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Items: 1 to 50 of 53

1.

bHLH-PAS protein RITMO1 regulates diel biological rhythms in the marine diatom Phaeodactylum tricornutum.

Annunziata R, Ritter A, Fortunato AE, Manzotti A, Cheminant-Navarro S, Agier N, Huysman MJJ, Winge P, Bones AM, Bouget FY, Cosentino Lagomarsino M, Bouly JP, Falciatore A.

Proc Natl Acad Sci U S A. 2019 Jun 25;116(26):13137-13142. doi: 10.1073/pnas.1819660116. Epub 2019 Jun 6.

2.

Cellular response upon proliferation in the presence of an active mitotic checkpoint.

Corno A, Chiroli E, Gross F, Vernieri C, Matafora V, Maffini S, Cosentino Lagomarsino M, Bachi A, Ciliberto A.

Life Sci Alliance. 2019 May 8;2(3). pii: e201900380. doi: 10.26508/lsa.201900380. Print 2019 Jun.

3.

Network model of conviction-driven social segregation.

Teza G, Suweis S, Gherardi M, Maritan A, Cosentino Lagomarsino M.

Phys Rev E. 2019 Mar;99(3-1):032310. doi: 10.1103/PhysRevE.99.032310.

PMID:
30999432
4.

Concurrent processes set E. coli cell division.

Micali G, Grilli J, Osella M, Cosentino Lagomarsino M.

Sci Adv. 2018 Nov 7;4(11):eaau3324. doi: 10.1126/sciadv.aau3324. eCollection 2018 Nov.

5.

Subdiffusion of loci and cytoplasmic particles are different in compressed Escherichia coli cells.

Yu S, Sheats J, Cicuta P, Sclavi B, Cosentino Lagomarsino M, Dorfman KD.

Commun Biol. 2018 Oct 24;1:176. doi: 10.1038/s42003-018-0185-5. eCollection 2018.

6.

Dissecting the Control Mechanisms for DNA Replication and Cell Division in E. coli.

Micali G, Grilli J, Marchi J, Osella M, Cosentino Lagomarsino M.

Cell Rep. 2018 Oct 16;25(3):761-771.e4. doi: 10.1016/j.celrep.2018.09.061.

7.

Size control in mammalian cells involves modulation of both growth rate and cell cycle duration.

Cadart C, Monnier S, Grilli J, Sáez PJ, Srivastava N, Attia R, Terriac E, Baum B, Cosentino-Lagomarsino M, Piel M.

Nat Commun. 2018 Aug 16;9(1):3275. doi: 10.1038/s41467-018-05393-0.

8.

The Empirical Fluctuation Pattern of E. coli Division Control.

Grilli J, Cadart C, Micali G, Osella M, Cosentino Lagomarsino M.

Front Microbiol. 2018 Jul 30;9:1541. doi: 10.3389/fmicb.2018.01541. eCollection 2018.

9.

Spontaneous domain formation in disordered copolymers as a mechanism for chromosome structuring.

Negri M, Gherardi M, Tiana G, Cosentino Lagomarsino M.

Soft Matter. 2018 Jul 25;14(29):6128-6136. doi: 10.1039/c8sm00468d.

10.

The evolution of the temporal program of genome replication.

Agier N, Delmas S, Zhang Q, Fleiss A, Jaszczyszyn Y, van Dijk E, Thermes C, Weigt M, Cosentino-Lagomarsino M, Fischer G.

Nat Commun. 2018 Jun 6;9(1):2199. doi: 10.1038/s41467-018-04628-4.

11.

Fractal Folding and Medium Viscoelasticity Contribute Jointly to Chromosome Dynamics.

Polovnikov KE, Gherardi M, Cosentino-Lagomarsino M, Tamm MV.

Phys Rev Lett. 2018 Feb 23;120(8):088101. doi: 10.1103/PhysRevLett.120.088101.

PMID:
29542996
12.

Current quantization and fractal hierarchy in a driven repulsive lattice gas.

Rotondo P, Sellerio AL, Glorioso P, Caracciolo S, Cosentino Lagomarsino M, Gherardi M.

Phys Rev E. 2017 Nov;96(5-1):052141. doi: 10.1103/PhysRevE.96.052141. Epub 2017 Nov 29.

