Format
Sort by
Items per page

Send to

Choose Destination

Search results

Items: 1 to 50 of 113

1.

Reproducible bioinformatics project: a community for reproducible bioinformatics analysis pipelines.

Kulkarni N, Alessandrì L, Panero R, Arigoni M, Olivero M, Ferrero G, Cordero F, Beccuti M, Calogero RA.

BMC Bioinformatics. 2018 Oct 15;19(Suppl 10):349. doi: 10.1186/s12859-018-2296-x.

2.

Endoscopic Balloon Dilation for Treatment of Congenital Antral Web.

Peck J, Khalaf R, Marth R, Phen C, Sosa R, Cordero FB, Wilsey M.

Pediatr Gastroenterol Hepatol Nutr. 2018 Oct;21(4):351-354. doi: 10.5223/pghn.2018.21.4.351. Epub 2018 Oct 10.

3.

MMP23B expression and protein levels in blood and urine are associated with bladder cancer.

Allione A, Pardini B, Viberti C, Giribaldi G, Turini S, Di Gaetano C, Guarrera S, Cordero F, Oderda M, Allasia M, Gontero P, Sacerdote C, Vineis P, Matullo G.

Carcinogenesis. 2018 Oct 8;39(10):1254-1263. doi: 10.1093/carcin/bgy098.

PMID:
30052775
4.

Competition between Polar and Antiferrodistortive Modes and Correlated Dynamics of the Methylammonium Molecules in MAPbI3 from Anelastic and Dielectric Measurements.

Cordero F, Craciun F, Trequattrini F, Imperatori P, Paoletti AM, Pennesi G.

J Phys Chem Lett. 2018 Aug 2;9(15):4401-4406. doi: 10.1021/acs.jpclett.8b01761. Epub 2018 Jul 23.

PMID:
30027742
5.

Combined use of Mössbauer spectroscopy, XPS, HRTEM, dielectric and anelastic spectroscopy for estimating incipient phase separation in lead titanate-based multiferroics.

Craciun F, Cordero F, Vasile BS, Fruth V, Zaharescu M, Atkinson I, Trusca R, Diamandescu L, Tanase LC, Galizia P, Cernea M, Galassi C.

Phys Chem Chem Phys. 2018 May 30;20(21):14652-14663. doi: 10.1039/c8cp01456f.

PMID:
29770415
6.

microRNA profiles in urine by next-generation sequencing can stratify bladder cancer subtypes.

Pardini B, Cordero F, Naccarati A, Viberti C, Birolo G, Oderda M, Di Gaetano C, Arigoni M, Martina F, Calogero RA, Sacerdote C, Gontero P, Vineis P, Matullo G.

Oncotarget. 2018 Apr 17;9(29):20658-20669. doi: 10.18632/oncotarget.25057. eCollection 2018 Apr 17.

7.

A probabilistic view on the deterministic mutation-selection equation: dynamics, equilibria, and ancestry via individual lines of descent.

Baake E, Cordero F, Hummel S.

J Math Biol. 2018 Sep;77(3):795-820. doi: 10.1007/s00285-018-1228-8. Epub 2018 Apr 19.

PMID:
29675600
8.

Luminal breast cancer-specific circular RNAs uncovered by a novel tool for data analysis.

Coscujuela Tarrero L, Ferrero G, Miano V, De Intinis C, Ricci L, Arigoni M, Riccardo F, Annaratone L, Castellano I, Calogero RA, Beccuti M, Cordero F, De Bortoli M.

Oncotarget. 2018 Feb 19;9(18):14580-14596. doi: 10.18632/oncotarget.24522. eCollection 2018 Mar 6.

9.

Small non-coding RNA profiling in human biofluids and surrogate tissues from healthy individuals: description of the diverse and most represented species.

Ferrero G, Cordero F, Tarallo S, Arigoni M, Riccardo F, Gallo G, Ronco G, Allasia M, Kulkarni N, Matullo G, Vineis P, Calogero RA, Pardini B, Naccarati A.

Oncotarget. 2017 Dec 14;9(3):3097-3111. doi: 10.18632/oncotarget.23203. eCollection 2018 Jan 9.

10.

HashClone: a new tool to quantify the minimal residual disease in B-cell lymphoma from deep sequencing data.

