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A three-years assessment of Ixodes ricinus-borne pathogens in a French peri-urban forest.

Lejal E, Marsot M, Chalvet-Monfray K, Cosson JF, Moutailler S, Vayssier-Taussat M, Pollet T.

Parasit Vectors. 2019 Nov 21;12(1):551. doi: 10.1186/s13071-019-3799-7.


Monitoring Silent Spillovers Before Emergence: A Pilot Study at the Tick/Human Interface in Thailand.

Temmam S, Chrétien D, Bigot T, Dufour E, Petres S, Desquesnes M, Devillers E, Dumarest M, Yousfi L, Jittapalapong S, Karnchanabanthoeng A, Chaisiri K, Gagnieur L, Cosson JF, Vayssier-Taussat M, Morand S, Moutailler S, Eloit M.

Front Microbiol. 2019 Oct 17;10:2315. doi: 10.3389/fmicb.2019.02315. eCollection 2019.


FragSAD: A database of diversity and species abundance distributions from habitat fragments.

Chase JM, Liebergesell M, Sagouis A, May F, Blowes SA, Berg Å, Bernard E, Brosi BJ, Cadotte MW, Cayuela L, Chiarello AG, Cosson JF, Cresswell W, Dami FD, Dauber J, Dickman CR, Didham RK, Edwards DP, Farneda FZ, Gavish Y, Gonçalves-Souza T, Guadagnin DL, Henry M, López-Baucells A, Kappes H, Mac Nally R, Manu S, Martensen AC, McCollin D, Meyer CFJ, Neckel-Oliveira S, Nogueira A, Pons JM, Raheem DC, Ramos FN, Rocha R, Sam K, Slade E, Stireman JO 3rd, Struebig MJ, Vasconcelos H, Ziv Y.

Ecology. 2019 Dec;100(12):e02861. doi: 10.1002/ecy.2861. Epub 2019 Oct 1.


Phylogeography of Puumala orthohantavirus in Europe.

Castel G, Chevenet F, Razzauti M, Murri S, Marianneau P, Cosson JF, Tordo N, Plyusnin A.

Viruses. 2019 Jul 24;11(8). pii: E679. doi: 10.3390/v11080679.


[CiTIQUE's participative research].

Cosson JF, Brun-Jacob A, Marchand J, Boniface P, Ortmans C, Salvat G, Armand JM.

Sante Publique. 2019 May 13;S1(HS):89-90. doi: 10.3917/spub.190.0089. French. No abstract available.


[Ecology of Lyme disease].

Cosson JF.

Sante Publique. 2019 May 13;S1(HS):73-87. doi: 10.3917/spub.190.0073. French.


Changing landscapes of Southeast Asia and rodent-borne diseases: decreased diversity but increased transmission risks.

Morand S, Blasdell K, Bordes F, Buchy P, Carcy B, Chaisiri K, Chaval Y, Claude J, Cosson JF, Desquesnes M, Jittapalapong S, Jiyipong T, Karnchanabanthoen A, Pornpan P, Rolain JM, Tran A.

Ecol Appl. 2019 Jun;29(4):e01886. doi: 10.1002/eap.1886. Epub 2019 Apr 15.


Evaluating metabarcoding to analyse diet composition of species foraging in anthropogenic landscapes using Ion Torrent and Illumina sequencing.

Forin-Wiart MA, Poulle ML, Piry S, Cosson JF, Larose C, Galan M.

Sci Rep. 2018 Nov 20;8(1):17091. doi: 10.1038/s41598-018-34430-7.


Infection of Rodents by Orientia tsutsugamushi, the Agent of Scrub Typhus in Relation to Land Use in Thailand.

Chaisiri K, Cosson JF, Morand S.

Trop Med Infect Dis. 2017 Oct 6;2(4). pii: E53. doi: 10.3390/tropicalmed2040053.


High Throughput Sequencing and Network Analysis Disentangle the Microbial Communities of Ticks and Hosts Within and Between Ecosystems.

Estrada-Peña A, Cabezas-Cruz A, Pollet T, Vayssier-Taussat M, Cosson JF.

