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Items: 1 to 50 of 121

1.

Improved outcomes in neonates who require venoarterial extracorporeal membrane oxygenation after the Norwood procedure.

De Jesus-Brugman N, Hobson MJ, Herrmann JL, Friedman ML, Cordes T, Mastropietro CW.

Int J Artif Organs. 2019 Oct 17:391398819882020. doi: 10.1177/0391398819882020. [Epub ahead of print]

PMID:
31623516
2.

An integrated transport mechanism of the maltose ABC importer.

Mächtel R, Narducci A, Griffith DA, Cordes T, Orelle C.

Res Microbiol. 2019 Nov - Dec;170(8):321-337. doi: 10.1016/j.resmic.2019.09.004. Epub 2019 Sep 24.

3.

Single-Molecule Observation of Ligand Binding and Conformational Changes in FeuA.

de Boer M, Gouridis G, Muthahari YA, Cordes T.

Biophys J. 2019 Nov 5;117(9):1642-1654. doi: 10.1016/j.bpj.2019.08.005. Epub 2019 Aug 12.

4.

ABCE1 Controls Ribosome Recycling by an Asymmetric Dynamic Conformational Equilibrium.

Gouridis G, Hetzert B, Kiosze-Becker K, de Boer M, Heinemann H, Nürenberg-Goloub E, Cordes T, Tampé R.

Cell Rep. 2019 Jul 16;28(3):723-734.e6. doi: 10.1016/j.celrep.2019.06.052.

5.

ColiCoords: A Python package for the analysis of bacterial fluorescence microscopy data.

Smit JH, Li Y, Warszawik EM, Herrmann A, Cordes T.

PLoS One. 2019 Jun 19;14(6):e0217524. doi: 10.1371/journal.pone.0217524. eCollection 2019.

6.

Quantifying Intermediary Metabolism and Lipogenesis in Cultured Mammalian Cells Using Stable Isotope Tracing and Mass Spectrometry.

Cordes T, Metallo CM.

Methods Mol Biol. 2019;1978:219-241. doi: 10.1007/978-1-4939-9236-2_14.

PMID:
31119666
7.

Conformational and dynamic plasticity in substrate-binding proteins underlies selective transport in ABC importers.

de Boer M, Gouridis G, Vietrov R, Begg SL, Schuurman-Wolters GK, Husada F, Eleftheriadis N, Poolman B, McDevitt CA, Cordes T.

Elife. 2019 Mar 22;8. pii: e44652. doi: 10.7554/eLife.44652.

8.

Increased Serine and One-Carbon Pathway Metabolism by PKCλ/ι Deficiency Promotes Neuroendocrine Prostate Cancer.

Reina-Campos M, Linares JF, Duran A, Cordes T, L'Hermitte A, Badur MG, Bhangoo MS, Thorson PK, Richards A, Rooslid T, Garcia-Olmo DC, Nam-Cha SY, Salinas-Sanchez AS, Eng K, Beltran H, Scott DA, Metallo CM, Moscat J, Diaz-Meco MT.

Cancer Cell. 2019 Mar 18;35(3):385-400.e9. doi: 10.1016/j.ccell.2019.01.018. Epub 2019 Feb 28.

PMID:
30827887
9.

On the impact of competing intra- and intermolecular triplet-state quenching on photobleaching and photoswitching kinetics of organic fluorophores.

Smit JH, van der Velde JHM, Huang J, Trauschke V, Henrikus SS, Chen S, Eleftheriadis N, Warszawik EM, Herrmann A, Cordes T.

Phys Chem Chem Phys. 2019 Feb 13;21(7):3721-3733. doi: 10.1039/c8cp05063e.

PMID:
30499568
10.

Oncogenic R132 IDH1 Mutations Limit NADPH for De Novo Lipogenesis through (D)2-Hydroxyglutarate Production in Fibrosarcoma Cells.

Badur MG, Muthusamy T, Parker SJ, Ma S, McBrayer SK, Cordes T, Magana JH, Guan KL, Metallo CM.

Cell Rep. 2018 Nov 6;25(6):1680. doi: 10.1016/j.celrep.2018.10.099. No abstract available.

11.

Oncogenic R132 IDH1 Mutations Limit NADPH for De Novo Lipogenesis through (D)2-Hydroxyglutarate Production in Fibrosarcoma Sells.

Badur MG, Muthusamy T, Parker SJ, Ma S, McBrayer SK, Cordes T, Magana JH, Guan KL, Metallo CM.