Beccuti M, Genuardi E, Romano G, Monitillo L, Barbero D, Boccadoro M, Ladetto M, Calogero R, Ferrero S, Cordero F.

BMC Bioinformatics. 2017 Nov 23;18(1):516. doi: 10.1186/s12859-017-1923-2.

11.

SeqBox: RNAseq/ChIPseq reproducible analysis on a consumer game computer.

Beccuti M, Cordero F, Arigoni M, Panero R, Amparore EG, Donatelli S, Calogero RA.

Bioinformatics. 2018 Mar 1;34(5):871-872. doi: 10.1093/bioinformatics/btx674.

12.

Two-Loop Four-Gluon Amplitudes from Numerical Unitarity.

Abreu S, Cordero FF, Ita H, Jaquier M, Page B, Zeng M.

Phys Rev Lett. 2017 Oct 6;119(14):142001. doi: 10.1103/PhysRevLett.119.142001. Epub 2017 Oct 5.

PMID:
29053299
13.

Dissecting the genomic activity of a transcriptional regulator by the integrative analysis of omics data.

Ferrero G, Miano V, Beccuti M, Balbo G, De Bortoli M, Cordero F.

Sci Rep. 2017 Aug 17;7(1):8564. doi: 10.1038/s41598-017-08754-9.

14.

Peculiar Genes Selection: A new features selection method to improve classification performances in imbalanced data sets.

Martina F, Beccuti M, Balbo G, Cordero F.

PLoS One. 2017 Aug 14;12(8):e0177475. doi: 10.1371/journal.pone.0177475. eCollection 2017.

15.

[Clinical features of patients with Basedow Graves disease seen at a university hospital].

Lanas A, Díaz P, Eugenin D, González F, Cid P, Cordero F, Araya V, Liberman C, Barberan M, Gac P, Saldías N, Pineda P.

Rev Med Chil. 2017 Apr;145(4):436-440. doi: 10.4067/S0034-98872017000400003. Spanish.

16.

Histone H3.3K27M Represses p16 to Accelerate Gliomagenesis in a Murine Model of DIPG.

Cordero FJ, Huang Z, Grenier C, He X, Hu G, McLendon RE, Murphy SK, Hashizume R, Becher OJ.

Mol Cancer Res. 2017 Sep;15(9):1243-1254. doi: 10.1158/1541-7786.MCR-16-0389. Epub 2017 May 18.

17.

Erratum to: 'NETTAB 2014: From high-throughput structural bioinformatics to integrative systems biology'.

Romano P, Cordero F.

BMC Bioinformatics. 2016 Jul 29;17(1):293. No abstract available.

18.

Biologic Data of Cynomolgus Monkeys Maintained under Laboratory Conditions.

Rosso MC, Badino P, Ferrero G, Costa R, Cordero F, Steidler S.

PLoS One. 2016 Jun 9;11(6):e0157003. doi: 10.1371/journal.pone.0157003. eCollection 2016.

19.

A picture is worth a thousand words: maps of HIV indicators to inform research, programs, and policy from NA-ACCORD and CCASAnet clinical cohorts.

Althoff KN, Rebeiro PF, Hanna DB, Padgett D, Horberg MA, Grinsztejn B, Abraham AG, Hogg R, Gill MJ, Wolff MJ, Mayor A, Rachlis A, Williams C, Sterling TR, Kitahata MM, Buchacz K, Thorne JE, Cesar C, Cordero FM, Rourke SB, Sierra-Madero J, Pape JW, Cahn P, McGowan C; North American Aids Cohort Collaboration on Research and Design (NA-ACCORD) and Caribbean, Central and South America Network for Hiv Epidemiology (CCASAnet).

J Int AIDS Soc. 2016 Apr 4;19(1):20707. doi: 10.7448/IAS.19.1.20707. eCollection 2016.

20.

NETTAB 2014: From high-throughput structural bioinformatics to integrative systems biology.

Romano P, Cordero F.

BMC Bioinformatics. 2016 Mar 2;17 Suppl 4:62. doi: 10.1186/s12859-016-0907-y. Erratum in: BMC Bioinformatics. 2016;17(1):293.

21.

A Stereoselective Synthesis of Lentiginosine.

Cordero FM, Vurchio C, Brandi A.

J Org Chem. 2016 Feb 19;81(4):1661-4. doi: 10.1021/acs.joc.5b02804. Epub 2016 Feb 3.