13.

Model of chromosomal loci dynamics in bacteria as fractional diffusion with intermittent transport.

Gherardi M, Calabrese L, Tamm M, Cosentino Lagomarsino M.

Phys Rev E. 2017 Oct;96(4-1):042402. doi: 10.1103/PhysRevE.96.042402. Epub 2017 Oct 4.

PMID:
29347533
14.

Cells Escape an Operational Mitotic Checkpoint through a Stochastic Process.

Bonaiuti P, Chiroli E, Gross F, Corno A, Vernieri C, Štefl M, Cosentino Lagomarsino M, Knop M, Ciliberto A.

Curr Biol. 2018 Jan 8;28(1):28-37.e7. doi: 10.1016/j.cub.2017.11.031. Epub 2017 Dec 14.

15.

Procedures for Model-Guided Data Analysis of Chromosomal Loci Dynamics at Short Time Scales.

Gherardi M, Cosentino Lagomarsino M.

Methods Mol Biol. 2017;1624:291-307. doi: 10.1007/978-1-4939-7098-8_21.

PMID:
28842891
16.

Role of growth rate on the orientational alignment of Escherichia coli in a slit.

Sheats J, Sclavi B, Cosentino Lagomarsino M, Cicuta P, Dorfman KD.

R Soc Open Sci. 2017 Jun 21;4(6):170463. doi: 10.1098/rsos.170463. eCollection 2017 Jun.

17.

Family-specific scaling laws in bacterial genomes.

De Lazzari E, Grilli J, Maslov S, Cosentino Lagomarsino M.

Nucleic Acids Res. 2017 Jul 27;45(13):7615-7622. doi: 10.1093/nar/gkx510.

18.

Nutrient consumption and chain tuning in diatoms exposed to storm-like turbulence.

Dell'Aquila G, Ferrante MI, Gherardi M, Cosentino Lagomarsino M, Ribera d'Alcalà M, Iudicone D, Amato A.

Sci Rep. 2017 May 12;7(1):1828. doi: 10.1038/s41598-017-02084-6.

19.

Both genome and cytosol dynamics change in E. coli challenged with sublethal rifampicin.

Wlodarski M, Raciti B, Kotar J, Cosentino Lagomarsino M, Fraser GM, Cicuta P.

Phys Biol. 2017 Feb 16;14(1):015005. doi: 10.1088/1478-3975/aa5b71.

20.

Step by Step, Cell by Cell: Quantification of the Bacterial Cell Cycle.

Osella M, Tans SJ, Cosentino Lagomarsino M.

Trends Microbiol. 2017 Apr;25(4):250-256. doi: 10.1016/j.tim.2016.12.005. Epub 2017 Jan 13. Review.

PMID:
28094092
21.

Regulation of chain length in two diatoms as a growth-fragmentation process.

Gherardi M, Amato A, Bouly JP, Cheminant S, Ferrante MI, d'Alcalá MR, Iudicone D, Falciatore A, Cosentino Lagomarsino M.

Phys Rev E. 2016 Aug;94(2-1):022418. doi: 10.1103/PhysRevE.94.022418. Epub 2016 Aug 23.

PMID:
27627344
22.

Law of corresponding states for open collaborations.

Gherardi M, Bassetti F, Cosentino Lagomarsino M.

Phys Rev E. 2016 Apr;93:042307. doi: 10.1103/PhysRevE.93.042307. Epub 2016 Apr 12.

23.

Mapping Topoisomerase IV Binding and Activity Sites on the E. coli Genome.

El Sayyed H, Le Chat L, Lebailly E, Vickridge E, Pages C, Cornet F, Cosentino Lagomarsino M, Espéli O.

PLoS Genet. 2016 May 12;12(5):e1006025. doi: 10.1371/journal.pgen.1006025. eCollection 2016 May.

24.

Individuality and universality in the growth-division laws of single E. coli cells.

Kennard AS, Osella M, Javer A, Grilli J, Nghe P, Tans SJ, Cicuta P, Cosentino Lagomarsino M.

Phys Rev E. 2016 Jan;93(1):012408. doi: 10.1103/PhysRevE.93.012408. Epub 2016 Jan 19.