Front Cell Infect Microbiol. 2018 Jul 9;8:236. doi: 10.3389/fcimb.2018.00236. eCollection 2018.


Ecological and sanitary impacts of bacterial communities associated to biological invasions in African commensal rodent communities.

Diagne C, Galan M, Tamisier L, d'Ambrosio J, Dalecky A, Bâ K, Kane M, Niang Y, Diallo M, Sow A, Gauthier P, Tatard C, Loiseau A, Piry S, Sembène M, Cosson JF, Charbonnel N, Brouat C.

Sci Rep. 2017 Nov 3;7(1):14995. doi: 10.1038/s41598-017-14880-1.


Population genetics, community of parasites, and resistance to rodenticides in an urban brown rat (Rattus norvegicus) population.

Desvars-Larrive A, Pascal M, Gasqui P, Cosson JF, Benoît E, Lattard V, Crespin L, Lorvelec O, Pisanu B, Teynié A, Vayssier-Taussat M, Bonnet S, Marianneau P, Lacôte S, Bourhy P, Berny P, Pavio N, Le Poder S, Gilot-Fromont E, Jourdain E, Hammed A, Fourel I, Chikh F, Vourc'h G.

PLoS One. 2017 Sep 8;12(9):e0184015. doi: 10.1371/journal.pone.0184015. eCollection 2017.


Consequences of organ choice in describing bacterial pathogen assemblages in a rodent population.

Villette P, Afonso E, Couval G, Levret A, Galan M, Tatard C, Cosson JF, Giraudoux P.

Epidemiol Infect. 2017 Oct;145(14):3070-3075. doi: 10.1017/S0950268817001893. Epub 2017 Aug 29.


Microevolution of bank voles (Myodes glareolus) at neutral and immune-related genes during multiannual dynamic cycles: Consequences for Puumala hantavirus epidemiology.

Dubois A, Galan M, Cosson JF, Gauffre B, Henttonen H, Niemimaa J, Razzauti M, Voutilainen L, Vitalis R, Guivier E, Charbonnel N.

Infect Genet Evol. 2017 Apr;49:318-329. doi: 10.1016/j.meegid.2016.12.007. Epub 2016 Dec 9.


16S rRNA Amplicon Sequencing for Epidemiological Surveys of Bacteria in Wildlife.

Galan M, Razzauti M, Bard E, Bernard M, Brouat C, Charbonnel N, Dehne-Garcia A, Loiseau A, Tatard C, Tamisier L, Vayssier-Taussat M, Vignes H, Cosson JF.

mSystems. 2016 Jul 19;1(4). pii: e00032-16. eCollection 2016 Jul-Aug.



Khlyap LA, Kosoy M, Popov VP, Cosson JF, Morand S.

Med Parazitol (Mosk). 2016 Jan-Mar;(1):47-52. Review. Russian.


Co-infection of Ticks: The Rule Rather Than the Exception.

Moutailler S, Valiente Moro C, Vaumourin E, Michelet L, Tran FH, Devillers E, Cosson JF, Gasqui P, Van VT, Mavingui P, Vourc'h G, Vayssier-Taussat M.

PLoS Negl Trop Dis. 2016 Mar 17;10(3):e0004539. doi: 10.1371/journal.pntd.0004539. eCollection 2016 Mar.


Emerging horizons for tick-borne pathogens: from the 'one pathogen-one disease' vision to the pathobiome paradigm.

Vayssier-Taussat M, Kazimirova M, Hubalek Z, Hornok S, Farkas R, Cosson JF, Bonnet S, Vourch G, Gasqui P, Mihalca AD, Plantard O, Silaghi C, Cutler S, Rizzoli A.

Future Microbiol. 2015;10(12):2033-43. doi: 10.2217/fmb.15.114. Epub 2015 Nov 19. Review.


Environmental factors and public health policy associated with human and rodent infection by leptospirosis: a land cover-based study in Nan province, Thailand.

Della Rossa P, Tantrakarnapa K, Sutdan D, Kasetsinsombat K, Cosson JF, Supputamongkol Y, Chaisiri K, Tran A, Supputamongkol S, Binot A, Lajaunie C, Morand S.