PMID:
26800332
22.

Implementation and Outcomes of a Community-Based Educational Program for Colorectal Cancer Prevention in Hispanics.

Cruz-Correa M, Cordero F, Betancourt JP, Diaz-Algorri Y, Lopez SM, Rivera M, Mosquera R, Carlo-Chevere V, Rodriguez-Quilichini S.

J Fam Med Dis Prev. 2016;2(3). pii: 42. doi: 10.23937/2469-5793/1510042. Epub 2016 Aug 25.

23.

Luminal long non-coding RNAs regulated by estrogen receptor alpha in a ligand-independent manner show functional roles in breast cancer.

Miano V, Ferrero G, Reineri S, Caizzi L, Annaratone L, Ricci L, Cutrupi S, Castellano I, Cordero F, De Bortoli M.

Oncotarget. 2016 Jan 19;7(3):3201-16. doi: 10.18632/oncotarget.6420.

24.

Elastic Properties and Enhanced Piezoelectric Response at Morphotropic Phase Boundaries.

Cordero F.

Materials (Basel). 2015 Dec 2;8(12):8195-8245. doi: 10.3390/ma8125452. Review.

25.

A computational analysis of S-(2-succino)cysteine sites in proteins.

Miglio G, Sabatino AD, Veglia E, Giraudo MT, Beccuti M, Cordero F.

Biochim Biophys Acta. 2016 Feb;1864(2):211-8. doi: 10.1016/j.bbapap.2015.11.003. Epub 2015 Nov 14.

26.

Tumor location, but not H3.3K27M, significantly influences the blood-brain-barrier permeability in a genetic mouse model of pediatric high-grade glioma.

Subashi E, Cordero FJ, Halvorson KG, Qi Y, Nouls JC, Becher OJ, Johnson GA.

J Neurooncol. 2016 Jan;126(2):243-51. doi: 10.1007/s11060-015-1969-9. Epub 2015 Oct 28.

27.

Pre-Clinical Models of Diffuse Intrinsic Pontine Glioma.

Misuraca KL, Cordero FJ, Becher OJ.

Front Oncol. 2015 Jul 24;5:172. doi: 10.3389/fonc.2015.00172. eCollection 2015. Review.

28.

Sequencing of 15 622 gene-bearing BACs clarifies the gene-dense regions of the barley genome.

Muñoz-Amatriaín M, Lonardi S, Luo M, Madishetty K, Svensson JT, Moscou MJ, Wanamaker S, Jiang T, Kleinhofs A, Muehlbauer GJ, Wise RP, Stein N, Ma Y, Rodriguez E, Kudrna D, Bhat PR, Chao S, Condamine P, Heinen S, Resnik J, Wing R, Witt HN, Alpert M, Beccuti M, Bozdag S, Cordero F, Mirebrahim H, Ounit R, Wu Y, You F, Zheng J, Simková H, Dolezel J, Grimwood J, Schmutz J, Duma D, Altschmied L, Blake T, Bregitzer P, Cooper L, Dilbirligi M, Falk A, Feiz L, Graner A, Gustafson P, Hayes PM, Lemaux P, Mammadov J, Close TJ.

Plant J. 2015 Oct;84(1):216-27. doi: 10.1111/tpj.12959. Epub 2015 Sep 21.

29.

Differentially methylated microRNAs in prediagnostic samples of subjects who developed breast cancer in the European Prospective Investigation into Nutrition and Cancer (EPIC-Italy) cohort.

Cordero F, Ferrero G, Polidoro S, Fiorito G, Campanella G, Sacerdote C, Mattiello A, Masala G, Agnoli C, Frasca G, Panico S, Palli D, Krogh V, Tumino R, Vineis P, Naccarati A.

Carcinogenesis. 2015 Oct;36(10):1144-53. doi: 10.1093/carcin/bgv102. Epub 2015 Jul 13.

30.

Alternative splicing detection workflow needs a careful combination of sample prep and bioinformatics analysis.

Carrara M, Lum J, Cordero F, Beccuti M, Poidinger M, Donatelli S, Calogero RA, Zolezzi F.

BMC Bioinformatics. 2015;16 Suppl 9:S2. doi: 10.1186/1471-2105-16-S9-S2. Epub 2015 Jun 1.

31.