25.

Stochasticity and homeostasis in the E. coli replication and division cycle.

Adiciptaningrum A, Osella M, Moolman MC, Cosentino Lagomarsino M, Tans SJ.

Sci Rep. 2015 Dec 16;5:18261. doi: 10.1038/srep18261.

26.

The nucleoid as a smart polymer.

Scolari VF, Sclavi B, Cosentino Lagomarsino M.

Front Microbiol. 2015 May 8;6:424. doi: 10.3389/fmicb.2015.00424. eCollection 2015. No abstract available.

27.

Dicke simulators with emergent collective quantum computational abilities.

Rotondo P, Cosentino Lagomarsino M, Viola G.

Phys Rev Lett. 2015 Apr 10;114(14):143601. Epub 2015 Apr 6.

28.

Dynamic membrane patterning, signal localization and polarity in living cells.

Zamparo M, Chianale F, Tebaldi C, Cosentino-Lagomarsino M, Nicodemi M, Gamba A.

Soft Matter. 2015 Feb 7;11(5):838-49. doi: 10.1039/c4sm02157f. Epub 2015 Jan 7. Review.

PMID:
25563791
29.

Combined collapse by bridging and self-adhesion in a prototypical polymer model inspired by the bacterial nucleoid.

Scolari VF, Cosentino Lagomarsino M.

Soft Matter. 2015 Mar 7;11(9):1677-87. doi: 10.1039/c4sm02434f.

PMID:
25532064
30.

Speed of evolution in large asexual populations with diminishing returns.

Fumagalli MR, Osella M, Thomen P, Heslot F, Cosentino Lagomarsino M.

J Theor Biol. 2015 Jan 21;365:23-31. doi: 10.1016/j.jtbi.2014.09.042. Epub 2014 Oct 13.

PMID:
25308509
31.

Cross-species gene-family fluctuations reveal the dynamics of horizontal transfers.

Grilli J, Romano M, Bassetti F, Cosentino Lagomarsino M.

Nucleic Acids Res. 2014 Jun;42(11):6850-60. doi: 10.1093/nar/gku378. Epub 2014 May 14.

32.

Concerted control of Escherichia coli cell division.

Osella M, Nugent E, Cosentino Lagomarsino M.

Proc Natl Acad Sci U S A. 2014 Mar 4;111(9):3431-5. doi: 10.1073/pnas.1313715111. Epub 2014 Feb 18.

33.

Evidence for soft bounds in Ubuntu package sizes and mammalian body masses.

Gherardi M, Mandrà S, Bassetti B, Cosentino Lagomarsino M.

Proc Natl Acad Sci U S A. 2013 Dec 24;110(52):21054-8. doi: 10.1073/pnas.1311124110. Epub 2013 Dec 9.

34.

Short-time movement of E. coli chromosomal loci depends on coordinate and subcellular localization.

Javer A, Long Z, Nugent E, Grisi M, Siriwatwetchakul K, Dorfman KD, Cicuta P, Cosentino Lagomarsino M.

Nat Commun. 2013;4:3003. doi: 10.1038/ncomms3003.

PMID:
23764719
35.

Gene silencing and large-scale domain structure of the E. coli genome.

Zarei M, Sclavi B, Cosentino Lagomarsino M.

Mol Biosyst. 2013 Apr 5;9(4):758-67. doi: 10.1039/c3mb25364c.

PMID:
23412141
36.

The spatiotemporal program of replication in the genome of Lachancea kluyveri.

Agier N, Romano OM, Touzain F, Cosentino Lagomarsino M, Fischer G.

Genome Biol Evol. 2013;5(2):370-88. doi: 10.1093/gbe/evt014.

37.

Microfluidic chemostat for measuring single cell dynamics in bacteria.

Long Z, Nugent E, Javer A, Cicuta P, Sclavi B, Cosentino Lagomarsino M, Dorfman KD.

Lab Chip. 2013 Mar 7;13(5):947-54. doi: 10.1039/c2lc41196b. Epub 2013 Jan 18.

PMID:
23334753
38.

Driving potential and noise level determine the synchronization state of hydrodynamically coupled oscillators.

