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Items: 1 to 50 of 70

1.

Size distributions of droplets produced by ultrasonic nebulizers.

Kooij S, Astefanei A, Corthals GL, Bonn D.

Sci Rep. 2019 Apr 16;9(1):6128. doi: 10.1038/s41598-019-42599-8.

2.

SimPhospho: a software tool enabling confident phosphosite assignment.

Suni V, Suomi T, Tsubosaka T, Imanishi SY, Elo LL, Corthals GL.

Bioinformatics. 2018 Aug 1;34(15):2690-2692. doi: 10.1093/bioinformatics/bty151.

3.

Fast and Simple Protocols for Mass Spectrometry-Based Proteomics of Small Fresh Frozen Uterine Tissue Sections.

Dapic I, Uwugiaren N, Jansen PJ, Corthals GL.

Anal Chem. 2017 Oct 17;89(20):10769-10775. doi: 10.1021/acs.analchem.7b01937. Epub 2017 Oct 6.

4.

Surface Acoustic Wave Nebulisation Mass Spectrometry for the Fast and Highly Sensitive Characterisation of Synthetic Dyes in Textile Samples.

Astefanei A, van Bommel M, Corthals GL.

J Am Soc Mass Spectrom. 2017 Oct;28(10):2108-2116. doi: 10.1007/s13361-017-1716-x. Epub 2017 Jun 28.

5.

In-Culture Cross-Linking of Bacterial Cells Reveals Large-Scale Dynamic Protein-Protein Interactions at the Peptide Level.

de Jong L, de Koning EA, Roseboom W, Buncherd H, Wanner MJ, Dapic I, Jansen PJ, van Maarseveen JH, Corthals GL, Lewis PJ, Hamoen LW, de Koster CG.

J Proteome Res. 2017 Jul 7;16(7):2457-2471. doi: 10.1021/acs.jproteome.7b00068. Epub 2017 May 26.

6.

A cyclic-olefin-copolymer microfluidic immobilized-enzyme reactor for rapid digestion of proteins from dried blood spots.

Wouters B, Dapic I, Valkenburg TS, Wouters S, Niezen L, Eeltink S, Corthals GL, Schoenmakers PJ.

J Chromatogr A. 2017 Mar 31;1491:36-42. doi: 10.1016/j.chroma.2017.01.078. Epub 2017 Jan 28.

7.

Faecal Metaproteomic Analysis Reveals a Personalized and Stable Functional Microbiome and Limited Effects of a Probiotic Intervention in Adults.

Kolmeder CA, Salojärvi J, Ritari J, de Been M, Raes J, Falony G, Vieira-Silva S, Kekkonen RA, Corthals GL, Palva A, Salonen A, de Vos WM.

PLoS One. 2016 Apr 12;11(4):e0153294. doi: 10.1371/journal.pone.0153294. eCollection 2016.

8.

Quantitative Site-Specific Phosphoproteomics of Trichoderma reesei Signaling Pathways upon Induction of Hydrolytic Enzyme Production.

Nguyen EV, Imanishi SY, Haapaniemi P, Yadav A, Saloheimo M, Corthals GL, Pakula TM.

J Proteome Res. 2016 Feb 5;15(2):457-67. doi: 10.1021/acs.jproteome.5b00796. Epub 2016 Jan 14.

PMID:
26689635
9.

Development of a Quantitative SRM-Based Proteomics Method to Study Iron Metabolism of Synechocystis sp. PCC 6803.

Vuorijoki L, Isojärvi J, Kallio P, Kouvonen P, Aro EM, Corthals GL, Jones PR, Muth-Pawlak D.

J Proteome Res. 2016 Jan 4;15(1):266-79. doi: 10.1021/acs.jproteome.5b00800. Epub 2015 Dec 22.

PMID:
26652789
10.

Using Peptide-Level Proteomics Data for Detecting Differentially Expressed Proteins.

Suomi T, Corthals GL, Nevalainen OS, Elo LL.