A versatile mathematical work-flow to explore how Cancer Stem Cell fate influences tumor progression.

Fornari C, Balbo G, Halawani SM, Ba-Rukab O, Ahmad AR, Calogero RA, Cordero F, Beccuti M.

BMC Syst Biol. 2015;9 Suppl 3:S1. doi: 10.1186/1752-0509-9-S3-S1. Epub 2015 Jun 1.

32.

The molecular landscape of colorectal cancer cell lines unveils clinically actionable kinase targets.

Medico E, Russo M, Picco G, Cancelliere C, Valtorta E, Corti G, Buscarino M, Isella C, Lamba S, Martinoglio B, Veronese S, Siena S, Sartore-Bianchi A, Beccuti M, Mottolese M, Linnebacher M, Cordero F, Di Nicolantonio F, Bardelli A.

Nat Commun. 2015 Apr 30;6:7002. doi: 10.1038/ncomms8002.

33.

A high-throughput in vitro drug screen in a genetically engineered mouse model of diffuse intrinsic pontine glioma identifies BMS-754807 as a promising therapeutic agent.

Halvorson KG, Barton KL, Schroeder K, Misuraca KL, Hoeman C, Chung A, Crabtree DM, Cordero FJ, Singh R, Spasojevic I, Berlow N, Pal R, Becher OJ.

PLoS One. 2015 Mar 6;10(3):e0118926. doi: 10.1371/journal.pone.0118926. eCollection 2015.

34.

Chimera: a Bioconductor package for secondary analysis of fusion products.

Beccuti M, Carrara M, Cordero F, Lazzarato F, Donatelli S, Nadalin F, Policriti A, Calogero RA.

Bioinformatics. 2014 Dec 15;30(24):3556-7. doi: 10.1093/bioinformatics/btu662. Epub 2014 Oct 6.

35.

A mathematical-biological joint effort to investigate the tumor-initiating ability of Cancer Stem Cells.

Fornari C, Beccuti M, Lanzardo S, Conti L, Balbo G, Cavallo F, Calogero RA, Cordero F.

PLoS One. 2014 Sep 3;9(9):e106193. doi: 10.1371/journal.pone.0106193. eCollection 2014.

36.

Progress in the synthesis and transformations of alkylidenecyclopropanes and alkylidenecyclobutanes.

Brandi A, Cicchi S, Cordero FM, Goti A.

Chem Rev. 2014 Aug 13;114(15):7317-420. doi: 10.1021/cr400686j. Epub 2014 Jun 13. No abstract available.

PMID:
24927495
37.

Recent syntheses and biological activity of lentiginosine and its analogues.

Cordero FM, Giomi D, Brandi A.

Curr Top Med Chem. 2014;14(10):1294-307. Review.

PMID:
24758428
38.

Genomic analysis of diffuse intrinsic pontine gliomas identifies three molecular subgroups and recurrent activating ACVR1 mutations.

Buczkowicz P, Hoeman C, Rakopoulos P, Pajovic S, Letourneau L, Dzamba M, Morrison A, Lewis P, Bouffet E, Bartels U, Zuccaro J, Agnihotri S, Ryall S, Barszczyk M, Chornenkyy Y, Bourgey M, Bourque G, Montpetit A, Cordero F, Castelo-Branco P, Mangerel J, Tabori U, Ho KC, Huang A, Taylor KR, Mackay A, Bendel AE, Nazarian J, Fangusaro JR, Karajannis MA, Zagzag D, Foreman NK, Donson A, Hegert JV, Smith A, Chan J, Lafay-Cousin L, Dunn S, Hukin J, Dunham C, Scheinemann K, Michaud J, Zelcer S, Ramsay D, Cain J, Brennan C, Souweidane MM, Jones C, Allis CD, Brudno M, Becher O, Hawkins C.

Nat Genet. 2014 May;46(5):451-6. doi: 10.1038/ng.2936. Epub 2014 Apr 6.

39.

Genome-wide activity of unliganded estrogen receptor-α in breast cancer cells.

Caizzi L, Ferrero G, Cutrupi S, Cordero F, Ballaré C, Miano V, Reineri S, Ricci L, Friard O, Testori A, Corà D, Caselle M, Di Croce L, De Bortoli M.

Proc Natl Acad Sci U S A. 2014 Apr 1;111(13):4892-7. doi: 10.1073/pnas.1315445111. Epub 2014 Mar 17.

