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Items: 1 to 50 of 53

1.

Non-templated addition and template switching by MMLV-based reverse transcriptases co-occur and compete with each other.

Wulf MG, Maguire S, Humbert P, Dai N, Bei Y, Nichols NM, Corrêa IR Jr, Guan S.

J Biol Chem. 2019 Oct 22. pii: jbc.RA119.010676. doi: 10.1074/jbc.RA119.010676. [Epub ahead of print]

2.

Agonist-induced membrane nanodomain clustering drives GLP-1 receptor responses in pancreatic beta cells.

Buenaventura T, Bitsi S, Laughlin WE, Burgoyne T, Lyu Z, Oqua AI, Norman H, McGlone ER, Klymchenko AS, Corrêa IR Jr, Walker A, Inoue A, Hanyaloglu A, Grimes J, Koszegi Z, Calebiro D, Rutter GA, Bloom SR, Jones B, Tomas A.

PLoS Biol. 2019 Aug 20;17(8):e3000097. doi: 10.1371/journal.pbio.3000097. eCollection 2019 Aug.

3.

The yeast scavenger decapping enzyme DcpS and its application for in vitro RNA recapping.

Wulf MG, Buswell J, Chan SH, Dai N, Marks K, Martin ER, Tzertzinis G, Whipple JM, Corrêa IR Jr, Schildkraut I.

Sci Rep. 2019 Jun 13;9(1):8594. doi: 10.1038/s41598-019-45083-5.

4.

Therminator DNA Polymerase: Modified Nucleotides and Unnatural Substrates.

Gardner AF, Jackson KM, Boyle MM, Buss JA, Potapov V, Gehring AM, Zatopek KM, Corrêa IR Jr, Ong JL, Jack WE.

Front Mol Biosci. 2019 Apr 24;6:28. doi: 10.3389/fmolb.2019.00028. eCollection 2019. Review.

5.

Type II Restriction of Bacteriophage DNA With 5hmdU-Derived Base Modifications.

Flodman K, Tsai R, Xu MY, Corrêa IR Jr, Copelas A, Lee YJ, Xu MQ, Weigele P, Xu SY.

Front Microbiol. 2019 Mar 29;10:584. doi: 10.3389/fmicb.2019.00584. eCollection 2019.

6.

Delayed inhibition mechanism for secondary channel factor regulation of ribosomal RNA transcription.

Stumper SK, Ravi H, Friedman LJ, Mooney RA, Corrêa IR, Gershenson A, Landick R, Gelles J.

Elife. 2019 Feb 5;8. pii: e40576. doi: 10.7554/eLife.40576. [Epub ahead of print]

7.

time-ChIP: A Method to Determine Long-Term Locus-Specific Nucleosome Inheritance.

Siwek W, Gómez-Rodríguez M, Sobral D, Corrêa IR Jr, Jansen LET.

Methods Mol Biol. 2018;1832:131-158. doi: 10.1007/978-1-4939-8663-7_7.

PMID:
30073525
8.

Enhancing Multistep DNA Processing by Solid-Phase Enzyme Catalysis on Polyethylene Glycol Coated Beads.

Li S, Zhang A, Zatopek K, Parvez S, Gardner AF, Corrêa IR Jr, Noren CJ, Xu MQ.

Bioconjug Chem. 2018 Jul 18;29(7):2316-2324. doi: 10.1021/acs.bioconjchem.8b00299. Epub 2018 Jun 21.

PMID:
29864273
9.

Base modifications affecting RNA polymerase and reverse transcriptase fidelity.

Potapov V, Fu X, Dai N, Corrêa IR Jr, Tanner NA, Ong JL.

Nucleic Acids Res. 2018 Jun 20;46(11):5753-5763. doi: 10.1093/nar/gky341.

10.

Targeting GLP-1 receptor trafficking to improve agonist efficacy.

Jones B, Buenaventura T, Kanda N, Chabosseau P, Owen BM, Scott R, Goldin R, Angkathunyakul N, Corrêa IR Jr, Bosco D, Johnson PR, Piemonti L, Marchetti P, Shapiro AMJ, Cochran BJ, Hanyaloglu AC, Inoue A, Tan T, Rutter GA, Tomas A, Bloom SR.

