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Items: 1 to 50 of 301

1.

SDG8-mediated histone methylation and RNA processing function in the response to nitrate signaling.

Li Y, Brooks M, Yeoh-Wang J, McCoy RM, Rock TM, Pasquino A, Moon CI, Patrick RM, Tanurdzic M, Ruffel S, Widhalm JR, McCombie WR, Coruzzi GM.

Plant Physiol. 2019 Oct 22. pii: pp.00682.2019. doi: 10.1104/pp.19.00682. [Epub ahead of print]

2.

WRKY1 Mediates Transcriptional Regulation of Light and Nitrogen Signaling Pathways.

Heerah S, Katari M, Penjor R, Coruzzi G, Marshall-Colon A.

Plant Physiol. 2019 Nov;181(3):1371-1388. doi: 10.1104/pp.19.00685. Epub 2019 Aug 13.

3.

iPlant Systems Biology (iPSB): An International Network Hub in the Plant Community.

Falter-Braun P, Brady S, Gutiérrez RA, Coruzzi GM, Krouk G.

Mol Plant. 2019 Jun 3;12(6):727-730. doi: 10.1016/j.molp.2019.05.005. Epub 2019 May 21. No abstract available.

PMID:
31125688
4.

Network Walking charts transcriptional dynamics of nitrogen signaling by integrating validated and predicted genome-wide interactions.

Brooks MD, Cirrone J, Pasquino AV, Alvarez JM, Swift J, Mittal S, Juang CL, Varala K, Gutiérrez RA, Krouk G, Shasha D, Coruzzi GM.

Nat Commun. 2019 Apr 5;10(1):1569. doi: 10.1038/s41467-019-09522-1.

5.

Water impacts nutrient dose responses genome-wide to affect crop production.

Swift J, Adame M, Tranchina D, Henry A, Coruzzi GM.

Nat Commun. 2019 Mar 26;10(1):1374. doi: 10.1038/s41467-019-09287-7.

6.

Temporal transcriptional logic of dynamic regulatory networks underlying nitrogen signaling and use in plants.

Varala K, Marshall-Colón A, Cirrone J, Brooks MD, Pasquino AV, Léran S, Mittal S, Rock TM, Edwards MB, Kim GJ, Ruffel S, McCombie WR, Shasha D, Coruzzi GM.

Proc Natl Acad Sci U S A. 2018 Jun 19;115(25):6494-6499. doi: 10.1073/pnas.1721487115. Epub 2018 May 16.

7.

μChIP-Seq for Genome-Wide Mapping of In Vivo TF-DNA Interactions in Arabidopsis Root Protoplasts.

Para A, Li Y, Coruzzi GM.

Methods Mol Biol. 2018;1761:249-261. doi: 10.1007/978-1-4939-7747-5_19.

PMID:
29525963
8.

Changes in Gene Expression in Space and Time Orchestrate Environmentally Mediated Shaping of Root Architecture.

Walker L, Boddington C, Jenkins D, Wang Y, Grønlund JT, Hulsmans J, Kumar S, Patel D, Moore JD, Carter A, Samavedam S, Bonomo G, Hersh DS, Coruzzi GM, Burroughs NJ, Gifford ML.

Plant Cell. 2017 Oct;29(10):2393-2412. doi: 10.1105/tpc.16.00961. Epub 2017 Sep 11.

9.

Combinatorial interaction network of transcriptomic and phenotypic responses to nitrogen and hormones in the Arabidopsis thaliana root.

Ristova D, Carré C, Pervent M, Medici A, Kim GJ, Scalia D, Ruffel S, Birnbaum KD, Lacombe B, Busch W, Coruzzi GM, Krouk G.

Sci Signal. 2016 Oct 25;9(451):rs13.

PMID:
27811143
10.

A matter of time - How transient transcription factor interactions create dynamic gene regulatory networks.

Swift J, Coruzzi GM.

Biochim Biophys Acta Gene Regul Mech. 2017 Jan;1860(1):75-83. doi: 10.1016/j.bbagrm.2016.08.007. Epub 2016 Aug 18. Review.

11.

Nitrate Transport, Sensing, and Responses in Plants.

O'Brien JA, Vega A, Bouguyon E, Krouk G, Gojon A, Coruzzi G, Gutiérrez RA.

Mol Plant. 2016 Jun 6;9(6):837-56. doi: 10.1016/j.molp.2016.05.004. Epub 2016 May 19. Review.

12.

"Hit-and-Run" transcription: de novo transcription initiated by a transient bZIP1 "hit" persists after the "run".

Doidy J, Li Y, Neymotin B, Edwards MB, Varala K, Gresham D, Coruzzi GM.

BMC Genomics. 2016 Feb 3;17:92. doi: 10.1186/s12864-016-2410-2.

13.

Long-distance nitrate signaling displays cytokinin dependent and independent branches.