Cell Rep. 2018 Oct 23;25(4):1018-1026.e4. doi: 10.1016/j.celrep.2018.09.074. Erratum in: Cell Rep. 2018 Nov 6;25(6):1680.

12.

Publisher Correction: Precision and accuracy of single-molecule FRET measurements-a multi-laboratory benchmark study.

Hellenkamp B, Schmid S, Doroshenko O, Opanasyuk O, Kühnemuth R, Adariani SR, Ambrose B, Aznauryan M, Barth A, Birkedal V, Bowen ME, Chen H, Cordes T, Eilert T, Fijen C, Gebhardt C, Götz M, Gouridis G, Gratton E, Ha T, Hao P, Hanke CA, Hartmann A, Hendrix J, Hildebrandt LL, Hirschfeld V, Hohlbein J, Hua B, Hübner CG, Kallis E, Kapanidis AN, Kim JY, Krainer G, Lamb DC, Lee NK, Lemke EA, Levesque B, Levitus M, McCann JJ, Naredi-Rainer N, Nettels D, Ngo T, Qiu R, Robb NC, Röcker C, Sanabria H, Schlierf M, Schröder T, Schuler B, Seidel H, Streit L, Thurn J, Tinnefeld P, Tyagi S, Vandenberk N, Vera AM, Weninger KR, Wünsch B, Yanez-Orozco IS, Michaelis J, Seidel CAM, Craggs TD, Hugel T.

Nat Methods. 2018 Nov;15(11):984. doi: 10.1038/s41592-018-0193-x.

PMID:
30327572
13.

Conformational dynamics of the ABC transporter McjD seen by single-molecule FRET.

Husada F, Bountra K, Tassis K, de Boer M, Romano M, Rebuffat S, Beis K, Cordes T.

EMBO J. 2018 Nov 2;37(21). pii: e100056. doi: 10.15252/embj.2018100056. Epub 2018 Sep 20.

14.

Precision and accuracy of single-molecule FRET measurements-a multi-laboratory benchmark study.

Hellenkamp B, Schmid S, Doroshenko O, Opanasyuk O, Kühnemuth R, Rezaei Adariani S, Ambrose B, Aznauryan M, Barth A, Birkedal V, Bowen ME, Chen H, Cordes T, Eilert T, Fijen C, Gebhardt C, Götz M, Gouridis G, Gratton E, Ha T, Hao P, Hanke CA, Hartmann A, Hendrix J, Hildebrandt LL, Hirschfeld V, Hohlbein J, Hua B, Hübner CG, Kallis E, Kapanidis AN, Kim JY, Krainer G, Lamb DC, Lee NK, Lemke EA, Levesque B, Levitus M, McCann JJ, Naredi-Rainer N, Nettels D, Ngo T, Qiu R, Robb NC, Röcker C, Sanabria H, Schlierf M, Schröder T, Schuler B, Seidel H, Streit L, Thurn J, Tinnefeld P, Tyagi S, Vandenberk N, Vera AM, Weninger KR, Wünsch B, Yanez-Orozco IS, Michaelis J, Seidel CAM, Craggs TD, Hugel T.

Nat Methods. 2018 Sep;15(9):669-676. doi: 10.1038/s41592-018-0085-0. Epub 2018 Aug 31. Erratum in: Nat Methods. 2018 Nov;15(11):984.

15.

Preserved cardiac function by vinculin enhances glucose oxidation and extends health- and life-span.

Sessions AO, Min P, Cordes T, Weickert BJ, Divakaruni AS, Murphy AN, Metallo CM, Engler AJ.

APL Bioeng. 2018 Sep;2(3). pii: 036101. doi: 10.1063/1.5019592. Epub 2018 Jul 17.

16.

Author Correction: A simple and versatile design concept for fluorophore derivatives with intramolecular photostabilization.

van der Velde JHM, Oelerich J, Huang J, Smit JH, Jazi AA, Galiani S, Kolmakov K, Gouridis G, Eggeling C, Herrmann A, Roelfes G, Cordes T.

Nat Commun. 2018 Jul 24;9:16232. doi: 10.1038/ncomms16232.

17.

Toward dynamic structural biology: Two decades of single-molecule Förster resonance energy transfer.

Lerner E, Cordes T, Ingargiola A, Alhadid Y, Chung S, Michalet X, Weiss S.

Science. 2018 Jan 19;359(6373). pii: eaan1133. doi: 10.1126/science.aan1133. Review.

18.