Nat Commun. 2018 Apr 23;9(1):1602. doi: 10.1038/s41467-018-03941-2.

11.

Identification and biosynthesis of thymidine hypermodifications in the genomic DNA of widespread bacterial viruses.

Lee YJ, Dai N, Walsh SE, Müller S, Fraser ME, Kauffman KM, Guan C, Corrêa IR Jr, Weigele PR.

Proc Natl Acad Sci U S A. 2018 Apr 3;115(14):E3116-E3125. doi: 10.1073/pnas.1714812115. Epub 2018 Mar 19.

12.

Light-activated chemical probing of nucleobase solvent accessibility inside cells.

Feng C, Chan D, Joseph J, Muuronen M, Coldren WH, Dai N, Corrêa IR Jr, Furche F, Hadad CM, Spitale RC.

Nat Chem Biol. 2018 Feb 14;14(3):325. doi: 10.1038/nchembio0318-325.

PMID:
29443971
13.

Light-activated chemical probing of nucleobase solvent accessibility inside cells.

Feng C, Chan D, Joseph J, Muuronen M, Coldren WH, Dai N, Corrêa IR Jr, Furche F, Hadad CM, Spitale RC.

Nat Chem Biol. 2018 Mar;14(3):276-283. doi: 10.1038/nchembio.2548. Epub 2018 Jan 15. Erratum in: Nat Chem Biol. 2018 Feb 14;14 (3):325.

14.

A Targeted RNAi Screen Identifies Endocytic Trafficking Factors That Control GLP-1 Receptor Signaling in Pancreatic β-Cells.

Buenaventura T, Kanda N, Douzenis PC, Jones B, Bloom SR, Chabosseau P, Corrêa IR Jr, Bosco D, Piemonti L, Marchetti P, Johnson PR, Shapiro AMJ, Rutter GA, Tomas A.

Diabetes. 2018 Mar;67(3):385-399. doi: 10.2337/db17-0639. Epub 2017 Dec 28.

15.

The non-specific adenine DNA methyltransferase M.EcoGII.

Murray IA, Morgan RD, Luyten Y, Fomenkov A, Corrêa IR Jr, Dai N, Allaw MB, Zhang X, Cheng X, Roberts RJ.

Nucleic Acids Res. 2018 Jan 25;46(2):840-848. doi: 10.1093/nar/gkx1191.

16.

Restriction and modification of deoxyarchaeosine (dG+)-containing phage 9 g DNA.

Tsai R, Corrêa IR, Xu MY, Xu SY.

Sci Rep. 2017 Aug 21;7(1):8348. doi: 10.1038/s41598-017-08864-4.

17.

Using high-throughput barcode sequencing to efficiently map connectomes.

Peikon ID, Kebschull JM, Vagin VV, Ravens DI, Sun YC, Brouzes E, Corrêa IR Jr, Bressan D, Zador AM.

Nucleic Acids Res. 2017 Jul 7;45(12):e115. doi: 10.1093/nar/gkx292.

18.

Dynamics of 5-carboxylcytosine during hepatic differentiation: Potential general role for active demethylation by DNA repair in lineage specification.

Lewis LC, Lo PC, Foster JM, Dai N, Corrêa IR, Durczak PM, Duncan G, Ramsawhook A, Aithal GP, Denning C, Hannan NR, Ruzov A.

Epigenetics. 2017 Apr 3;12(4):277-286. doi: 10.1080/15592294.2017.1292189. Epub 2017 Mar 7.

19.

Mechanism and timing of Mcm2-7 ring closure during DNA replication origin licensing.

Ticau S, Friedman LJ, Champasa K, Corrêa IR Jr, Gelles J, Bell SP.

Nat Struct Mol Biol. 2017 Mar;24(3):309-315. doi: 10.1038/nsmb.3375. Epub 2017 Feb 13.

20.

Metabolic Incorporation of Azide Functionality into Cellular RNA.

