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Responses of the kelp Saccharina latissima (Phaeophyceae) to the warming Arctic: from physiology to transcriptomics.

Li H, Monteiro C, Heinrich S, Bartsch I, Valentin K, Harms L, Glöckner G, Corre E, Bischof K.

Physiol Plant. 2019 Jul 3. doi: 10.1111/ppl.13009. [Epub ahead of print]


Stable isotope probing and metagenomics highlight the effect of plants on uncultured phenanthrene-degrading bacterial consortium in polluted soil.

Thomas F, Corre E, Cébron A.

ISME J. 2019 Jul;13(7):1814-1830. doi: 10.1038/s41396-019-0394-z. Epub 2019 Mar 14.


First Viruses Infecting the Marine Diatom Guinardia delicatula.

Arsenieff L, Simon N, Rigaut-Jalabert F, Le Gall F, Chaffron S, Corre E, Com E, Bigeard E, Baudoux AC.

Front Microbiol. 2019 Jan 9;9:3235. doi: 10.3389/fmicb.2018.03235. eCollection 2018.


Therapeutic Potential of a New Jumbo Phage That Infects Vibrio coralliilyticus, a Widespread Coral Pathogen.

Jacquemot L, Bettarel Y, Monjol J, Corre E, Halary S, Desnues C, Bouvier T, Ferrier-Pagès C, Baudoux AC.

Front Microbiol. 2018 Oct 24;9:2501. doi: 10.3389/fmicb.2018.02501. eCollection 2018.


Comparative Time-Scale Gene Expression Analysis Highlights the Infection Processes of Two Amoebophrya Strains.

Farhat S, Florent I, Noel B, Kayal E, Da Silva C, Bigeard E, Alberti A, Labadie K, Corre E, Aury JM, Rombauts S, Wincker P, Guillou L, Porcel BM.

Front Microbiol. 2018 Oct 2;9:2251. doi: 10.3389/fmicb.2018.02251. eCollection 2018.


Comparative analysis of five Mucor species transcriptomes.

Lebreton A, Meslet-Cladière L, Morin-Sardin S, Coton E, Jany JL, Barbier G, Corre E.

Genomics. 2018 Sep 5. pii: S0888-7543(18)30204-0. doi: 10.1016/j.ygeno.2018.09.003. [Epub ahead of print]


Design of antimicrobial peptides from a cuttlefish database.

Houyvet B, Zanuttini B, Corre E, Le Corguillé G, Henry J, Zatylny-Gaudin C.

Amino Acids. 2018 Nov;50(11):1573-1582. doi: 10.1007/s00726-018-2633-4. Epub 2018 Aug 18.


A de novo approach to disentangle partner identity and function in holobiont systems.

Meng A, Marchet C, Corre E, Peterlongo P, Alberti A, Da Silva C, Wincker P, Pelletier E, Probert I, Decelle J, Le Crom S, Not F, Bittner L.

Microbiome. 2018 Jun 9;6(1):105. doi: 10.1186/s40168-018-0481-9.


Dietary aquaculture by-product hydrolysates: impact on the transcriptomic response of the intestinal mucosa of European seabass (Dicentrarchus labrax) fed low fish meal diets.

Leduc A, Zatylny-Gaudin C, Robert M, Corre E, Corguille GL, Castel H, Lefevre-Scelles A, Fournier V, Gisbert E, Andree KB, Henry J.

BMC Genomics. 2018 May 24;19(1):396. doi: 10.1186/s12864-018-4780-0.


Translatome analysis at the egg-to-embryo transition in sea urchin.

Chassé H, Aubert J, Boulben S, Le Corguillé G, Corre E, Cormier P, Morales J.

Nucleic Acids Res. 2018 May 18;46(9):4607-4621. doi: 10.1093/nar/gky258.


Analysis of the genomic basis of functional diversity in dinoflagellates using a transcriptome-based sequence similarity network.

