblies in close proximity to the nuclear pore complexes of Toxoplasma gondii.

Bandini G, Haserick JR, Motari E, Ouologuem DT, Lourido S, Roos DS, Costello CE, Robbins PW, Samuelson J.

Proc Natl Acad Sci U S A. 2016 Oct 11;113(41):11567-11572. Epub 2016 Sep 23.


The minimum information required for a glycomics experiment (MIRAGE) project: sample preparation guidelines for reliable reporting of glycomics datasets.

Struwe WB, Agravat S, Aoki-Kinoshita KF, Campbell MP, Costello CE, Dell A, Ten Feizi, Haslam SM, Karlsson NG, Khoo KH, Kolarich D, Liu Y, McBride R, Novotny MV, Packer NH, Paulson JC, Rapp E, Ranzinger R, Rudd PM, Smith DF, Tiemeyer M, Wells L, York WS, Zaia J, Kettner C.

Glycobiology. 2016 Sep;26(9):907-910. Epub 2016 Sep 21.


Enhancing glycan isomer separations with metal ions and positive and negative polarity ion mobility spectrometry-mass spectrometry analyses.

Zheng X, Zhang X, Schocker NS, Renslow RS, Orton DJ, Khamsi J, Ashmus RA, Almeida IC, Tang K, Costello CE, Smith RD, Michael K, Baker ES.

Anal Bioanal Chem. 2017 Jan;409(2):467-476. doi: 10.1007/s00216-016-9866-4. Epub 2016 Sep 7.


O-Linked N-Acetylglucosamine (O-GlcNAc) Transferase and O-GlcNAcase Interact with Mi2β Protein at the Aγ-Globin Promoter.

Zhang Z, Costa FC, Tan EP, Bushue N, DiTacchio L, Costello CE, McComb ME, Whelan SA, Peterson KR, Slawson C.

J Biol Chem. 2016 Jul 22;291(30):15628-40. doi: 10.1074/jbc.M116.721928. Epub 2016 May 26.


Comparative Proteomics Reveals Dysregulated Mitochondrial O-GlcNAcylation in Diabetic Hearts.

Ma J, Banerjee P, Whelan SA, Liu T, Wei AC, Ramirez-Correa G, McComb ME, Costello CE, O'Rourke B, Murphy A, Hart GW.

J Proteome Res. 2016 Jul 1;15(7):2254-64. doi: 10.1021/acs.jproteome.6b00250. Epub 2016 Jun 2.


Epithelial Mesenchymal Transition Induces Aberrant Glycosylation through Hexosamine Biosynthetic Pathway Activation.

Lucena MC, Carvalho-Cruz P, Donadio JL, Oliveira IA, de Queiroz RM, Marinho-Carvalho MM, Sola-Penna M, de Paula IF, Gondim KC, McComb ME, Costello CE, Whelan SA, Todeschini AR, Dias WB.

J Biol Chem. 2016 Jun 17;291(25):12917-29. doi: 10.1074/jbc.M116.729236. Epub 2016 Apr 18.


The biochemical origins of the surface-enhanced Raman spectra of bacteria: a metabolomics profiling by SERS.

Premasiri WR, Lee JC, Sauer-Budge A, Théberge R, Costello CE, Ziegler LD.

Anal Bioanal Chem. 2016 Jul;408(17):4631-47. doi: 10.1007/s00216-016-9540-x. Epub 2016 Apr 21.


Separation and Identification of Isomeric Glycans by Selected Accumulation-Trapped Ion Mobility Spectrometry-Electron Activated Dissociation Tandem Mass Spectrometry.

Pu Y, Ridgeway ME, Glaskin RS, Park MA, Costello CE, Lin C.

Anal Chem. 2016 Apr 5;88(7):3440-3. doi: 10.1021/acs.analchem.6b00041. Epub 2016 Mar 14.


Matrix metalloproteinase-10 is a target of T and B cell responses that correlate with synovial pathology in patients with antibiotic-refractory Lyme arthritis.

Crowley JT, Strle K, Drouin EE, Pianta A, Arvikar SL, Wang Q, Costello CE, Steere AC.

J Autoimmun. 2016 May;69:24-37. doi: 10.1016/j.jaut.2016.02.005. Epub 2016 Feb 26.


Glycomics and glycoproteomics of membrane proteins and cell-surface receptors: Present trends and future opportunities.

Chandler KB, Costello CE.

Electrophoresis. 2016 Jun;37(11):1407-19. doi: 10.1002/elps.201500552. Epub 2016 Mar 29. Review.


Antisense Transcripts Delimit Exonucleolytic Activity of the Mitochondrial 3' Processome to Generate Guide RNAs.

Suematsu T, Zhang L, Aphasizheva I, Monti S, Huang L, Wang Q, Costello CE, Aphasizhev R.

Mol Cell. 2016 Feb 4;61(3):364-378. doi: 10.1016/j.molcel.2016.01.004. Epub 2016 Jan 28.


S- to N-Palmitoyl Transfer During Proteomic Sample Preparation.

Ji Y, Bachschmid MM, Costello CE, Lin C.

J Am Soc Mass Spectrom. 2016 Apr;27(4):677-85. doi: 10.1007/s13361-015-1319-3. Epub 2016 Jan 4.


Ribosome-associated pentatricopeptide repeat proteins function as translational activators in mitochondria of trypanosomes.

Aphasizheva I, Maslov DA, Qian Y, Huang L, Wang Q, Costello CE, Aphasizhev R.

Mol Microbiol. 2016 Mar;99(6):1043-58. doi: 10.1111/mmi.13287. Epub 2016 Jan 20.

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