J Proteome Res. 2015 Nov 6;14(11):4564-70. doi: 10.1021/acs.jproteome.5b00363. Epub 2015 Sep 29.

PMID:
26380941
11.

Optimization of Statistical Methods Impact on Quantitative Proteomics Data.

Pursiheimo A, Vehmas AP, Afzal S, Suomi T, Chand T, Strauss L, Poutanen M, Rokka A, Corthals GL, Elo LL.

J Proteome Res. 2015 Oct 2;14(10):4118-26. doi: 10.1021/acs.jproteome.5b00183. Epub 2015 Sep 8.

PMID:
26321463
12.

Selenoprotein biosynthesis defect causes progressive encephalopathy with elevated lactate.

Anttonen AK, Hilander T, Linnankivi T, Isohanni P, French RL, Liu Y, Simonović M, Söll D, Somer M, Muth-Pawlak D, Corthals GL, Laari A, Ylikallio E, Lähde M, Valanne L, Lönnqvist T, Pihko H, Paetau A, Lehesjoki AE, Suomalainen A, Tyynismaa H.

Neurology. 2015 Jul 28;85(4):306-15. doi: 10.1212/WNL.0000000000001787. Epub 2015 Jun 26.

13.

Confident site localization using a simulated phosphopeptide spectral library.

Suni V, Imanishi SY, Maiolica A, Aebersold R, Corthals GL.

J Proteome Res. 2015 May 1;14(5):2348-59. doi: 10.1021/acs.jproteome.5b00050. Epub 2015 Mar 27.

PMID:
25774671
14.

Discussion point: reporting guidelines for mass spectrometry imaging.

McDonnell LA, Römpp A, Balluff B, Heeren RM, Albar JP, Andrén PE, Corthals GL, Walch A, Stoeckli M.

Anal Bioanal Chem. 2015 Mar;407(8):2035-45. doi: 10.1007/s00216-014-8322-6. No abstract available.

PMID:
25432304
15.

Proprotein convertase FURIN constrains Th2 differentiation and is critical for host resistance against Toxoplasma gondii.

Oksanen A, Aittomäki S, Jankovic D, Ortutay Z, Pulkkinen K, Hämäläinen S, Rokka A, Corthals GL, Watford WT, Junttila I, O'Shea JJ, Pesu M.

J Immunol. 2014 Dec 1;193(11):5470-9. doi: 10.4049/jimmunol.1401629. Epub 2014 Oct 29.

16.

Protein phosphatase 2A (PP2A) regulatory subunit B'γ interacts with cytoplasmic ACONITASE 3 and modulates the abundance of AOX1A and AOX1D in Arabidopsis thaliana.

Konert G, Trotta A, Kouvonen P, Rahikainen M, Durian G, Blokhina O, Fagerstedt K, Muth D, Corthals GL, Kangasjärvi S.

New Phytol. 2015 Feb;205(3):1250-63. doi: 10.1111/nph.13097. Epub 2014 Oct 13.

17.

Ovarian endometriosis signatures established through discovery and directed mass spectrometry analysis.

Vehmas AP, Muth-Pawlak D, Huhtinen K, Saloniemi-Heinonen T, Jaakkola K, Laajala TD, Kaprio H, Suvitie PA, Aittokallio T, Siitari H, Perheentupa A, Poutanen M, Corthals GL.

J Proteome Res. 2014 Nov 7;13(11):4983-94. doi: 10.1021/pr500384n. Epub 2014 Aug 20.

PMID:
25099244
18.

Cross-correlation of spectral count ranking to validate quantitative proteome measurements.

Kannaste O, Suomi T, Salmi J, Uusipaikka E, Nevalainen O, Corthals GL.

J Proteome Res. 2014 Apr 4;13(4):1957-68. doi: 10.1021/pr401096z. Epub 2014 Mar 26.

PMID:
24611565
19.

A journey through PROTEOSONICS.

Araújo JE, Oliveira E, Kouvonen P, Corthals GL, Lodeiro C, Santos HM, Capelo JL.