Meng A, Corre E, Probert I, Gutierrez-Rodriguez A, Siano R, Annamale A, Alberti A, Da Silva C, Wincker P, Le Crom S, Not F, Bittner L.

Mol Ecol. 2018 May;27(10):2365-2380. doi: 10.1111/mec.14579. Epub 2018 May 3.


Adhesive gland transcriptomics uncovers a diversity of genes involved in glue formation in marine tube-building polychaetes.

Buffet JP, Corre E, Duvernois-Berthet E, Fournier J, Lopez PJ.

Acta Biomater. 2018 May;72:316-328. doi: 10.1016/j.actbio.2018.03.037. Epub 2018 Mar 27.


Complete Genome Sequence of the Halophilic Methylotrophic Methanogen Archaeon Methanohalophilus portucalensis Strain FDF-1T.

L'Haridon S, Corre E, Guan Y, Vinu M, La Cono V, Yakimov M, Stingl U, Toffin L, Jebbar M.

Genome Announc. 2018 Jan 18;6(3). pii: e01482-17. doi: 10.1128/genomeA.01482-17.


Crustacean cardioactive peptides: Expression, localization, structure, and a possible involvement in regulation of egg-laying in the cuttlefish Sepia officinalis.

Endress M, Zatylny-Gaudin C, Corre E, Le Corguillé G, Benoist L, Leprince J, Lefranc B, Bernay B, Leduc A, Rangama J, Lafont AG, Bondon A, Henry J.

Gen Comp Endocrinol. 2018 May 1;260:67-79. doi: 10.1016/j.ygcen.2017.12.009. Epub 2017 Dec 24.


Detection of bacterial contaminants and hybrid sequences in the genome of the kelp Saccharina japonica using Taxoblast.

Dittami SM, Corre E.

PeerJ. 2017 Nov 17;5:e4073. doi: 10.7717/peerj.4073. eCollection 2017.


Identification of a moronecidin-like antimicrobial peptide in the venomous fish Pterois volitans: Functional and structural study of pteroicidin-α.

Houyvet B, Bouchon-Navaro Y, Bouchon C, Goux D, Bernay B, Corre E, Zatylny-Gaudin C.

Fish Shellfish Immunol. 2018 Jan;72:318-324. doi: 10.1016/j.fsi.2017.11.003. Epub 2017 Nov 11.


Chloropicophyceae, a new class of picophytoplanktonic prasinophytes.

Lopes Dos Santos A, Pollina T, Gourvil P, Corre E, Marie D, Garrido JL, Rodríguez F, Noël MH, Vaulot D, Eikrem W.

Sci Rep. 2017 Oct 25;7(1):14019. doi: 10.1038/s41598-017-12412-5.


Nitric Oxide Mediates Nitrite-Sensing and Acclimation and Triggers a Remodeling of Lipids.

Dolch LJ, Lupette J, Tourcier G, Bedhomme M, Collin S, Magneschi L, Conte M, Seddiki K, Richard C, Corre E, Fourage L, Laeuffer F, Richards R, Reith M, Rébeillé F, Jouhet J, McGinn P, Maréchal E.

Plant Physiol. 2017 Nov;175(3):1407-1423. doi: 10.1104/pp.17.01042. Epub 2017 Sep 18.


Acute pancreatitis in immunocompromised patients: beware of varicella zoster virus primo-infection.

Picod A, Corre E, Maury E, Duriez P, Hoyeau N, Coppo P.

Clin Case Rep. 2017 Jun 22;5(8):1261-1263. doi: 10.1002/ccr3.1053. eCollection 2017 Aug.


Characterization of the neuropeptidome of a Southern Ocean decapod, the Antarctic shrimp Chorismus antarcticus: Focusing on a new decapod ITP-like peptide belonging to the CHH peptide family.

Toullec JY, Corre E, Mandon P, Gonzalez-Aravena M, Ollivaux C, Lee CY.

