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Items: 29

1.

Transcriptional profiling of stage specific gene expression in the parasitic ciliate Ichthyophthirius multifiliis.

Cassidy-Hanley DM, Cordonnier-Pratt MM, Pratt LH, Devine C, Mozammal Hossain M, Dickerson HW, Clark TG.

Mol Biochem Parasitol. 2011 Jul-Aug;178(1-2):29-39. doi: 10.1016/j.molbiopara.2011.04.004. Epub 2011 Apr 16.

PMID:
21524669
2.

EST and EST-SSR marker resources for Iris.

Tang S, Okashah RA, Cordonnier-Pratt MM, Pratt LH, Ed Johnson V, Taylor CA, Arnold ML, Knapp SJ.

BMC Plant Biol. 2009 Jun 10;9:72. doi: 10.1186/1471-2229-9-72.

3.

MAGIC database and interfaces: an integrated package for gene discovery and expression.

Cordonnier-Pratt MM, Liang C, Wang H, Kolychev DS, Sun F, Freeman R, Sullivan R, Pratt LH.

Comp Funct Genomics. 2004;5(3):268-75. doi: 10.1002/cfg.399.

4.

cDNA sequences for transcription factors and signaling proteins of the hemichordate Saccoglossus kowalevskii: efficacy of the expressed sequence tag (EST) approach for evolutionary and developmental studies of a new organism.

Freeman RM Jr, Wu M, Cordonnier-Pratt MM, Pratt LH, Gruber CE, Smith M, Lander ES, Stange-Thomann N, Lowe CJ, Gerhart J, Kirschner M.

Biol Bull. 2008 Jun;214(3):284-302.

PMID:
18574105
5.

Sequence analysis of bacterial artificial chromosome clones from the apospory-specific genomic region of Pennisetum and Cenchrus.

Conner JA, Goel S, Gunawan G, Cordonnier-Pratt MM, Johnson VE, Liang C, Wang H, Pratt LH, Mullet JE, DeBarry J, Yang L, Bennetzen JL, Klein PE, Ozias-Akins P.

Plant Physiol. 2008 Jul;147(3):1396-411. doi: 10.1104/pp.108.119081. Epub 2008 May 28.

6.

A functional genomics investigation of allelochemical biosynthesis in Sorghum bicolor root hairs.

Baerson SR, Dayan FE, Rimando AM, Nanayakkara NP, Liu CJ, Schröder J, Fishbein M, Pan Z, Kagan IA, Pratt LH, Cordonnier-Pratt MM, Duke SO.

J Biol Chem. 2008 Feb 8;283(6):3231-47. Epub 2007 Nov 12.

7.

Overexpression of homologous phytochrome genes in tomato: exploring the limits in photoperception.

Husaineid SS, Kok RA, Schreuder ME, Hanumappa M, Cordonnier-Pratt MM, Pratt LH, van der Plas LH, van der Krol AR.

J Exp Bot. 2007;58(3):615-26. Epub 2007 Jan 23.

PMID:
17251177
8.

MAGIC-SPP: a database-driven DNA sequence processing package with associated management tools.

Liang C, Sun F, Wang H, Qu J, Freeman RM Jr, Pratt LH, Cordonnier-Pratt MM.

BMC Bioinformatics. 2006 Mar 7;7:115.

9.

Water stress-responsive genes in loblolly pine (Pinus taeda) roots identified by analyses of expressed sequence tag libraries.

Lorenz WW, Sun F, Liang C, Kolychev D, Wang H, Zhao X, Cordonnier-Pratt MM, Pratt LH, Dean JF.

Tree Physiol. 2006 Jan;26(1):1-16.

PMID:
16203709
10.

Sorghum expressed sequence tags identify signature genes for drought, pathogenesis, and skotomorphogenesis from a milestone set of 16,801 unique transcripts.

Pratt LH, Liang C, Shah M, Sun F, Wang H, Reid SP, Gingle AR, Paterson AH, Wing R, Dean R, Klein R, Nguyen HT, Ma HM, Zhao X, Morishige DT, Mullet JE, Cordonnier-Pratt MM.

Plant Physiol. 2005 Oct;139(2):869-84. Epub 2005 Sep 16.

11.

Sorghum bicolor's transcriptome response to dehydration, high salinity and ABA.

Buchanan CD, Lim S, Salzman RA, Kagiampakis I, Morishige DT, Weers BD, Klein RR, Pratt LH, Cordonnier-Pratt MM, Klein PE, Mullet JE.

Plant Mol Biol. 2005 Jul;58(5):699-720.