Talanta. 2014 Apr;121:71-80. doi: 10.1016/j.talanta.2013.12.054. Epub 2014 Jan 3. Review.

PMID:
24607112
20.

MSiMass list: a public database of identifications for protein MALDI MS imaging.

McDonnell LA, Walch A, Stoeckli M, Corthals GL.

J Proteome Res. 2014 Feb 7;13(2):1138-42. doi: 10.1021/pr400620y. Epub 2013 Dec 13.

PMID:
24313301
21.

Identification of protein interactions involved in cellular signaling.

Westermarck J, Ivaska J, Corthals GL.

Mol Cell Proteomics. 2013 Jul;12(7):1752-63. doi: 10.1074/mcp.R113.027771. Epub 2013 Mar 12. Review.

22.

On-target ultrasonic digestion of proteins.

Santos HM, Kouvonen P, Capelo JL, Corthals GL.

Proteomics. 2013 May;13(9):1423-7. doi: 10.1002/pmic.201200241.

PMID:
23457053
23.

Cathepsin D deficiency induces cytoskeletal changes and affects cell migration pathways in the brain.

Koch S, Scifo E, Rokka A, Trippner P, Lindfors M, Korhonen R, Corthals GL, Virtanen I, Lalowski M, Tyynelä J.

Neurobiol Dis. 2013 Feb;50:107-19. doi: 10.1016/j.nbd.2012.10.004. Epub 2012 Oct 12.

PMID:
23069676
24.

Human serum protein enhances HIV-1 replication and up-regulates the transcription factor AP-1.

Perdomo MF, Hosia W, Jejcic A, Corthals GL, Vahlne A.

Proc Natl Acad Sci U S A. 2012 Oct 23;109(43):17639-44. doi: 10.1073/pnas.1206893109. Epub 2012 Oct 9.

25.

Imaging mass spectrometry: a user’s guide to a new technique for biological and biomedical research. Preface.

McDonnell L, Andrén PE, Corthals GL.

J Proteomics. 2012 Aug 30;75(16):4881-4882. doi: 10.1016/j.jprot.2012.07.033. No abstract available.

PMID:
22901460
26.

Going forward: Increasing the accessibility of imaging mass spectrometry.

McDonnell LA, Heeren RMA, Andrén PE, Stoeckli M, Corthals GL.

J Proteomics. 2012 Aug 30;75(16):5113-5121. doi: 10.1016/j.jprot.2012.05.016. Epub 2012 May 23. Review.

PMID:
22634082
27.

Isotopic labelling of peptides in tissues enhances mass spectrometric profiling.

Santos HM, Kouvonen P, Capelo JL, Corthals GL.

Rapid Commun Mass Spectrom. 2012 Feb 15;26(3):254-62. doi: 10.1002/rcm.5325.

PMID:
22223310
28.

The human proteome project: current state and future direction.

Legrain P, Aebersold R, Archakov A, Bairoch A, Bala K, Beretta L, Bergeron J, Borchers CH, Corthals GL, Costello CE, Deutsch EW, Domon B, Hancock W, He F, Hochstrasser D, Marko-Varga G, Salekdeh GH, Sechi S, Snyder M, Srivastava S, Uhlén M, Wu CH, Yamamoto T, Paik YK, Omenn GS.

Mol Cell Proteomics. 2011 Jul;10(7):M111.009993. doi: 10.1074/mcp.M111.009993.

29.

The transition of the European Proteomics Association into the future.

Corthals GL, Dunn M, James P, Gil C, Penque D, Albar JP, Andrén P, Rabilloud T, Marko-Varga G.

J Proteomics. 2011 Dec 10;75(1):18-22. doi: 10.1016/j.jprot.2011.06.018. Epub 2011 Jun 28.

PMID:
21726672
30.

The human proteome project: Current state and future direction.