Gen Comp Endocrinol. 2017 Oct 1;252:60-78. doi: 10.1016/j.ygcen.2017.07.015. Epub 2017 Jul 17.


The metagenomic data life-cycle: standards and best practices.

Ten Hoopen P, Finn RD, Bongo LA, Corre E, Fosso B, Meyer F, Mitchell A, Pelletier E, Pesole G, Santamaria M, Willassen NP, Cochrane G.

Gigascience. 2017 Aug 1;6(8):1-11. doi: 10.1093/gigascience/gix047.


A Large and Consistent Phylogenomic Dataset Supports Sponges as the Sister Group to All Other Animals.

Simion P, Philippe H, Baurain D, Jager M, Richter DJ, Di Franco A, Roure B, Satoh N, Quéinnec É, Ereskovsky A, Lapébie P, Corre E, Delsuc F, King N, Wörheide G, Manuel M.

Curr Biol. 2017 Apr 3;27(7):958-967. doi: 10.1016/j.cub.2017.02.031. Epub 2017 Mar 16.


Herbivore-induced chemical and molecular responses of the kelps Laminaria digitata and Lessonia spicata.

Ritter A, Cabioch L, Brillet-Guéguen L, Corre E, Cosse A, Dartevelle L, Duruflé H, Fasshauer C, Goulitquer S, Thomas F, Correa JA, Potin P, Faugeron S, Leblanc C.

PLoS One. 2017 Mar 2;12(3):e0173315. doi: 10.1371/journal.pone.0173315. eCollection 2017.


Complete Genome Sequence of Methanohalophilus halophilus DSM 3094T, Isolated from a Cyanobacterial Mat and Bottom Deposits at Hamelin Pool, Shark Bay, Northwestern Australia.

L'Haridon S, Corre E, Guan Y, Vinu M, La Cono V, Yakimov M, Stingl U, Toffin L, Jebbar M.

Genome Announc. 2017 Feb 16;5(7). pii: e01604-16. doi: 10.1128/genomeA.01604-16.


Erratum to: Bioinformatics Pipeline for Transcriptome Sequencing Analysis.

Djebali S, Wucher V, Foissac S, Hitte C, Corre E, Derrien T.

Methods Mol Biol. 2017;1468:E1. No abstract available.


Re-annotation, improved large-scale assembly and establishment of a catalogue of noncoding loci for the genome of the model brown alga Ectocarpus.

Cormier A, Avia K, Sterck L, Derrien T, Wucher V, Andres G, Monsoor M, Godfroy O, Lipinska A, Perrineau MM, Van De Peer Y, Hitte C, Corre E, Coelho SM, Cock JM.

New Phytol. 2017 Apr;214(1):219-232. doi: 10.1111/nph.14321. Epub 2016 Nov 21.


Responses of the arcto-boreal krill species Thysanoessa inermis to variations in water temperature: coupling Hsp70 isoform expressions with metabolism.

Huenerlage K, Cascella K, Corre E, Toomey L, Lee CY, Buchholz F, Toullec JY.

Cell Stress Chaperones. 2016 Nov;21(6):969-981. Epub 2016 Aug 25.


Bioinformatics Pipeline for Transcriptome Sequencing Analysis.

Djebali S, Wucher V, Foissac S, Hitte C, Corre E, Derrien T.

Methods Mol Biol. 2017;1468:201-19. doi: 10.1007/978-1-4939-4035-6_14. Erratum in: Methods Mol Biol. 2017;1468:E1.


Physiological adjustments and transcriptome reprogramming are involved in the acclimation to salinity gradients in diatoms.

Bussard A, Corre E, Hubas C, Duvernois-Berthet E, Le Corguillé G, Jourdren L, Coulpier F, Claquin P, Lopez PJ.

Environ Microbiol. 2017 Mar;19(3):909-925. doi: 10.1111/1462-2920.13398. Epub 2016 Jun 27.


Clam focal and systemic immune responses to QPX infection revealed by RNA-seq technology.