Corrigendum: A simple and versatile design concept for fluorophore derivatives with intramolecular photostabilization.

van der Velde JHM, Oelerich J, Huang J, Smit JH, Jazi AA, Galiani S, Kolmakov K, Gouridis G, Eggeling C, Herrmann A, Roelfes G, Cordes T.

Nat Commun. 2017 Nov 16;8:16173. doi: 10.1038/ncomms16173.

19.

ATF4-Induced Metabolic Reprograming Is a Synthetic Vulnerability of the p62-Deficient Tumor Stroma.

Linares JF, Cordes T, Duran A, Reina-Campos M, Valencia T, Ahn CS, Castilla EA, Moscat J, Metallo CM, Diaz-Meco MT.

Cell Metab. 2017 Dec 5;26(6):817-829.e6. doi: 10.1016/j.cmet.2017.09.001. Epub 2017 Oct 5.

20.

Time-Dependent Material Properties of Shotcrete: Experimental and Numerical Study.

Neuner M, Cordes T, Drexel M, Hofstetter G.

Materials (Basel). 2017 Sep 11;10(9). pii: E1067. doi: 10.3390/ma10091067.

21.

Corrigendum: A simple and versatile design concept for fluorophore derivatives with intramolecular photostabilization.

van der Velde JHM, Oelerich J, Huang J, Smit JH, Jazi AA, Galiani S, Kolmakov K, Gouridis G, Eggeling C, Herrmann A, Roelfes G, Cordes T.

Nat Commun. 2017 Aug 4;8:16144. doi: 10.1038/ncomms16144.

22.

Tracing insights into human metabolism using chemical engineering approaches.

Cordes T, Metallo CM.

Curr Opin Chem Eng. 2016 Nov;14:72-81. doi: 10.1016/j.coche.2016.08.019. Epub 2016 Sep 10.

23.

Caging and Photoactivation in Single-Molecule Förster Resonance Energy Transfer Experiments.

Jazi AA, Ploetz E, Arizki M, Dhandayuthapani B, Waclawska I, Krämer R, Ziegler C, Cordes T.

Biochemistry. 2017 Apr 11;56(14):2031-2041. doi: 10.1021/acs.biochem.6b00916. Epub 2017 Mar 31.

24.

Inhibition of the mitochondrial pyruvate carrier protects from excitotoxic neuronal death.

Divakaruni AS, Wallace M, Buren C, Martyniuk K, Andreyev AY, Li E, Fields JA, Cordes T, Reynolds IJ, Bloodgood BL, Raymond LA, Metallo CM, Murphy AN.

J Cell Biol. 2017 Apr 3;216(4):1091-1105. doi: 10.1083/jcb.201612067. Epub 2017 Mar 2.

25.

Single-molecule FRET reveals the pre-initiation and initiation conformations of influenza virus promoter RNA.

Robb NC, Te Velthuis AJ, Wieneke R, Tampé R, Cordes T, Fodor E, Kapanidis AN.

Nucleic Acids Res. 2016 Dec 1;44(21):10304-10315. Epub 2016 Sep 30.

26.
27.

Förster resonance energy transfer and protein-induced fluorescence enhancement as synergetic multi-scale molecular rulers.

Ploetz E, Lerner E, Husada F, Roelfs M, Chung S, Hohlbein J, Weiss S, Cordes T.

Sci Rep. 2016 Sep 19;6:33257. doi: 10.1038/srep33257.

28.

The Risk of Thromboembolic Complications in Fontan Patients with Atrial Flutter/Fibrillation Treated with Electrical Cardioversion.

Lin JH, Kean AC, Cordes TM.

Pediatr Cardiol. 2016 Oct;37(7):1351-60. doi: 10.1007/s00246-016-1441-4. Epub 2016 Jul 16.

29.

Immunoresponsive Gene 1 and Itaconate Inhibit Succinate Dehydrogenase to Modulate Intracellular Succinate Levels.

Cordes T, Wallace M, Michelucci A, Divakaruni AS, Sapcariu SC, Sousa C, Koseki H, Cabrales P, Murphy AN, Hiller K, Metallo CM.

J Biol Chem. 2016 Jul 1;291(27):14274-84. doi: 10.1074/jbc.M115.685792. Epub 2016 May 9.

30.

A Quantitative Theoretical Framework For Protein-Induced Fluorescence Enhancement-Förster-Type Resonance Energy Transfer (PIFE-FRET).

Lerner E, Ploetz E, Hohlbein J, Cordes T, Weiss S.