Nainar S, Beasley S, Fazio M, Kubota M, Dai N, Corrêa IR Jr, Spitale RC.

Chembiochem. 2016 Nov 17;17(22):2149-2152. doi: 10.1002/cbic.201600300. Epub 2016 Sep 30.

21.

Single-molecule visualization of a formin-capping protein 'decision complex' at the actin filament barbed end.

Bombardier JP, Eskin JA, Jaiswal R, Corrêa IR Jr, Xu MQ, Goode BL, Gelles J.

Nat Commun. 2015 Nov 13;6:8707. doi: 10.1038/ncomms9707.

22.

Binding of 14-3-3 reader proteins to phosphorylated DNMT1 facilitates aberrant DNA methylation and gene expression.

Estève PO, Zhang G, Ponnaluri VK, Deepti K, Chin HG, Dai N, Sagum C, Black K, Corrêa IR Jr, Bedford MT, Cheng X, Pradhan S.

Nucleic Acids Res. 2016 Feb 29;44(4):1642-56. doi: 10.1093/nar/gkv1162. Epub 2015 Nov 8.

23.

Structure of Naegleria Tet-like dioxygenase (NgTet1) in complexes with a reaction intermediate 5-hydroxymethylcytosine DNA.

Hashimoto H, Pais JE, Dai N, Corrêa IR Jr, Zhang X, Zheng Y, Cheng X.

Nucleic Acids Res. 2015 Dec 15;43(22):10713-21. doi: 10.1093/nar/gkv870. Epub 2015 Aug 31.

24.

Small RNA-mediated DNA (cytosine-5) methyltransferase 1 inhibition leads to aberrant DNA methylation.

Zhang G, Estève PO, Chin HG, Terragni J, Dai N, Corrêa IR Jr, Pradhan S.

Nucleic Acids Res. 2015 Jul 13;43(12):6112-24. doi: 10.1093/nar/gkv518. Epub 2015 May 18.

25.

Biochemical characterization of a Naegleria TET-like oxygenase and its application in single molecule sequencing of 5-methylcytosine.

Pais JE, Dai N, Tamanaha E, Vaisvila R, Fomenkov AI, Bitinaite J, Sun Z, Guan S, Corrêa IR Jr, Noren CJ, Cheng X, Roberts RJ, Zheng Y, Saleh L.

Proc Natl Acad Sci U S A. 2015 Apr 7;112(14):4316-21. doi: 10.1073/pnas.1417939112. Epub 2015 Mar 23.

26.

Multivalent site-specific phage modification enhances the binding affinity of receptor ligands.

Beech J, Saleh L, Frentzel J, Figler H, Corrêa IR Jr, Baker B, Ramspacher C, Marshall M, Dasa S, Linden J, Noren CJ, Kelly KA.

Bioconjug Chem. 2015 Mar 18;26(3):529-36. doi: 10.1021/acs.bioconjchem.5b00011. Epub 2015 Mar 4.

27.

A sensitive approach to map genome-wide 5-hydroxymethylcytosine and 5-formylcytosine at single-base resolution.

Sun Z, Dai N, Borgaro JG, Quimby A, Sun D, Corrêa IR Jr, Zheng Y, Zhu Z, Guan S.

Mol Cell. 2015 Feb 19;57(4):750-761. doi: 10.1016/j.molcel.2014.12.035. Epub 2015 Jan 29.

28.

Considerations and protocols for the synthesis of custom protein labeling probes.

Corrêa IR Jr.

Methods Mol Biol. 2015;1266:55-79. doi: 10.1007/978-1-4939-2272-7_4. Review.

PMID:
25560067
29.

Proteomic identification of mammalian cell surface derived glycosylphosphatidylinositol-anchored proteins through selective glycan enrichment.

Cortes LK, Vainauskas S, Dai N, McClung CM, Shah M, Benner JS, Corrêa IR Jr, VerBerkmoes NC, Taron CH.

Proteomics. 2014 Nov;14(21-22):2471-84. doi: 10.1002/pmic.201400148.

30.

Clathrin-independent pathways do not contribute significantly to endocytic flux.

