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Items: 30

1.

Multicellular behaviour enables cooperation in microbial cell aggregates.

Ebrahimi A, Schwartzman J, Cordero OX.

Philos Trans R Soc Lond B Biol Sci. 2019 Nov 25;374(1786):20190077. doi: 10.1098/rstb.2019.0077. Epub 2019 Oct 7.

PMID:
31587643
2.

Physics-based prediction of biopolymer degradation.

Abi-Akl R, Ledieu E, Enke TN, Cordero OX, Cohen T.

Soft Matter. 2019 May 22;15(20):4098-4108. doi: 10.1039/c9sm00262f.

PMID:
31086866
3.

Modular Assembly of Polysaccharide-Degrading Marine Microbial Communities.

Enke TN, Datta MS, Schwartzman J, Cermak N, Schmitz D, Barrere J, Pascual-García A, Cordero OX.

Curr Biol. 2019 May 6;29(9):1528-1535.e6. doi: 10.1016/j.cub.2019.03.047. Epub 2019 Apr 25.

4.

Strain-level diversity drives alternative community types in millimetre-scale granular biofilms.

Leventhal GE, Boix C, Kuechler U, Enke TN, Sliwerska E, Holliger C, Cordero OX.

Nat Microbiol. 2018 Nov;3(11):1295-1303. doi: 10.1038/s41564-018-0242-3. Epub 2018 Sep 24.

PMID:
30250246
5.

Microscale ecology regulates particulate organic matter turnover in model marine microbial communities.

Enke TN, Leventhal GE, Metzger M, Saavedra JT, Cordero OX.

Nat Commun. 2018 Jul 16;9(1):2743. doi: 10.1038/s41467-018-05159-8.

6.

Solving the structure-function puzzle.

Ma L, Cordero OX.

Nat Microbiol. 2018 Jul;3(7):750-751. doi: 10.1038/s41564-018-0186-7. No abstract available.

PMID:
29946162
7.

Endemic cyanophages and the puzzle of phage-bacteria coevolution.

Cordero OX.

Environ Microbiol. 2017 Feb;19(2):420-422. doi: 10.1111/1462-2920.13674. Epub 2017 Feb 16.

PMID:
28109041
8.

Bacterial evolution: Genomics of metabolic trade-offs.

Polz MF, Cordero OX.

Nat Microbiol. 2016 Oct 26;1(11):16181. doi: 10.1038/nmicrobiol.2016.181. No abstract available.

PMID:
27782136
9.

Challenges in microbial ecology: building predictive understanding of community function and dynamics.

Widder S, Allen RJ, Pfeiffer T, Curtis TP, Wiuf C, Sloan WT, Cordero OX, Brown SP, Momeni B, Shou W, Kettle H, Flint HJ, Haas AF, Laroche B, Kreft JU, Rainey PB, Freilich S, Schuster S, Milferstedt K, van der Meer JR, Groβkopf T, Huisman J, Free A, Picioreanu C, Quince C, Klapper I, Labarthe S, Smets BF, Wang H; Isaac Newton Institute Fellows, Soyer OS.

ISME J. 2016 Nov;10(11):2557-2568. doi: 10.1038/ismej.2016.45. Epub 2016 Mar 29. Review.

10.

A particularly useful system to study the ecology of microbes.

Cordero OX, Stocker R.

Environ Microbiol Rep. 2017 Feb;9(1):16-17. doi: 10.1111/1758-2229.12490. Epub 2016 Nov 28. No abstract available.

PMID:
27759951
11.

Microbial interactions lead to rapid micro-scale successions on model marine particles.

Datta MS, Sliwerska E, Gore J, Polz MF, Cordero OX.

Nat Commun. 2016 Jun 17;7:11965. doi: 10.1038/ncomms11965.

12.

Microbial interactions and community assembly at microscales.

Cordero OX, Datta MS.

Curr Opin Microbiol. 2016 Jun;31:227-234. doi: 10.1016/j.mib.2016.03.015. Epub 2016 May 25. Review.

13.

A genomic comparison of 13 symbiotic Vibrio fischeri isolates from the perspective of their host source and colonization behavior.

Bongrand C, Koch EJ, Moriano-Gutierrez S, Cordero OX, McFall-Ngai M, Polz MF, Ruby EG.

ISME J. 2016 Dec;10(12):2907-2917. doi: 10.1038/ismej.2016.69. Epub 2016 Apr 29.

14.

Eco-Evolutionary Dynamics of Episomes among Ecologically Cohesive Bacterial Populations.

Xue H, Cordero OX, Camas FM, Trimble W, Meyer F, Guglielmini J, Rocha EP, Polz MF.

MBio. 2015 May 5;6(3):e00552-15. doi: 10.1128/mBio.00552-15.

15.

Gene-specific selective sweeps in bacteria and archaea caused by negative frequency-dependent selection.

Takeuchi N, Cordero OX, Koonin EV, Kaneko K.