J Phys Chem B. 2016 Jul 7;120(26):6401-10. doi: 10.1021/acs.jpcb.6b03692. Epub 2016 May 26.

31.

Bridging the gap between non-targeted stable isotope labeling and metabolic flux analysis.

Weindl D, Cordes T, Battello N, Sapcariu SC, Dong X, Wegner A, Hiller K.

Cancer Metab. 2016 Apr 23;4:10. doi: 10.1186/s40170-016-0150-z. eCollection 2016.

32.

Light-Switchable Peptides with a Hemithioindigo Unit: Peptide Design, Photochromism, and Optical Spectroscopy.

Kitzig S, Thilemann M, Cordes T, Rück-Braun K.

Chemphyschem. 2016 May 4;17(9):1252-63. doi: 10.1002/cphc.201501050. Epub 2016 Feb 4. Review.

PMID:
26789782
33.

A simple and versatile design concept for fluorophore derivatives with intramolecular photostabilization.

van der Velde JH, Oelerich J, Huang J, Smit JH, Aminian Jazi A, Galiani S, Kolmakov K, Guoridis G, Eggeling C, Herrmann A, Roelfes G, Cordes T.

Nat Commun. 2016 Jan 11;7:10144. doi: 10.1038/ncomms10144. Erratum in: Nat Commun. 2017 Aug 04;8:16144. Nat Commun. 2017 Nov 16;8:16173. Nat Commun. 2018 Jul 24;9:16232.

34.

Plasmonics, Tracking and Manipulating, and Living Cells: general discussion.

Cordes T, Moerner W, Orrit M, Sekatskii S, Faez S, Borri P, Prabal Goswami H, Clark A, El-Khoury P, Mayr S, Mika J, Lyu G, Cross D, Balzarotti F, Langbein W, Sandoghdar V, Michaelis J, Chowdhury A, Meixner AJ, van Hulst N, Lounis B, Stefani F, Cichos F, Dahan M, Novotny L, Leake M, Yang H.

Faraday Discuss. 2015;184:451-73. doi: 10.1039/c5fd90093j. Epub 2015 Dec 1. No abstract available.

PMID:
26620824
35.

Superresolution techniques, biophysics with nanostructures, and fluorescence energy transfer: general discussion.

Cordes T, Moerner W, Orrit M, Needham LM, Sekatskii S, Faez S, Prabal Goswami H, Clark A, Meixner AJ, Piatkowski L, Sandoghdar V, Skinner GM, Balzarotti F, Langbein W, Novotny L, Birkedal V, Koberling F, Michaelis J, Williams P, Chowdhury A, van Hulst N, Dahan M, Peñaherrera A, Lounis B, Bohn PW, Shi X.

Faraday Discuss. 2015;184:143-62. doi: 10.1039/c5fd90094h. Epub 2015 Nov 30. No abstract available.

PMID:
26616426
36.

Quantum optics, molecular spectroscopy and low-temperature spectroscopy: general discussion.

Orrit M, Evans G, Cordes T, Kratochvilova I, Moerner W, Needham LM, Sekatskii S, Vainer Y, Faez S, Vedral V, Prabal Goswami H, Clark A, Meixner AJ, Piatkowski L, Birkedal V, Sandoghdar V, Skinner GM, Langbein W, Du J, Koberling F, Michaelis J, Shi F, Taylor R, Chowdhury A, Lounis B, van Hulst N, El-Khoury P, Novotny L, Wrachtrup J, Farrow T, Naumov A, Gladush M, Hanson R.

Faraday Discuss. 2015;184:275-303. doi: 10.1039/c5fd90088c. Epub 2015 Nov 30. No abstract available.

PMID:
26616312
37.

Watching conformational dynamics of ABC transporters with single-molecule tools.

Husada F, Gouridis G, Vietrov R, Schuurman-Wolters GK, Ploetz E, de Boer M, Poolman B, Cordes T.

Biochem Soc Trans. 2015 Oct;43(5):1041-7. doi: 10.1042/BST20150140. Review.

PMID:
26517920
38.

Intramolecular photostabilization via triplet-state quenching: design principles to make organic fluorophores "self-healing".

van der Velde JH, Uusitalo JJ, Ugen LJ, Warszawik EM, Herrmann A, Marrink SJ, Cordes T.

Faraday Discuss. 2015;184:221-35. doi: 10.1039/c5fd00114e. Epub 2015 Oct 9.

PMID:
26449795
39.