Bitsikas V, Corrêa IR Jr, Nichols BJ.

Elife. 2014 Sep 17;3:e03970. doi: 10.7554/eLife.03970.

31.

Stable cell surface expression of GPI-anchored proteins, but not intracellular transport, depends on their fatty acid structure.

Jaensch N, Corrêa IR Jr, Watanabe R.

Traffic. 2014 Dec;15(12):1305-29. doi: 10.1111/tra.12224. Epub 2014 Oct 12.

32.

Evaluation of fluorophores to label SNAP-tag fused proteins for multicolor single-molecule tracking microscopy in live cells.

Bosch PJ, Corrêa IR Jr, Sonntag MH, Ibach J, Brunsveld L, Kanger JS, Subramaniam V.

Biophys J. 2014 Aug 19;107(4):803-14. doi: 10.1016/j.bpj.2014.06.040.

33.

Probing homodimer formation of epidermal growth factor receptor by selective crosslinking.

Sun X, Dusserre-Bresson F, Baker B, Zhang A, Xu P, Fibbe C, Noren CJ, Corrêa IR Jr, Xu MQ.

Eur J Med Chem. 2014 Dec 17;88:34-41. doi: 10.1016/j.ejmech.2014.07.041. Epub 2014 Jul 14.

PMID:
25042004
34.

Transient accumulation of 5-carboxylcytosine indicates involvement of active demethylation in lineage specification of neural stem cells.

Wheldon LM, Abakir A, Ferjentsik Z, Dudnakova T, Strohbuecker S, Christie D, Dai N, Guan S, Foster JM, Corrêa IR Jr, Loose M, Dixon JE, Sottile V, Johnson AD, Ruzov A.

Cell Rep. 2014 Jun 12;7(5):1353-1361. doi: 10.1016/j.celrep.2014.05.003. Epub 2014 May 29.

35.

Live-cell reporters for fluorescence imaging.

Corrêa IR Jr.

Curr Opin Chem Biol. 2014 Jun;20:36-45. doi: 10.1016/j.cbpa.2014.04.007. Epub 2014 May 15. Review.

PMID:
24835389
36.

A semi-synthetic organism with an expanded genetic alphabet.

Malyshev DA, Dhami K, Lavergne T, Chen T, Dai N, Foster JM, Corrêa IR Jr, Romesberg FE.

Nature. 2014 May 15;509(7500):385-8. doi: 10.1038/nature13314. Epub 2014 May 7.

37.

Methyllysine reader plant homeodomain (PHD) finger protein 20-like 1 (PHF20L1) antagonizes DNA (cytosine-5) methyltransferase 1 (DNMT1) proteasomal degradation.

Estève PO, Terragni J, Deepti K, Chin HG, Dai N, Espejo A, Corrêa IR Jr, Bedford MT, Pradhan S.

J Biol Chem. 2014 Mar 21;289(12):8277-87. doi: 10.1074/jbc.M113.525279. Epub 2014 Feb 3.

38.

Structure of a Naegleria Tet-like dioxygenase in complex with 5-methylcytosine DNA.

Hashimoto H, Pais JE, Zhang X, Saleh L, Fu ZQ, Dai N, Corrêa IR Jr, Zheng Y, Cheng X.

Nature. 2014 Feb 20;506(7488):391-5. doi: 10.1038/nature12905. Epub 2013 Dec 25.

39.

Evaluation of UDP-GlcN derivatives for selective labeling of 5-(hydroxymethyl)cytosine.

Dai N, Bitinaite J, Chin HG, Pradhan S, Corrêa IR Jr.

Chembiochem. 2013 Nov 4;14(16):2144-52. doi: 10.1002/cbic.201300294. Epub 2013 Sep 17.

PMID:
24106095
40.

Alternative spliceosome assembly pathways revealed by single-molecule fluorescence microscopy.

Shcherbakova I, Hoskins AA, Friedman LJ, Serebrov V, Corrêa IR Jr, Xu MQ, Gelles J, Moore MJ.

Cell Rep. 2013 Oct 17;5(1):151-65. doi: 10.1016/j.celrep.2013.08.026. Epub 2013 Sep 26.