Epidemiol Infect. 2016 May;144(7):1550-62. doi: 10.1017/S0950268815002903. Epub 2015 Nov 26.


Complete Genome and Phylogeny of Puumala Hantavirus Isolates Circulating in France.

Castel G, Couteaudier M, Sauvage F, Pons JB, Murri S, Plyusnina A, Pontier D, Cosson JF, Plyusnin A, Marianneau P, Tordo N.

Viruses. 2015 Oct 22;7(10):5476-88. doi: 10.3390/v7102884.


A Comparison between Transcriptome Sequencing and 16S Metagenomics for Detection of Bacterial Pathogens in Wildlife.

Razzauti M, Galan M, Bernard M, Maman S, Klopp C, Charbonnel N, Vayssier-Taussat M, Eloit M, Cosson JF.

PLoS Negl Trop Dis. 2015 Aug 18;9(8):e0003929. doi: 10.1371/journal.pntd.0003929. eCollection 2015.


Immunogenetic heterogeneity in a widespread ungulate: the European roe deer (Capreolus capreolus).

Quéméré E, Galan M, Cosson JF, Klein F, Aulagnier S, Gilot-Fromont E, Merlet J, Bonhomme M, Hewison AJ, Charbonnel N.

Mol Ecol. 2015 Aug;24(15):3873-87. doi: 10.1111/mec.13292. Epub 2015 Jul 17.


Global parasite and Rattus rodent invasions: The consequences for rodent-borne diseases.

Morand S, Bordes F, Chen HW, Claude J, Cosson JF, Galan M, Czirják GÁ, Greenwood AD, Latinne A, Michaux J, Ribas A.

Integr Zool. 2015 Sep;10(5):409-23. doi: 10.1111/1749-4877.12143. Review.


How a multidisciplinary 'One Health' approach can combat the tick-borne pathogen threat in Europe.

Vayssier-Taussat M, Cosson JF, Degeilh B, Eloit M, Fontanet A, Moutailler S, Raoult D, Sellal E, Ungeheuer MN, Zylbermann P.

Future Microbiol. 2015;10(5):809-18. doi: 10.2217/fmb.15.15. Review.


Detection of Orientia sp. DNA in rodents from Asia, West Africa and Europe.

Cosson JF, Galan M, Bard E, Razzauti M, Bernard M, Morand S, Brouat C, Dalecky A, Bâ K, Charbonnel N, Vayssier-Taussat M.

Parasit Vectors. 2015 Mar 21;8:172. doi: 10.1186/s13071-015-0784-7.


Habitat fragmentation alters the properties of a host-parasite network: rodents and their helminths in South-East Asia.

Bordes F, Morand S, Pilosof S, Claude J, Krasnov BR, Cosson JF, Chaval Y, Ribas A, Chaisiri K, Blasdell K, Herbreteau V, Dupuy S, Tran A.

J Anim Ecol. 2015 Sep;84(5):1253-63. doi: 10.1111/1365-2656.12368. Epub 2015 Apr 23.


Aboriginal and invasive rats of genus Rattus as hosts of infectious agents.

Kosoy M, Khlyap L, Cosson JF, Morand S.

Vector Borne Zoonotic Dis. 2015 Jan;15(1):3-12. doi: 10.1089/vbz.2014.1629. Review.


Host-parasite network structure is associated with community-level immunogenetic diversity.

Pilosof S, Fortuna MA, Cosson JF, Galan M, Kittipong C, Ribas A, Segal E, Krasnov BR, Morand S, Bascompte J.

Nat Commun. 2014 Oct 14;5:5172. doi: 10.1038/ncomms6172.


Species undersampling in tropical bat surveys: effects on emerging biodiversity patterns.

Meyer CF, Aguiar LM, Aguirre LF, Baumgarten J, Clarke FM, Cosson JF, Estrada Villegas S, Fahr J, Faria D, Furey N, Henry M, Jenkins RK, Kunz TH, Cristina MacSwiney González M, Moya I, Pons JM, Racey PA, Rex K, Sampaio EM, Stoner KE, Voigt CC, von Staden D, Weise CD, Kalko EK.