Legrain P, Aebersold R, Archakov A, Bairoch A, Bala K, Beretta L, Bergeron J, Borchers C, Corthals GL, Costello CE, Deutsch EW, Domon B, Hancock W, He F, Hochstrasser D, Marko-Varga G, Salekdeh GH, Sechi S, Snyder M, Srivastava S, Uhlen M, Hu CH, Yamamoto T, Paik YK, Omenn GS.

Mol Cell Proteomics. 2011 Apr 29. [Epub ahead of print]

31.

Enrichment and sequencing of phosphopeptides on indium tin oxide coated glass slides.

Kouvonen P, Rainio EM, Suni V, Koskinen P, Corthals GL.

Mol Biosyst. 2011 Jun;7(6):1828-37. doi: 10.1039/c0mb00269k. Epub 2011 Apr 27.

PMID:
21523302
32.

Identification of miR-193b targets in breast cancer cells and systems biological analysis of their functional impact.

Leivonen SK, Rokka A, Ostling P, Kohonen P, Corthals GL, Kallioniemi O, Perälä M.

Mol Cell Proteomics. 2011 Jul;10(7):M110.005322. doi: 10.1074/mcp.M110.005322. Epub 2011 Apr 21.

33.

Data combination from multiple matrix-assisted laser desorption/ionization (MALDI) matrices: opportunities and limitations for MALDI analysis.

Kouvonen P, Rainio EM, Suni V, Koskinen P, Corthals GL.

Rapid Commun Mass Spectrom. 2010 Dec 15;24(23):3493-5. doi: 10.1002/rcm.4785. No abstract available.

PMID:
21072807
34.

"4D Biology for health and disease" workshop report.

Abrahams JP, Apweiler R, Balling R, Bertero MG, Bujnicki JM, Chayen NE, Chène P, Corthals GL, Dyląg T, Förster F, Heck AJ, Henderson PJ, Herwig R, Jehenson P, Kokalj SJ, Laue E, Legrain P, Martens L, Migliorini C, Musacchio A, Podobnik M, Schertler GF, Schreiber G, Sixma TK, Smit AB, Stuart D, Svergun DI, Taussig MJ.

N Biotechnol. 2011 Jul;28(4):291-3. doi: 10.1016/j.nbt.2010.10.003. Epub 2010 Oct 15.

PMID:
20951846
35.

Peptide and protein imaging mass spectrometry in cancer research.

McDonnell LA, Corthals GL, Willems SM, van Remoortere A, van Zeijl RJ, Deelder AM.

J Proteomics. 2010 Sep 10;73(10):1921-44. doi: 10.1016/j.jprot.2010.05.007. Epub 2010 May 25. Review.

PMID:
20510389
36.

Phosphopeptide enrichment with stable spatial coordination on a titanium dioxide coated glass slide.

Imanishi SY, Kouvonen P, Smått JH, Heikkilä M, Peuhu E, Mikhailov A, Ritala M, Lindén M, Corthals GL, Eriksson JE.

Rapid Commun Mass Spectrom. 2009 Dec;23(23):3661-7. doi: 10.1002/rcm.4291.

PMID:
19899184
37.

Nitromatrix provides improved LC-MALDI signals and more protein identifications.

Kouvonen P, McDonnell LA, Heeren RM, Corthals GL.

Proteomics. 2009 Mar;9(6):1662-71. doi: 10.1002/pmic.200800302.

PMID:
19294627
38.

EuPA achieves visibility - an activity report on the first three years.

Dunn MJ, Gil C, Kleinhammer C, Lottspeich F, Pennington S, Sanchez JC, Albar JP, Bini L, Corrales F, Corthals GL, Fountoulakis MM, Hoogland C, James P, Jensen ON, Jiménez C, Jorrín-Novo J, Kraus HJ, Meyer H, Noukakis D, Palagi PM, Penque D, Quinn A, Rabilloud T.

J Proteomics. 2008 Apr 30;71(1):11-8. doi: 10.1016/j.jprot.2008.03.004. Epub 2008 Apr 8.

PMID:
18541470
39.

3rd Annual FinnProt Meeting: from cells to systems.