PMID:
16158244
12.

Transcriptional profiling of sorghum induced by methyl jasmonate, salicylic acid, and aminocyclopropane carboxylic acid reveals cooperative regulation and novel gene responses.

Salzman RA, Brady JA, Finlayson SA, Buchanan CD, Summer EJ, Sun F, Klein PE, Klein RR, Pratt LH, Cordonnier-Pratt MM, Mullet JE.

Plant Physiol. 2005 May;138(1):352-68. Epub 2005 Apr 29.

13.
14.

The phytochrome gene family in tomato and the rapid differential evolution of this family in angiosperms.

Alba R, Kelmenson PM, Cordonnier-Pratt MM, Pratt LH.

Mol Biol Evol. 2000 Mar;17(3):362-73.

PMID:
10723737
15.

Characterization of the gene encoding the apoprotein of phytochrome B2 in tomato, and identification of molecular lesions in two mutant alleles.

Kerckhoffs LH, Kelmenson PM, Schreuder ME, Kendrick CI, Kendrick RE, Hanhart CJ, Koornneef M, Pratt LH, Cordonnier-Pratt MM.

Mol Gen Genet. 1999 Jul;261(6):901-7.

PMID:
10485280
16.

A photoperiod-insensitive barley line contains a light-labile phytochrome B

Hanumappa M, Pratt LH, Cordonnier-Pratt MM, Deitzer GF.

Plant Physiol. 1999 Mar;119(3):1033-40.

17.

Characterization of tomato PHYB1 and identification of molecular defects in four mutant alleles.

Lazarova GI, Kubota T, Frances S, Peters JL, Hughes MJ, Brandstädter J, Széll M, Matsui M, Kendrick RE, Cordonnier-Pratt MM, Pratt LH.

Plant Mol Biol. 1998 Dec;38(6):1137-46.

PMID:
9869419
18.

Molecular analysis of PHYA in wild-type and phytochrome A-deficient mutants of tomato.

Lazarova GI, Kerckhoffs LH, Brandstädter J, Matsui M, Kendrick RE, Cordonnier-Pratt MM, Pratt LH.

Plant J. 1998 Jun;14(6):653-62.

19.

Temporal and photoregulated expression of five tomato phytochrome genes.

Hauser BA, Cordonnier-Pratt MM, Pratt LH.

Plant J. 1998 May;14(4):431-9.

20.

Evidence that the phytochrome gene family in black cottonwood has one PHYA locus and two PHYB loci but lacks members of the PHYC/F and PHYE subfamilies.

Howe GT, Bucciaglia PA, Hackett WP, Furnier GR, Cordonnier-Pratt MM, Gardner G.

Mol Biol Evol. 1998 Feb;15(2):160-75.

PMID:
9491613
21.

The sorghum photoperiod sensitivity gene, Ma3, encodes a phytochrome B.

Childs KL, Miller FR, Cordonnier-Pratt MM, Pratt LH, Morgan PW, Mullet JE.

Plant Physiol. 1997 Feb;113(2):611-9.

22.

The mapping of phytochrome genes and photomorphogenic mutants of tomato.

van Tuinen A, Koornneef M, Cordonnier-Pratt MM, Pratt LH, Verkerk R, Zabel P.

Theor Appl Genet. 1997 Jan;94(1):115-22. doi: 10.1007/s001220050389.

PMID:
19352753
23.
24.

The phytochrome gene family in tomato includes a novel subfamily.

Hauser BA, Cordonnier-Pratt MM, Daniel-Vedele F, Pratt LH.

Plant Mol Biol. 1995 Dec;29(6):1143-55.

PMID:
8616214
26.

Identification of two loci involved in phytochrome expression in Nicotiana plumbaginifolia and lethality of the corresponding double mutant.

Kraepiel Y, Jullien M, Cordonnier-Pratt MM, Pratt L.

Mol Gen Genet. 1994 Mar;242(5):559-65.

PMID:
8121413
27.

Spatial distribution of three phytochromes in dark- and light-grown Avena sativa L.

Wang YC, Cordonnier-Pratt MM, Pratt LH.

Planta. 1993 Mar;189(3):391-6. doi: 10.1007/BF00194436.

PMID:
24178496
28.

Temporal and light regulation of the expression of three phytochromes in germinating seeds and young seedlings of Avena sativa L.

Wang YC, Cordonnier-Pratt MM, Pratt LH.

Planta. 1993 Mar;189(3):384-90. doi: 10.1007/BF00194435.

PMID:
24178495
29.

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