J Anim Ecol. 2015 Jan;84(1):113-23. doi: 10.1111/1365-2656.12261. Epub 2014 Jul 22.


Epidemiology of leptospira transmitted by rodents in southeast Asia.

Cosson JF, Picardeau M, Mielcarek M, Tatard C, Chaval Y, Suputtamongkol Y, Buchy P, Jittapalapong S, Herbreteau V, Morand S.

PLoS Negl Trop Dis. 2014 Jun 5;8(6):e2902. doi: 10.1371/journal.pntd.0002902. eCollection 2014 Jun.


Short-term variations in gene flow related to cyclic density fluctuations in the common vole.

Gauffre B, Berthier K, Inchausti P, Chaval Y, Bretagnolle V, Cosson JF.

Mol Ecol. 2014 Jul;23(13):3214-25. doi: 10.1111/mec.12818.


Genetic characterization of the human relapsing fever spirochete Borrelia miyamotoi in vectors and animal reservoirs of Lyme disease spirochetes in France.

Cosson JF, Michelet L, Chotte J, Le Naour E, Cote M, Devillers E, Poulle ML, Huet D, Galan M, Geller J, Moutailler S, Vayssier-Taussat M.

Parasit Vectors. 2014 May 20;7:233. doi: 10.1186/1756-3305-7-233.


Shifting the paradigm from pathogens to pathobiome: new concepts in the light of meta-omics.

Vayssier-Taussat M, Albina E, Citti C, Cosson JF, Jacques MA, Lebrun MH, Le Loir Y, Ogliastro M, Petit MA, Roumagnac P, Candresse T.

Front Cell Infect Microbiol. 2014 Mar 5;4:29. doi: 10.3389/fcimb.2014.00029. eCollection 2014. Review.


Changes in diversification patterns and signatures of selection during the evolution of murinae-associated hantaviruses.

Castel G, Razzauti M, Jousselin E, Kergoat GJ, Cosson JF.

Viruses. 2014 Mar 10;6(3):1112-34. doi: 10.3390/v6031112.


Dispersal, landscape and travelling waves in cyclic vole populations.

Berthier K, Piry S, Cosson JF, Giraudoux P, Foltête JC, Defaut R, Truchetet D, Lambin X.

Ecol Lett. 2014 Jan;17(1):53-64. doi: 10.1111/ele.12207. Epub 2013 Nov 17.


Landscape features and helminth co-infection shape bank vole immunoheterogeneity, with consequences for Puumala virus epidemiology.

Guivier E, Galan M, Henttonen H, Cosson JF, Charbonnel N.

Heredity (Edinb). 2014 Mar;112(3):274-81. doi: 10.1038/hdy.2013.103. Epub 2013 Oct 23.


Contrasted evolutionary histories of two Toll-like receptors (Tlr4 and Tlr7) in wild rodents (MURINAE).

Fornůsková A, Vinkler M, Pagès M, Galan M, Jousselin E, Cerqueira F, Morand S, Charbonnel N, Bryja J, Cosson JF.

BMC Evol Biol. 2013 Sep 12;13:194. doi: 10.1186/1471-2148-13-194.


Cytonuclear discordance among Southeast Asian black rats (Rattus rattus complex).

Pagès M, Bazin E, Galan M, Chaval Y, Claude J, Herbreteau V, Michaux J, Piry S, Morand S, Cosson JF.

Mol Ecol. 2013 Feb;22(4):1019-34. doi: 10.1111/mec.12149. Epub 2012 Dec 24.


Coumatetralyl resistance of Rattus tanezumi infesting oil palm plantations in Indonesia.

Andru J, Cosson JF, Caliman JP, Benoit E.

Ecotoxicology. 2013 Mar;22(2):377-86. doi: 10.1007/s10646-012-1032-y. Epub 2012 Dec 21.


Invasion genetics of the introduced black rat (Rattus rattus) in Senegal, West Africa.