Wang K, del Castillo C, Corre E, Pales Espinosa E, Allam B.

BMC Genomics. 2016 Feb 27;17:146. doi: 10.1186/s12864-016-2493-9.


[Telemedicine in thrombotic microangiopathies: A way forward in rare diseases requiring emergency care].

Coppo P, Corre E, Rondeau E, Benhamou Y, Bachet A, Stépanian A, Veyradier A; Centre de référence des microangiopathies thrombotiques.

Rev Med Interne. 2016 Aug;37(8):514-20. doi: 10.1016/j.revmed.2015.10.354. Epub 2015 Dec 8. French.


Neuropeptidome of the Cephalopod Sepia officinalis: Identification, Tissue Mapping, and Expression Pattern of Neuropeptides and Neurohormones during Egg Laying.

Zatylny-Gaudin C, Cornet V, Leduc A, Zanuttini B, Corre E, Le Corguillé G, Bernay B, Garderes J, Kraut A, Couté Y, Henry J.

J Proteome Res. 2016 Jan 4;15(1):48-67. doi: 10.1021/acs.jproteome.5b00463. Epub 2015 Dec 18.


WiseScaffolder: an algorithm for the semi-automatic scaffolding of Next Generation Sequencing data.

Farrant GK, Hoebeke M, Partensky F, Andres G, Corre E, Garczarek L.

BMC Bioinformatics. 2015 Sep 3;16:281. doi: 10.1186/s12859-015-0705-y.


Amelotin Gene Structure and Expression during Enamel Formation in the Opossum Monodelphis domestica.

Gasse B, Liu X, Corre E, Sire JY.

PLoS One. 2015 Jul 17;10(7):e0133314. doi: 10.1371/journal.pone.0133314. eCollection 2015.


How Egg Case Proteins Can Protect Cuttlefish Offspring?

Cornet V, Henry J, Goux D, Duval E, Bernay B, Le Corguillé G, Corre E, Zatylny-Gaudin C.

PLoS One. 2015 Jul 13;10(7):e0132836. doi: 10.1371/journal.pone.0132836. eCollection 2015.


The Toll/NF-κB pathway in cuttlefish symbiotic accessory nidamental gland.

Cornet V, Henry J, Corre E, Le Corguillé G, Zatylny-Gaudin C.

Dev Comp Immunol. 2015 Nov;53(1):42-6. doi: 10.1016/j.dci.2015.06.016. Epub 2015 Jul 2.


Host-microbe interactions as a driver of acclimation to salinity gradients in brown algal cultures.

Dittami SM, Duboscq-Bidot L, Perennou M, Gobet A, Corre E, Boyen C, Tonon T.

ISME J. 2016 Jan;10(1):51-63. doi: 10.1038/ismej.2015.104. Epub 2015 Jun 26.


Transcriptome analyses to investigate symbiotic relationships between marine protists.

Balzano S, Corre E, Decelle J, Sierra R, Wincker P, Da Silva C, Poulain J, Pawlowski J, Not F.

Front Microbiol. 2015 Mar 17;6:98. doi: 10.3389/fmicb.2015.00098. eCollection 2015.


Diversification, evolution and sub-functionalization of 70kDa heat-shock proteins in two sister species of antarctic krill: differences in thermal habitats, responses and implications under climate change.

Cascella K, Jollivet D, Papot C, Léger N, Corre E, Ravaux J, Clark MS, Toullec JY.

PLoS One. 2015 Apr 2;10(4):e0121642. doi: 10.1371/journal.pone.0121642. eCollection 2015.


Sexual dimorphism and the evolution of sex-biased gene expression in the brown alga ectocarpus.

Lipinska A, Cormier A, Luthringer R, Peters AF, Corre E, Gachon CM, Cock JM, Coelho SM.

Mol Biol Evol. 2015 Jun;32(6):1581-97. doi: 10.1093/molbev/msv049. Epub 2015 Feb 27.