The Power of Two: Covalent Coupling of Photostabilizers for Fluorescence Applications.

van der Velde JH, Oelerich J, Huang J, Smit JH, Hiermaier M, Ploetz E, Herrmann A, Roelfes G, Cordes T.

J Phys Chem Lett. 2014 Nov 6;5(21):3792-8. doi: 10.1021/jz501874f. Epub 2014 Oct 17.

PMID:
26278749
40.

Itaconic Acid: The Surprising Role of an Industrial Compound as a Mammalian Antimicrobial Metabolite.

Cordes T, Michelucci A, Hiller K.

Annu Rev Nutr. 2015;35:451-73. doi: 10.1146/annurev-nutr-071714-034243. Epub 2015 May 13. Review.

PMID:
25974697
41.

Conformational dynamics in substrate-binding domains influences transport in the ABC importer GlnPQ.

Gouridis G, Schuurman-Wolters GK, Ploetz E, Husada F, Vietrov R, de Boer M, Cordes T, Poolman B.

Nat Struct Mol Biol. 2015 Jan;22(1):57-64. doi: 10.1038/nsmb.2929. Epub 2014 Dec 8.

PMID:
25486304
42.

Mechanism of intramolecular photostabilization in self-healing cyanine fluorophores.

van der Velde JH, Ploetz E, Hiermaier M, Oelerich J, de Vries JW, Roelfes G, Cordes T.

Chemphyschem. 2013 Dec 16;14(18):4084-93. doi: 10.1002/cphc.201300785. Epub 2013 Dec 2.

PMID:
24302532
43.
44.

Alternating-laser excitation: single-molecule FRET and beyond.

Hohlbein J, Craggs TD, Cordes T.

Chem Soc Rev. 2014 Feb 21;43(4):1156-71. doi: 10.1039/c3cs60233h. Review. Erratum in: Chem Soc Rev. 2014 Sep 7;43(17):6472.

PMID:
24037326
45.

Immune-responsive gene 1 protein links metabolism to immunity by catalyzing itaconic acid production.

Michelucci A, Cordes T, Ghelfi J, Pailot A, Reiling N, Goldmann O, Binz T, Wegner A, Tallam A, Rausell A, Buttini M, Linster CL, Medina E, Balling R, Hiller K.

Proc Natl Acad Sci U S A. 2013 May 7;110(19):7820-5. doi: 10.1073/pnas.1218599110. Epub 2013 Apr 22.

46.

The photochemical ring opening reaction of chromene as seen by transient absorption and fluorescence spectroscopy.

Herzog TT, Ryseck G, Ploetz E, Cordes T.

Photochem Photobiol Sci. 2013 Jul;12(7):1202-9. doi: 10.1039/c3pp50020a.

PMID:
23598991
47.

Initiation of ovarian stimulation independent of the menstrual cycle: a case-control study.

Buendgen NK, Schultze-Mosgau A, Cordes T, Diedrich K, Griesinger G.

Arch Gynecol Obstet. 2013 Oct;288(4):901-4. doi: 10.1007/s00404-013-2794-z. Epub 2013 Apr 3.

PMID:
23545834
48.

NTFD--a stand-alone application for the non-targeted detection of stable isotope-labeled compounds in GC/MS data.

Hiller K, Wegner A, Weindl D, Cordes T, Metallo CM, Kelleher JK, Stephanopoulos G.

Bioinformatics. 2013 May 1;29(9):1226-8. doi: 10.1093/bioinformatics/btt119. Epub 2013 Mar 11.

49.

The transcription bubble of the RNA polymerase-promoter open complex exhibits conformational heterogeneity and millisecond-scale dynamics: implications for transcription start-site selection.

Robb NC, Cordes T, Hwang LC, Gryte K, Duchi D, Craggs TD, Santoso Y, Weiss S, Ebright RH, Kapanidis AN.

J Mol Biol. 2013 Mar 11;425(5):875-85. doi: 10.1016/j.jmb.2012.12.015. Epub 2012 Dec 28.

50.

Development of a Scale-Down Model of hydrodynamic stress to study the performance of an industrial CHO cell line under simulated production scale bioreactor conditions.

Sieck JB, Cordes T, Budach WE, Rhiel MH, Suemeghy Z, Leist C, Villiger TK, Morbidelli M, Soos M.

J Biotechnol. 2013 Mar 10;164(1):41-9. doi: 10.1016/j.jbiotec.2012.11.012. Epub 2012 Dec 7.

PMID:
23228731

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