Bruot N, Kotar J, de Lillo F, Cosentino Lagomarsino M, Cicuta P.

Phys Rev Lett. 2012 Oct 19;109(16):164103. Epub 2012 Oct 19.

39.

DnaA and the timing of chromosome replication in Escherichia coli as a function of growth rate.

Grant MA, Saggioro C, Ferrari U, Bassetti B, Sclavi B, Cosentino Lagomarsino M.

BMC Syst Biol. 2011 Dec 21;5:201. doi: 10.1186/1752-0509-5-201.

40.

Joint scaling laws in functional and evolutionary categories in prokaryotic genomes.

Grilli J, Bassetti B, Maslov S, Cosentino Lagomarsino M.

Nucleic Acids Res. 2012 Jan;40(2):530-40. doi: 10.1093/nar/gkr711. Epub 2011 Sep 21.

41.

Ordered structure of the transcription network inherited from the yeast whole-genome duplication.

Fusco D, Grassi L, Bassetti B, Caselle M, Cosentino Lagomarsino M.

BMC Syst Biol. 2010 Jun 3;4:77. doi: 10.1186/1752-0509-4-77.

42.

Minimal two-sphere model of the generation of fluid flow at low Reynolds numbers.

Leoni M, Bassetti B, Kotar J, Cicuta P, Cosentino Lagomarsino M.

Phys Rev E Stat Nonlin Soft Matter Phys. 2010 Mar;81(3 Pt 2):036304. Epub 2010 Mar 4.

PMID:
20365851
43.

Mean-field methods in evolutionary duplication-innovation-loss models for the genome-level repertoire of protein domains.

Angelini A, Amato A, Bianconi G, Bassetti B, Cosentino Lagomarsino M.

Phys Rev E Stat Nonlin Soft Matter Phys. 2010 Feb;81(2 Pt 1):021919. Epub 2010 Feb 22.

PMID:
20365607
44.

Statistical mechanics of the "Chinese restaurant process": lack of self-averaging, anomalous finite-size effects, and condensation.

Bassetti B, Zarei M, Cosentino Lagomarsino M, Bianconi G.

Phys Rev E Stat Nonlin Soft Matter Phys. 2009 Dec;80(6 Pt 2):066118. Epub 2009 Dec 22.

PMID:
20365242
45.

Feedback topology and XOR-dynamics in Boolean networks with varying input structure.

Ciandrini L, Maffi C, Motta A, Bassetti B, Cosentino Lagomarsino M.

Phys Rev E Stat Nonlin Soft Matter Phys. 2009 Aug;80(2 Pt 2):026122. Epub 2009 Aug 21.

PMID:
19792215
46.

Universal features in the genome-level evolution of protein domains.

Cosentino Lagomarsino M, Sellerio AL, Heijning PD, Bassetti B.

Genome Biol. 2009;10(1):R12. doi: 10.1186/gb-2009-10-1-r12. Epub 2009 Jan 30.

47.

A comparative evolutionary study of transcription networks. The global role of feedback and hierachical structures.

Sellerio AL, Bassetti B, Isambert H, Cosentino Lagomarsino M.

Mol Biosyst. 2009 Feb;5(2):170-9. doi: 10.1039/b815339f. Epub 2008 Nov 25.

PMID:
19156263
48.

Hierarchy and feedback in the evolution of the Escherichia coli transcription network.

Cosentino Lagomarsino M, Jona P, Bassetti B, Isambert H.

Proc Natl Acad Sci U S A. 2007 Mar 27;104(13):5516-20. Epub 2007 Mar 19.

49.

Microtubule organization in three-dimensional confined geometries: evaluating the role of elasticity through a combined in vitro and modeling approach.

Cosentino Lagomarsino M, Tanase C, Vos JW, Emons AM, Mulder BM, Dogterom M.

Biophys J. 2007 Feb 1;92(3):1046-57. Epub 2006 Nov 10.

50.

Continuum description of the cytoskeleton: ring formation in the cell cortex.

Zumdieck A, Cosentino Lagomarsino M, Tanase C, Kruse K, Mulder B, Dogterom M, Jülicher F.

Phys Rev Lett. 2005 Dec 16;95(25):258103. Epub 2005 Dec 15.

PMID:
16384514

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