Ruffel S, Poitout A, Krouk G, Coruzzi GM, Lacombe B.

J Integr Plant Biol. 2016 Mar;58(3):226-9. doi: 10.1111/jipb.12453. Epub 2016 Feb 23.

PMID:
26619818
14.

"Hit-and-Run" leaves its mark: catalyst transcription factors and chromatin modification.

Varala K, Li Y, Marshall-Colón A, Para A, Coruzzi GM.

Bioessays. 2015 Aug;37(8):851-6. doi: 10.1002/bies.201400205. Epub 2015 Jun 23. Review.

15.

From milliseconds to lifetimes: tracking the dynamic behavior of transcription factors in gene networks.

Li Y, Varala K, Coruzzi GM.

Trends Genet. 2015 Sep;31(9):509-15. doi: 10.1016/j.tig.2015.05.005. Epub 2015 Jun 10. Review.

16.

Cross-Species Network Analysis Uncovers Conserved Nitrogen-Regulated Network Modules in Rice.

Obertello M, Shrivastava S, Katari MS, Coruzzi GM.

Plant Physiol. 2015 Aug;168(4):1830-43. doi: 10.1104/pp.114.255877. Epub 2015 Jun 4.

17.

The histone methyltransferase SDG8 mediates the epigenetic modification of light and carbon responsive genes in plants.

Li Y, Mukherjee I, Thum KE, Tanurdzic M, Katari MS, Obertello M, Edwards MB, McCombie WR, Martienssen RA, Coruzzi GM.

Genome Biol. 2015 Apr 19;16:79. doi: 10.1186/s13059-015-0640-2.

18.

AtNIGT1/HRS1 integrates nitrate and phosphate signals at the Arabidopsis root tip.

Medici A, Marshall-Colon A, Ronzier E, Szponarski W, Wang R, Gojon A, Crawford NM, Ruffel S, Coruzzi GM, Krouk G.

Nat Commun. 2015 Feb 27;6:6274. doi: 10.1038/ncomms7274.

19.

Comparative phylogenomics uncovers the impact of symbiotic associations on host genome evolution.

Delaux PM, Varala K, Edger PP, Coruzzi GM, Pires JC, Ané JM.

PLoS Genet. 2014 Jul 17;10(7):e1004487. doi: 10.1371/journal.pgen.1004487. eCollection 2014 Jul.

20.

Finding a nitrogen niche: a systems integration of local and systemic nitrogen signalling in plants.

Li Y, Krouk G, Coruzzi GM, Ruffel S.

J Exp Bot. 2014 Oct;65(19):5601-10. doi: 10.1093/jxb/eru263. Epub 2014 Jun 24. Review.

PMID:
24963003
21.

Hit-and-run transcriptional control by bZIP1 mediates rapid nutrient signaling in Arabidopsis.

Para A, Li Y, Marshall-Colón A, Varala K, Francoeur NJ, Moran TM, Edwards MB, Hackley C, Bargmann BO, Birnbaum KD, McCombie WR, Krouk G, Coruzzi GM.

Proc Natl Acad Sci U S A. 2014 Jul 15;111(28):10371-6. doi: 10.1073/pnas.1404657111. Epub 2014 Jun 23.

22.

Integrated RNA-seq and sRNA-seq analysis identifies novel nitrate-responsive genes in Arabidopsis thaliana roots.

Vidal EA, Moyano TC, Krouk G, Katari MS, Tanurdzic M, McCombie WR, Coruzzi GM, Gutiérrez RA.

BMC Genomics. 2013 Oct 11;14:701. doi: 10.1186/1471-2164-14-701.

23.

A unified nomenclature of NITRATE TRANSPORTER 1/PEPTIDE TRANSPORTER family members in plants.

Léran S, Varala K, Boyer JC, Chiurazzi M, Crawford N, Daniel-Vedele F, David L, Dickstein R, Fernandez E, Forde B, Gassmann W, Geiger D, Gojon A, Gong JM, Halkier BA, Harris JM, Hedrich R, Limami AM, Rentsch D, Seo M, Tsay YF, Zhang M, Coruzzi G, Lacombe B.

Trends Plant Sci. 2014 Jan;19(1):5-9. doi: 10.1016/j.tplants.2013.08.008. Epub 2013 Sep 18.

PMID:
24055139
24.

Plasticity regulators modulate specific root traits in discrete nitrogen environments.

Gifford ML, Banta JA, Katari MS, Hulsmans J, Chen L, Ristova D, Tranchina D, Purugganan MD, Coruzzi GM, Birnbaum KD.

PLoS Genet. 2013;9(9):e1003760. doi: 10.1371/journal.pgen.1003760. Epub 2013 Sep 5.

25.

Integration of responses within and across Arabidopsis natural accessions uncovers loci controlling root systems architecture.