Konečný A, Estoup A, Duplantier JM, Bryja J, Bâ K, Galan M, Tatard C, Cosson JF.

Mol Ecol. 2013 Jan;22(2):286-300. doi: 10.1111/mec.12112. Epub 2012 Dec 3.


Candidatus Neoehrlichia mikurensis in bank voles, France.

Vayssier-Taussat M, Le Rhun D, Buffet JP, Maaoui N, Galan M, Guivier E, Charbonnel N, Cosson JF.

Emerg Infect Dis. 2012 Dec;18(12):2063-5. doi: 10.3201/eid1812.120846.


Next-generation sequencing for rodent barcoding: species identification from fresh, degraded and environmental samples.

Galan M, Pagès M, Cosson JF.

PLoS One. 2012;7(11):e48374. doi: 10.1371/journal.pone.0048374. Epub 2012 Nov 7.


Rodent-borne hantaviruses in Cambodia, Lao PDR, and Thailand.

Blasdell K, Cosson JF, Chaval Y, Herbreteau V, Douangboupha B, Jittapalapong S, Lundqvist A, Hugot JP, Morand S, Buchy P.

Ecohealth. 2011 Dec;8(4):432-43. doi: 10.1007/s10393-011-0725-7. Epub 2011 Nov 29.


Landscape genetics highlights the role of bank vole metapopulation dynamics in the epidemiology of Puumala hantavirus.

Guivier E, Galan M, Chaval Y, Xuéreb A, Ribas Salvador A, Poulle ML, Voutilainen L, Henttonen H, Charbonnel N, Cosson JF.

Mol Ecol. 2011 Sep;20(17):3569-83. doi: 10.1111/j.1365-294X.2011.05199.x. Epub 2011 Aug 8.


Are water vole resistant to anticoagulant rodenticides following field treatments?

Vein J, Grandemange A, Cosson JF, Benoit E, Berny PJ.

Ecotoxicology. 2011 Aug;20(6):1432-41. doi: 10.1007/s10646-011-0700-7. Epub 2011 Jun 1.


Concomitant influence of helminth infection and landscape on the distribution of Puumala hantavirus in its reservoir, Myodes glareolus.

Salvador AR, Guivier E, Xuéreb A, Chaval Y, Cadet P, Poulle ML, Sironen T, Voutilainen L, Henttonen H, Cosson JF, Charbonnel N.

BMC Microbiol. 2011 Feb 8;11(1):30. doi: 10.1186/1471-2180-11-30.


No difference between the sexes in fine-scale spatial genetic structure of roe deer.

Bonnot N, Gaillard JM, Coulon A, Galan M, Cosson JF, Delorme D, Klein F, Hewison AJ.

PLoS One. 2010 Dec 28;5(12):e14436. doi: 10.1371/journal.pone.0014436.


Tnf-α expression and promoter sequences reflect the balance of tolerance/resistance to Puumala hantavirus infection in European bank vole populations.

Guivier E, Galan M, Salvador AR, Xuéreb A, Chaval Y, Olsson GE, Essbauer S, Henttonen H, Voutilainen L, Cosson JF, Charbonnel N.

Infect Genet Evol. 2010 Dec;10(8):1208-17. doi: 10.1016/j.meegid.2010.07.022. Epub 2010 Aug 5.


Associations between MHC genes and Puumala virus infection in Myodes glareolus are detected in wild populations, but not from experimental infection data.

Guivier E, Galan M, Malé PJ, Kallio ER, Voutilainen L, Henttonen H, Olsson GE, Lundkvist A, Tersago K, Augot D, Cosson JF, Charbonnel N.

J Gen Virol. 2010 Oct;91(Pt 10):2507-12. doi: 10.1099/vir.0.021600-0. Epub 2010 Jun 23.


Revisiting the taxonomy of the Rattini tribe: a phylogeny-based delimitation of species boundaries.

Pagès M, Chaval Y, Herbreteau V, Waengsothorn S, Cosson JF, Hugot JP, Morand S, Michaux J.

BMC Evol Biol. 2010 Jun 18;10:184. doi: 10.1186/1471-2148-10-184.

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