41.

Three-color single molecule imaging shows WASP detachment from Arp2/3 complex triggers actin filament branch formation.

Smith BA, Padrick SB, Doolittle LK, Daugherty-Clarke K, Corrêa IR Jr, Xu MQ, Goode BL, Rosen MK, Gelles J.

Elife. 2013 Sep 3;2:e01008. doi: 10.7554/eLife.01008.

42.

The formin Daam1 and fascin directly collaborate to promote filopodia formation.

Jaiswal R, Breitsprecher D, Collins A, Corrêa IR Jr, Xu MQ, Goode BL.

Curr Biol. 2013 Jul 22;23(14):1373-9. doi: 10.1016/j.cub.2013.06.013. Epub 2013 Jul 11.

43.

Segregation of family A G protein-coupled receptor protomers in the plasma membrane.

Gavalas A, Lan TH, Liu Q, Corrêa IR Jr, Javitch JA, Lambert NA.

Mol Pharmacol. 2013 Sep;84(3):346-52. doi: 10.1124/mol.113.086868. Epub 2013 Jun 18.

44.

Substrates for improved live-cell fluorescence labeling of SNAP-tag.

Corrêa IR Jr, Baker B, Zhang A, Sun L, Provost CR, Lukinavičius G, Reymond L, Johnsson K, Xu MQ.

Curr Pharm Des. 2013;19(30):5414-20.

PMID:
23431983
45.

A near-infrared fluorophore for live-cell super-resolution microscopy of cellular proteins.

Lukinavičius G, Umezawa K, Olivier N, Honigmann A, Yang G, Plass T, Mueller V, Reymond L, Corrêa IR Jr, Luo ZG, Schultz C, Lemke EA, Heppenstall P, Eggeling C, Manley S, Johnsson K.

Nat Chem. 2013 Feb;5(2):132-9. doi: 10.1038/nchem.1546. Epub 2013 Jan 6.

PMID:
23344448
46.

Anatomo-clinical and molecular description of liver neotropical echinococcosis caused by Echinococcus oligarthrus in human host.

Soares Mdo C, Rodrigues AL, Moreira Silva CA, Brito EM, Gomes-Gouvêa MS, Corrêa IR, Pinho JR, Malheiros AP, Nunes HM, Póvoa MM.

Acta Trop. 2013 Jan;125(1):110-4. doi: 10.1016/j.actatropica.2012.09.004. Epub 2012 Sep 23.

PMID:
23010160
47.

Clathrin promotes centrosome integrity in early mitosis through stabilization of centrosomal ch-TOG.

Foraker AB, Camus SM, Evans TM, Majeed SR, Chen CY, Taner SB, Corrêa IR Jr, Doxsey SJ, Brodsky FM.

J Cell Biol. 2012 Aug 20;198(4):591-605. doi: 10.1083/jcb.201205116. Epub 2012 Aug 13.

48.

Near-infrared fluorescence imaging of mammalian cells and xenograft tumors with SNAP-tag.

Gong H, Kovar JL, Baker B, Zhang A, Cheung L, Draney DR, Corrêa IR Jr, Xu MQ, Olive DM.

PLoS One. 2012;7(3):e34003. doi: 10.1371/journal.pone.0034003. Epub 2012 Mar 30.

49.

Two-color STED microscopy in living cells.

Pellett PA, Sun X, Gould TJ, Rothman JE, Xu MQ, Corrêa IR Jr, Bewersdorf J.

Biomed Opt Express. 2011 Aug 1;2(8):2364-71. doi: 10.1364/BOE.2.002364. Epub 2011 Jul 22.

50.

Development of SNAP-tag fluorogenic probes for wash-free fluorescence imaging.

Sun X, Zhang A, Baker B, Sun L, Howard A, Buswell J, Maurel D, Masharina A, Johnsson K, Noren CJ, Xu MQ, Corrêa IR Jr.

Chembiochem. 2011 Sep 19;12(14):2217-26. doi: 10.1002/cbic.201100173. Epub 2011 Jul 26.

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