Rosas U, Cibrian-Jaramillo A, Ristova D, Banta JA, Gifford ML, Fan AH, Zhou RW, Kim GJ, Krouk G, Birnbaum KD, Purugganan MD, Coruzzi GM.

Proc Natl Acad Sci U S A. 2013 Sep 10;110(37):15133-8. doi: 10.1073/pnas.1305883110. Epub 2013 Aug 26. Erratum in: Proc Natl Acad Sci U S A. 2015 May 12;112(19):E2555.

26.

Gene regulatory networks in plants: learning causality from time and perturbation.

Krouk G, Lingeman J, Colon AM, Coruzzi G, Shasha D.

Genome Biol. 2013 Jun 27;14(6):123. doi: 10.1186/gb-2013-14-6-123.

27.

TARGET: a transient transformation system for genome-wide transcription factor target discovery.

Bargmann BO, Marshall-Colon A, Efroni I, Ruffel S, Birnbaum KD, Coruzzi GM, Krouk G.

Mol Plant. 2013 May;6(3):978-80. doi: 10.1093/mp/sst010. Epub 2013 Jan 18. No abstract available.

28.

RootScape: a landmark-based system for rapid screening of root architecture in Arabidopsis.

Ristova D, Rosas U, Krouk G, Ruffel S, Birnbaum KD, Coruzzi GM.

Plant Physiol. 2013 Mar;161(3):1086-96. doi: 10.1104/pp.112.210872. Epub 2013 Jan 18.

29.

Effects of histamine H4 receptor ligands in a mouse model of gastric ulceration.

Adami M, Pozzoli C, Menozzi A, Bertini S, Passeri B, Cantoni AM, Smits R, de Esch I, Leurs R, Coruzzi G.

Pharmacology. 2012;89(5-6):287-94. doi: 10.1159/000337736.

PMID:
22538763
30.

Role of histamine H4 receptors in the gastrointestinal tract.

Coruzzi G, Adami M, Pozzoli C.

Front Biosci (Schol Ed). 2012 Jan 1;4:226-39. Review.

PMID:
22202056
31.

A functional phylogenomic view of the seed plants.

Lee EK, Cibrian-Jaramillo A, Kolokotronis SO, Katari MS, Stamatakis A, Ott M, Chiu JC, Little DP, Stevenson DW, McCombie WR, Martienssen RA, Coruzzi G, Desalle R.

PLoS Genet. 2011 Dec;7(12):e1002411. doi: 10.1371/journal.pgen.1002411. Epub 2011 Dec 15.

32.

Strain-dependent effects of the histamine H₄ receptor antagonist JNJ7777120 in a murine model of acute skin inflammation.

Coruzzi G, Pozzoli C, Adami M, Grandi D, Guido N, Smits R, de Esch I, Leurs R.

Exp Dermatol. 2012 Jan;21(1):32-7. doi: 10.1111/j.1600-0625.2011.01396.x.

PMID:
22151388
33.

Nitrogen economics of root foraging: transitive closure of the nitrate-cytokinin relay and distinct systemic signaling for N supply vs. demand.

Ruffel S, Krouk G, Ristova D, Shasha D, Birnbaum KD, Coruzzi GM.

Proc Natl Acad Sci U S A. 2011 Nov 8;108(45):18524-9. doi: 10.1073/pnas.1108684108. Epub 2011 Oct 24.

34.

Searching for new NO-donor aspirin-like molecules: Furoxanylacyl derivatives of salicylic acid and related furazans.

Lazzarato L, Cena C, Rolando B, Marini E, Lolli ML, Guglielmo S, Guaita E, Morini G, Coruzzi G, Fruttero R, Gasco A.

Bioorg Med Chem. 2011 Oct 1;19(19):5852-60. doi: 10.1016/j.bmc.2011.08.018. Epub 2011 Aug 16.

PMID:
21906954
35.

Selective histamine H₃ and H₄ receptor agonists exert opposite effects against the gastric lesions induced by HCl in the rat stomach.

Coruzzi G, Adami M, Pozzoli C, de Esch IJ, Smits R, Leurs R.

Eur J Pharmacol. 2011 Nov 1;669(1-3):121-7. doi: 10.1016/j.ejphar.2011.07.038. Epub 2011 Aug 5.

PMID:
21839070
36.

High nitrogen insensitive 9 (HNI9)-mediated systemic repression of root NO3- uptake is associated with changes in histone methylation.

Widiez T, El Kafafi el S, Girin T, Berr A, Ruffel S, Krouk G, Vayssières A, Shen WH, Coruzzi GM, Gojon A, Lepetit M.

Proc Natl Acad Sci U S A. 2011 Aug 9;108(32):13329-34. doi: 10.1073/pnas.1017863108. Epub 2011 Jul 25.

37.

A framework integrating plant growth with hormones and nutrients.