Korolainen MA, Corthals GL, Kouvonen P, Kurkinen KM, Nyman TA.

Expert Rev Proteomics. 2008 Jun;5(3):389-91. doi: 10.1586/14789450.5.3.389.

PMID:
18532906
40.

Identification of differentially expressed proteins in Ficedula flycatchers.

Buggiotti L, Primmer CR, Kouvonen P, Bures S, Corthals GL, Leder EH.

Proteomics. 2008 May;8(10):2150-3. doi: 10.1002/pmic.200701006.

PMID:
18491324
41.

Promoting proteomics knowledge in Europe: report on the activities of the EuPA Education Committee 2006-2007.

Albar JP, Corthals GL, Gil C, James P, Jensen ON, Palagi PM, Penque D; EuPA Education Committee.

Proteomics. 2007 Sep;7 Suppl 1:90-4.

PMID:
17893857
42.

Reference-facilitated phosphoproteomics: fast and reliable phosphopeptide validation by microLC-ESI-Q-TOF MS/MS.

Imanishi SY, Kochin V, Ferraris SE, de Thonel A, Pallari HM, Corthals GL, Eriksson JE.

Mol Cell Proteomics. 2007 Aug;6(8):1380-91. Epub 2007 May 17.

43.

Analysis of Phosphopeptides by {micro}LC-ESI-MS/MS.

Corthals GL, Wasinger VC, Goodlett DR.

CSH Protoc. 2007 Nov 1;2007:pdb.prot4625. doi: 10.1101/pdb.prot4625.

PMID:
21356967
44.

Offline Micro-IMAC Enrichment of Phosphoproteins.

Corthals GL, Wasinger VC, Goodlett DR.

CSH Protoc. 2007 Nov 1;2007:pdb.prot4624. doi: 10.1101/pdb.prot4624.

PMID:
21356966
45.

Identification of phosphorylation sites using microimmobilized metal affinity chromatography.

Corthals GL, Aebersold R, Goodlett DR.

Methods Enzymol. 2005;405:66-81. Review.

PMID:
16413311
47.

Characterization of heat shock protein 27 phosphorylation sites in renal cell carcinoma.

Tremolada L, Magni F, Valsecchi C, Sarto C, Mocarelli P, Perego R, Cordani N, Favini P, Galli Kienle M, Sanchez JC, Hochstrasser DF, Corthals GL.

Proteomics. 2005 Feb;5(3):788-95.

PMID:
15682460
48.

Matrix-assisted laser desorption/ionization time-of-flight mass spectrometry for quantitation and molecular stability assessment of insulin entrapped within PLGA nanoparticles.

Bilati U, Pasquarello C, Corthals GL, Hochstrasser DF, Allémann E, Doelker E.

J Pharm Sci. 2005 Mar;94(3):688-94.

PMID:
15668947
49.

Correlation of proteomic and transcriptomic profiles of Staphylococcus aureus during the post-exponential phase of growth.

Scherl A, François P, Bento M, Deshusses JM, Charbonnier Y, Converset V, Huyghe A, Walter N, Hoogland C, Appel RD, Sanchez JC, Zimmermann-Ivol CG, Corthals GL, Hochstrasser DF, Schrenzel J.

J Microbiol Methods. 2005 Feb;60(2):247-57.

PMID:
15590099
50.

Tumor protein D52 (TPD52): a novel B-cell/plasma-cell molecule with unique expression pattern and Ca(2+)-dependent association with annexin VI.

Tiacci E, Orvietani PL, Bigerna B, Pucciarini A, Corthals GL, Pettirossi V, Martelli MP, Liso A, Benedetti R, Pacini R, Bolli N, Pileri S, Pulford K, Gambacorta M, Carbone A, Pasquarello C, Scherl A, Robertson H, Sciurpi MT, Alunni-Bistocchi G, Binaglia L, Byrne JA, Falini B.

Blood. 2005 Apr 1;105(7):2812-20. Epub 2004 Dec 2.

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