A haploid system of sex determination in the brown alga Ectocarpus sp.

Ahmed S, Cock JM, Pessia E, Luthringer R, Cormier A, Robuchon M, Sterck L, Peters AF, Dittami SM, Corre E, Valero M, Aury JM, Roze D, Van de Peer Y, Bothwell J, Marais GA, Coelho SM.

Curr Biol. 2014 Sep 8;24(17):1945-57. doi: 10.1016/j.cub.2014.07.042. Epub 2014 Aug 28.


Transcriptomic and peptidomic analysis of protein hydrolysates from the white shrimp (L. vannamei).

Robert M, Zatylny-Gaudin C, Fournier V, Corre E, Le Corguillé G, Bernay B, Henry J.

J Biotechnol. 2014 Sep 30;186:30-7. doi: 10.1016/j.jbiotec.2014.06.020. Epub 2014 Jul 3.


Dual role of the cuttlefish salivary proteome in defense and predation.

Cornet V, Henry J, Corre E, Le Corguille G, Zanuttini B, Zatylny-Gaudin C.

J Proteomics. 2014 Aug 28;108:209-22. doi: 10.1016/j.jprot.2014.05.019. Epub 2014 Jun 2.


Pallial mucus of the oyster Crassostrea virginica regulates the expression of putative virulence genes of its pathogen Perkinsus marinus.

Pales Espinosa E, Corre E, Allam B.

Int J Parasitol. 2014 Apr;44(5):305-17. doi: 10.1016/j.ijpara.2014.01.006. Epub 2014 Feb 18.


Comparative transcriptome of wild type and selected strains of the microalgae Tisochrysis lutea provides insights into the genetic basis, lipid metabolism and the life cycle.

Carrier G, Garnier M, Le Cunff L, Bougaran G, Probert I, De Vargas C, Corre E, Cadoret JP, Saint-Jean B.

PLoS One. 2014 Jan 29;9(1):e86889. doi: 10.1371/journal.pone.0086889. eCollection 2014.


Transcriptome and peptidome characterisation of the main neuropeptides and peptidic hormones of a euphausiid: the Ice Krill, Euphausia crystallorophias.

Toullec JY, Corre E, Bernay B, Thorne MA, Cascella K, Ollivaux C, Henry J, Clark MS.

PLoS One. 2013 Aug 21;8(8):e71609. doi: 10.1371/journal.pone.0071609. eCollection 2013.


First insights into the microbiome of a carnivorous sponge.

Dupont S, Corre E, Li Y, Vacelet J, Bourguet-Kondracki ML.

FEMS Microbiol Ecol. 2013 Dec;86(3):520-31. doi: 10.1111/1574-6941.12178. Epub 2013 Aug 5.


Double-delayed intensification paediatric protocol without radiotherapy is an efficient treatment in adult lymphoblastic lymphoma.

Corre E, Marjanovic Z, Lapusan S, Vekhoff A, Hirsch P, Marie JP, Legrand O.

Hematol Oncol. 2012 Dec;30(4):206-9. doi: 10.1002/hon.2007. Epub 2012 Jan 23.


Conjugating effects of symbionts and environmental factors on gene expression in deep-sea hydrothermal vent mussels.

Boutet I, Ripp R, Lecompte O, Dossat C, Corre E, Tanguy A, Lallier FH.

BMC Genomics. 2011 Oct 28;12:530. doi: 10.1186/1471-2164-12-530.


ATP Binding Cassette transporters associated with chemoresistance: transcriptional profiling in extreme cohorts and their prognostic impact in a cohort of 281 acute myeloid leukemia patients.

Marzac C, Garrido E, Tang R, Fava F, Hirsch P, De Benedictis C, Corre E, Lapusan S, Lallemand JY, Marie JP, Jacquet E, Legrand O.

Haematologica. 2011 Sep;96(9):1293-301. doi: 10.3324/haematol.2010.031823. Epub 2011 May 23.

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