Krouk G, Ruffel S, Gutiérrez RA, Gojon A, Crawford NM, Coruzzi GM, Lacombe B.

Trends Plant Sci. 2011 Apr;16(4):178-82. doi: 10.1016/j.tplants.2011.02.004. Epub 2011 Mar 9.

PMID:
21393048
38.

Predictive network modeling of the high-resolution dynamic plant transcriptome in response to nitrate.

Krouk G, Mirowski P, LeCun Y, Shasha DE, Coruzzi GM.

Genome Biol. 2010;11(12):R123. doi: 10.1186/gb-2010-11-12-r123. Epub 2010 Dec 23.

39.

Histamine H(3) receptors are involved in the protective effect of ghrelin against HCl-induced gastric damage in rats.

Adami M, Pozzoli C, Leurs R, Stark H, Coruzzi G.

Pharmacology. 2010;86(5-6):259-66. doi: 10.1159/000320110. Epub 2010 Oct 22.

40.

Measurement of gastric acid secretion in the anaesthetized rat.

Adami M, Coruzzi G.

Curr Protoc Toxicol. 2010 Aug;Chapter 21:Unit 21.5. doi: 10.1002/0471140856.tx2105s45.

PMID:
20967747
41.

Overview of gastrointestinal toxicology.

Coruzzi G.

Curr Protoc Toxicol. 2010 Feb;Chapter 21:Unit 21.1. doi: 10.1002/0471140856.tx2101s43.

PMID:
20967743
42.

Mesotherapy versus Systemic Therapy in the Treatment of Acute Low Back Pain: A Randomized Trial.

Costantino C, Marangio E, Coruzzi G.

Evid Based Complement Alternat Med. 2011;2011. pii: 317183. doi: 10.1155/2011/317183. Epub 2010 Sep 1.

43.

Modeling the global effect of the basic-leucine zipper transcription factor 1 (bZIP1) on nitrogen and light regulation in Arabidopsis.

Obertello M, Krouk G, Katari MS, Runko SJ, Coruzzi GM.

BMC Syst Biol. 2010 Aug 12;4:111. doi: 10.1186/1752-0509-4-111.

44.

Multitarget drugs: synthesis and preliminary pharmacological characterization of zileuton analogues endowed with Dual 5-LO inhibitor and NO-dependent activities.

Boschi D, Giorgis M, Cena C, Talniya NC, Di Stilo A, Morini G, Coruzzi G, Guaita E, Fruttero R, Gasco A.

ChemMedChem. 2010 Sep 3;5(9):1444-9. doi: 10.1002/cmdc.201000198. No abstract available.

45.

Using phylogenomic patterns and gene ontology to identify proteins of importance in plant evolution.

Cibrián-Jaramillo A, De la Torre-Bárcena JE, Lee EK, Katari MS, Little DP, Stevenson DW, Martienssen R, Coruzzi GM, DeSalle R.

Genome Biol Evol. 2010 Jul 12;2:225-39. doi: 10.1093/gbe/evq012.

46.

Synthesis and QSAR of quinazoline sulfonamides as highly potent human histamine H4 receptor inverse agonists.

Smits RA, Adami M, Istyastono EP, Zuiderveld OP, van Dam CM, de Kanter FJ, Jongejan A, Coruzzi G, Leurs R, de Esch IJ.

J Med Chem. 2010 Mar 25;53(6):2390-400. doi: 10.1021/jm901379s.

PMID:
20192225
47.

Functional and histologic assessment of rat gastric mucosa after chronic treatment with sulphurous thermal water.

Coruzzi G, Adami M, Pozzoli C, Solenghi E, Grandi D.

Pharmacology. 2010;85(3):146-52. doi: 10.1159/000280603. Epub 2010 Feb 9.

PMID:
20145426
48.

Nitrate-responsive miR393/AFB3 regulatory module controls root system architecture in Arabidopsis thaliana.

Vidal EA, Araus V, Lu C, Parry G, Green PJ, Coruzzi GM, Gutiérrez RA.

Proc Natl Acad Sci U S A. 2010 Mar 2;107(9):4477-82. doi: 10.1073/pnas.0909571107. Epub 2010 Feb 8.

49.

Nitrate signaling: adaptation to fluctuating environments.

Krouk G, Crawford NM, Coruzzi GM, Tsay YF.

Curr Opin Plant Biol. 2010 Jun;13(3):266-73. doi: 10.1016/j.pbi.2009.12.003. Epub 2010 Jan 21. Review.

PMID:
20093067
50.

In silico evaluation of predicted regulatory interactions in Arabidopsis thaliana.

Nero D, Katari MS, Kelfer J, Tranchina D, Coruzzi GM.

BMC Bioinformatics. 2009 Dec 21;10:435. doi: 10.1186/1471-2105-10-435.

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