40.

Post-treatment recovery of suboptimal DNA repair capacity and gene expression levels in colorectal cancer patients.

Slyskova J, Cordero F, Pardini B, Korenkova V, Vymetalkova V, Bielik L, Vodickova L, Pitule P, Liska V, Matejka VM, Levy M, Buchler T, Kubista M, Naccarati A, Vodicka P.

Mol Carcinog. 2015 Sep;54(9):769-78. doi: 10.1002/mc.22141. Epub 2014 Mar 3.

41.

Genomic lens on neuroglobin transcription.

Cutrupi S, Ferrero G, Reineri S, Cordero F, De Bortoli M.

IUBMB Life. 2014 Jan;66(1):46-51. doi: 10.1002/iub.1235. Epub 2014 Jan 6.

42.

PD-0332991, a CDK4/6 inhibitor, significantly prolongs survival in a genetically engineered mouse model of brainstem glioma.

Barton KL, Misuraca K, Cordero F, Dobrikova E, Min HD, Gromeier M, Kirsch DG, Becher OJ.

PLoS One. 2013 Oct 2;8(10):e77639. doi: 10.1371/journal.pone.0077639. eCollection 2013.

43.

State of art fusion-finder algorithms are suitable to detect transcription-induced chimeras in normal tissues?

Carrara M, Beccuti M, Cavallo F, Donatelli S, Lazzarato F, Cordero F, Calogero RA.

BMC Bioinformatics. 2013;14 Suppl 7:S2. doi: 10.1186/1471-2105-14-S7-S2. Epub 2013 Apr 22.

44.

Multi-level model for the investigation of oncoantigen-driven vaccination effect.

Cordero F, Beccuti M, Fornari C, Lanzardo S, Conti L, Cavallo F, Balbo G, Calogero R.

BMC Bioinformatics. 2013;14 Suppl 6:S11. doi: 10.1186/1471-2105-14-S6-S11. Epub 2013 Apr 17.

45.

Combinatorial pooling enables selective sequencing of the barley gene space.

Lonardi S, Duma D, Alpert M, Cordero F, Beccuti M, Bhat PR, Wu Y, Ciardo G, Alsaihati B, Ma Y, Wanamaker S, Resnik J, Bozdag S, Luo MC, Close TJ.

PLoS Comput Biol. 2013 Apr;9(4):e1003010. doi: 10.1371/journal.pcbi.1003010. Epub 2013 Apr 4.

46.

State-of-the-art fusion-finder algorithms sensitivity and specificity.

Carrara M, Beccuti M, Lazzarato F, Cavallo F, Cordero F, Donatelli S, Calogero RA.

Biomed Res Int. 2013;2013:340620. doi: 10.1155/2013/340620. Epub 2013 Feb 17.

47.

Inhibition of PRC2 activity by a gain-of-function H3 mutation found in pediatric glioblastoma.

Lewis PW, Müller MM, Koletsky MS, Cordero F, Lin S, Banaszynski LA, Garcia BA, Muir TW, Becher OJ, Allis CD.

Science. 2013 May 17;340(6134):857-61. doi: 10.1126/science.1232245. Epub 2013 Mar 28.

48.

Synthesis of 4-hydroxy-β3-homoprolines and their insertion in α/β/α-tripeptides.

Cordero FM, Vurchio C, Lumini M, Brandi A.

Amino Acids. 2013 Feb;44(2):769-80. doi: 10.1007/s00726-012-1401-0. Epub 2012 Sep 28.

PMID:
23053017
49.

Natural iminosugar (+)-lentiginosine inhibits ATPase and chaperone activity of hsp90.

Dal Piaz F, Vassallo A, Chini MG, Cordero FM, Cardona F, Pisano C, Bifulco G, De Tommasi N, Brandi A.

PLoS One. 2012;7(8):e43316. doi: 10.1371/journal.pone.0043316. Epub 2012 Aug 20.

50.

D(-)lentiginosine-induced apoptosis involves the intrinsic pathway and is p53-independent.

Minutolo A, Grelli S, Marino-Merlo F, Cordero FM, Brandi A, Macchi B, Mastino A.

Cell Death Dis. 2012 Jul 26;3:e358. doi: 10.1038/cddis.2012.97.

Supplemental Content

Loading ...
Support Center