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Items: 12

1.

Chromatin Immunoprecipitation Sequencing (ChIP-Seq) for Transcription Factors and Chromatin Factors in Arabidopsis thaliana Roots: From Material Collection to Data Analysis.

Cortijo S, Charoensawan V, Roudier F, Wigge PA.

Methods Mol Biol. 2018;1761:231-248. doi: 10.1007/978-1-4939-7747-5_18.

PMID:
29525962
2.

Transcriptional Regulation of the Ambient Temperature Response by H2A.Z Nucleosomes and HSF1 Transcription Factors in Arabidopsis.

Cortijo S, Charoensawan V, Brestovitsky A, Buning R, Ravarani C, Rhodes D, van Noort J, Jaeger KE, Wigge PA.

Mol Plant. 2017 Oct 9;10(10):1258-1273. doi: 10.1016/j.molp.2017.08.014. Epub 2017 Sep 8.

3.

The G-Box Transcriptional Regulatory Code in Arabidopsis.

Ezer D, Shepherd SJK, Brestovitsky A, Dickinson P, Cortijo S, Charoensawan V, Box MS, Biswas S, Jaeger KE, Wigge PA.

Plant Physiol. 2017 Oct;175(2):628-640. doi: 10.1104/pp.17.01086. Epub 2017 Sep 1.

4.

The evening complex coordinates environmental and endogenous signals in Arabidopsis.

Ezer D, Jung JH, Lan H, Biswas S, Gregoire L, Box MS, Charoensawan V, Cortijo S, Lai X, Stöckle D, Zubieta C, Jaeger KE, Wigge PA.

Nat Plants. 2017 Jun 26;3:17087. doi: 10.1038/nplants.2017.87.

5.

Phytochromes function as thermosensors in Arabidopsis.

Jung JH, Domijan M, Klose C, Biswas S, Ezer D, Gao M, Khattak AK, Box MS, Charoensawan V, Cortijo S, Kumar M, Grant A, Locke JC, Schäfer E, Jaeger KE, Wigge PA.

Science. 2016 Nov 18;354(6314):886-889. Epub 2016 Oct 27.

PMID:
27789797
6.

Genome-wide negative feedback drives transgenerational DNA methylation dynamics in Arabidopsis.

Ito T, Tarutani Y, To TK, Kassam M, Duvernois-Berthet E, Cortijo S, Takashima K, Saze H, Toyoda A, Fujiyama A, Colot V, Kakutani T.

PLoS Genet. 2015 Apr 22;11(4):e1005154. doi: 10.1371/journal.pgen.1005154. eCollection 2015 Apr.

7.

Mapping the epigenetic basis of complex traits.

Cortijo S, Wardenaar R, Colomé-Tatché M, Gilly A, Etcheverry M, Labadie K, Caillieux E, Hospital F, Aury JM, Wincker P, Roudier F, Jansen RC, Colot V, Johannes F.

Science. 2014 Mar 7;343(6175):1145-8. doi: 10.1126/science.1248127. Epub 2014 Feb 6.

PMID:
24505129
8.

Genome-wide analysis of DNA methylation in Arabidopsis using MeDIP-chip.

Cortijo S, Wardenaar R, Colomé-Tatché M, Johannes F, Colot V.

Methods Mol Biol. 2014;1112:125-49. doi: 10.1007/978-1-62703-773-0_9.

PMID:
24478012
9.

Extensive natural epigenetic variation at a de novo originated gene.

Silveira AB, Trontin C, Cortijo S, Barau J, Del Bem LE, Loudet O, Colot V, Vincentz M.

PLoS Genet. 2013 Apr;9(4):e1003437. doi: 10.1371/journal.pgen.1003437. Epub 2013 Apr 11.

10.

MeDIP-HMM: genome-wide identification of distinct DNA methylation states from high-density tiling arrays.

Seifert M, Cortijo S, Colomé-Tatché M, Johannes F, Roudier F, Colot V.

Bioinformatics. 2012 Nov 15;28(22):2930-9. doi: 10.1093/bioinformatics/bts562. Epub 2012 Sep 17.

PMID:
22989518
11.

Features of the Arabidopsis recombination landscape resulting from the combined loss of sequence variation and DNA methylation.

Colomé-Tatché M, Cortijo S, Wardenaar R, Morgado L, Lahouze B, Sarazin A, Etcheverry M, Martin A, Feng S, Duvernois-Berthet E, Labadie K, Wincker P, Jacobsen SE, Jansen RC, Colot V, Johannes F.

Proc Natl Acad Sci U S A. 2012 Oct 2;109(40):16240-5. doi: 10.1073/pnas.1212955109. Epub 2012 Sep 17.

12.

Integrative epigenomic mapping defines four main chromatin states in Arabidopsis.

Roudier F, Ahmed I, Bérard C, Sarazin A, Mary-Huard T, Cortijo S, Bouyer D, Caillieux E, Duvernois-Berthet E, Al-Shikhley L, Giraut L, Després B, Drevensek S, Barneche F, Dèrozier S, Brunaud V, Aubourg S, Schnittger A, Bowler C, Martin-Magniette ML, Robin S, Caboche M, Colot V.

EMBO J. 2011 May 18;30(10):1928-38. doi: 10.1038/emboj.2011.103. Epub 2011 Apr 12.

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