BMC Biol. 2015 Apr 16;13:20. doi: 10.1186/s12915-015-0131-7.

16.

Competition-dispersal tradeoff ecologically differentiates recently speciated marine bacterioplankton populations.

Yawata Y, Cordero OX, Menolascina F, Hehemann JH, Polz MF, Stocker R.

Proc Natl Acad Sci U S A. 2014 Apr 15;111(15):5622-7. doi: 10.1073/pnas.1318943111. Epub 2014 Apr 1.

17.

Explaining microbial genomic diversity in light of evolutionary ecology.

Cordero OX, Polz MF.

Nat Rev Microbiol. 2014 Apr;12(4):263-73. doi: 10.1038/nrmicro3218. Epub 2014 Mar 3. Review.

PMID:
24590245
18.

Distinct dissolved organic matter sources induce rapid transcriptional responses in coexisting populations of Prochlorococcus, Pelagibacter and the OM60 clade.

Sharma AK, Becker JW, Ottesen EA, Bryant JA, Duhamel S, Karl DM, Cordero OX, Repeta DJ, DeLong EF.

Environ Microbiol. 2014 Sep;16(9):2815-30. doi: 10.1111/1462-2920.12254. Epub 2013 Sep 30.

PMID:
24118765
19.

Public good dynamics drive evolution of iron acquisition strategies in natural bacterioplankton populations.

Cordero OX, Ventouras LA, DeLong EF, Polz MF.

Proc Natl Acad Sci U S A. 2012 Dec 4;109(49):20059-64. doi: 10.1073/pnas.1213344109. Epub 2012 Nov 19.

20.

Ecological populations of bacteria act as socially cohesive units of antibiotic production and resistance.

Cordero OX, Wildschutte H, Kirkup B, Proehl S, Ngo L, Hussain F, Le Roux F, Mincer T, Polz MF.

Science. 2012 Sep 7;337(6099):1228-31. doi: 10.1126/science.1219385.

21.

Population genomics of early events in the ecological differentiation of bacteria.

Shapiro BJ, Friedman J, Cordero OX, Preheim SP, Timberlake SC, Szabó G, Polz MF, Alm EJ.

Science. 2012 Apr 6;336(6077):48-51. doi: 10.1126/science.1218198.

22.

Ecology drives a global network of gene exchange connecting the human microbiome.

Smillie CS, Smith MB, Friedman J, Cordero OX, David LA, Alm EJ.

Nature. 2011 Oct 30;480(7376):241-4. doi: 10.1038/nature10571.

PMID:
22037308
23.

Local mobile gene pools rapidly cross species boundaries to create endemicity within global Vibrio cholerae populations.

Boucher Y, Cordero OX, Takemura A, Hunt DE, Schliep K, Bapteste E, Lopez P, Tarr CL, Polz MF.

MBio. 2011 Apr 12;2(2). pii: e00335-10. doi: 10.1128/mBio.00335-10. Print 2011.

24.

DNA phosphorothioation is widespread and quantized in bacterial genomes.

Wang L, Chen S, Vergin KL, Giovannoni SJ, Chan SW, DeMott MS, Taghizadeh K, Cordero OX, Cutler M, Timberlake S, Alm EJ, Polz MF, Pinhassi J, Deng Z, Dedon PC.

Proc Natl Acad Sci U S A. 2011 Feb 15;108(7):2963-8. doi: 10.1073/pnas.1017261108. Epub 2011 Feb 1.

25.

The impact of long-distance horizontal gene transfer on prokaryotic genome size.

Cordero OX, Hogeweg P.

Proc Natl Acad Sci U S A. 2009 Dec 22;106(51):21748-53. doi: 10.1073/pnas.0907584106. Epub 2009 Dec 9.

26.

The consequences of base pair composition biases for regulatory network organization in prokaryotes.

Cordero OX, Hogeweg P.

Mol Biol Evol. 2009 Oct;26(10):2171-3. doi: 10.1093/molbev/msp132. Epub 2009 Jun 30.

PMID:
19567917
27.

Regulome size in Prokaryotes: universality and lineage-specific variations.

Cordero OX, Hogeweg P.

Trends Genet. 2009 Jul;25(7):285-6. doi: 10.1016/j.tig.2009.05.001. Epub 2009 Jun 18. No abstract available.

PMID:
19540614
28.

Coevolution of gene families in prokaryotes.

Cordero OX, Snel B, Hogeweg P.

Genome Res. 2008 Mar;18(3):462-8. doi: 10.1101/gr.6815508. Epub 2008 Jan 29.

29.

Large changes in regulome size herald the main prokaryotic lineages.

Cordero OX, Hogeweg P.

Trends Genet. 2007 Oct;23(10):488-93. Epub 2007 Aug 10.

PMID:
17692992
30.

Feed-forward loop circuits as a side effect of genome evolution.

Cordero OX, Hogeweg P.

Mol Biol Evol. 2006 Oct;23(10):1931-6. Epub 2006 Jul 12.

PMID:
16840361

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