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Items: 8

1.

Comparing Ease of Programming in C++, Go, and Java for Implementing a Next-Generation Sequencing Tool.

Costanza P, Herzeel C, Verachtert W.

Evol Bioinform Online. 2019 Aug 15;15:1176934319869015. doi: 10.1177/1176934319869015. eCollection 2019.

2.

A comparison of three programming languages for a full-fledged next-generation sequencing tool.

Costanza P, Herzeel C, Verachtert W.

BMC Bioinformatics. 2019 Jun 3;20(1):301. doi: 10.1186/s12859-019-2903-5.

3.

elPrep 4: A multithreaded framework for sequence analysis.

Herzeel C, Costanza P, Decap D, Fostier J, Verachtert W.

PLoS One. 2019 Feb 13;14(2):e0209523. doi: 10.1371/journal.pone.0209523. eCollection 2019.

4.

Generic accelerated sequence alignment in SeqAn using vectorization and multi-threading.

Rahn R, Budach S, Costanza P, Ehrhardt M, Hancox J, Reinert K.

Bioinformatics. 2018 Oct 15;34(20):3437-3445. doi: 10.1093/bioinformatics/bty380.

PMID:
29726911
5.

Halvade-RNA: Parallel variant calling from transcriptomic data using MapReduce.

Decap D, Reumers J, Herzeel C, Costanza P, Fostier J.

PLoS One. 2017 Mar 30;12(3):e0174575. doi: 10.1371/journal.pone.0174575. eCollection 2017.

6.

elPrep: High-Performance Preparation of Sequence Alignment/Map Files for Variant Calling.

Herzeel C, Costanza P, Decap D, Fostier J, Reumers J.

PLoS One. 2015 Jul 16;10(7):e0132868. doi: 10.1371/journal.pone.0132868. eCollection 2015.

7.

Halvade: scalable sequence analysis with MapReduce.

Decap D, Reumers J, Herzeel C, Costanza P, Fostier J.

Bioinformatics. 2015 Aug 1;31(15):2482-8. doi: 10.1093/bioinformatics/btv179. Epub 2015 Mar 26.

8.

What's different about a PSO?

Atlas RF, Costanza PK.

Bus Health. 1998 Jun;16(6):27-8, 33-5. No abstract available.

PMID:
10180108

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