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Dataset for sequencing and de novo assembly of the European endangered white-clawed crayfish (Austropotamobius pallipes) abdominal muscle transcriptome.

Grandjean F, Gan HM, Moumen B, Giraud I, Hatira S, Cordaux R, Austin CM.

Data Brief. 2020 Jan 27;29:105166. doi: 10.1016/j.dib.2020.105166. eCollection 2020 Apr.


Wide spectrum and high frequency of genomic structural variation, including transposable elements, in large double-stranded DNA viruses.

Loiseau V, Herniou EA, Moreau Y, Lévêque N, Meignin C, Daeffler L, Federici B, Cordaux R, Gilbert C.

Virus Evol. 2020 Jan 27;6(1):vez060. doi: 10.1093/ve/vez060. eCollection 2020 Jan.


Shedding Light on the Antimicrobial Peptide Arsenal of Terrestrial Isopods: Focus on Armadillidins, a New Crustacean AMP Family.

Becking T, Delaunay C, Cordaux R, Berjeaud JM, Braquart-Varnier C, Verdon J.

Genes (Basel). 2020 Jan 14;11(1). pii: E93. doi: 10.3390/genes11010093.


The 2019 FASEB Science Research Conference on The Mobile DNA Conference: 25 Years of Discussion and Research, June 23-28, Palm Springs, California, USA.

Ray DA, Paulat N, An W, Boissinot S, Cordaux R, Kaul T, Freeman B, Belancio V.

FASEB J. 2019 Nov;33(11):11625-11628. doi: 10.1096/fj.201902390. No abstract available.


Sex chromosomes control vertical transmission of feminizing Wolbachia symbionts in an isopod.

Becking T, Chebbi MA, Giraud I, Moumen B, Laverré T, Caubet Y, Peccoud J, Gilbert C, Cordaux R.

PLoS Biol. 2019 Oct 10;17(10):e3000438. doi: 10.1371/journal.pbio.3000438. eCollection 2019 Oct.


The Genome of Armadillidium vulgare (Crustacea, Isopoda) Provides Insights into Sex Chromosome Evolution in the Context of Cytoplasmic Sex Determination.

Chebbi MA, Becking T, Moumen B, Giraud I, Gilbert C, Peccoud J, Cordaux R.

Mol Biol Evol. 2019 Apr 1;36(4):727-741. doi: 10.1093/molbev/msz010.


Investigating the Molecular Genetic Basis of Cytoplasmic Sex Determination Caused by Wolbachia Endosymbionts in Terrestrial Isopods.

Badawi M, Moumen B, Giraud I, Grève P, Cordaux R.

Genes (Basel). 2018 Jun 8;9(6). pii: E290. doi: 10.3390/genes9060290.


Author Correction: Diversity and evolution of sex determination systems in terrestrial isopods.

Becking T, Giraud I, Raimond M, Moumen B, Chandler C, Cordaux R, Gilbert C.

Sci Rep. 2018 Apr 27;8(1):6948. doi: 10.1038/s41598-018-25423-7.


Genomics analysis of Aphanomyces spp. identifies a new class of oomycete effector associated with host adaptation.

Gaulin E, Pel MJC, Camborde L, San-Clemente H, Courbier S, Dupouy MA, Lengellé J, Veyssiere M, Le Ru A, Grandjean F, Cordaux R, Moumen B, Gilbert C, Cano LM, Aury JM, Guy J, Wincker P, Bouchez O, Klopp C, Dumas B.

BMC Biol. 2018 Apr 18;16(1):43. doi: 10.1186/s12915-018-0508-5.


Analyzing Horizontal Transfer of Transposable Elements on a Large Scale: Challenges and Prospects.

Peccoud J, Cordaux R, Gilbert C.

Bioessays. 2018 Feb;40(2). doi: 10.1002/bies.201700177. Epub 2017 Dec 28. Review.


Pan-arthropod analysis reveals somatic piRNAs as an ancestral defence against transposable elements.

Lewis SH, Quarles KA, Yang Y, Tanguy M, Frézal L, Smith SA, Sharma PP, Cordaux R, Gilbert C, Giraud I, Collins DH, Zamore PD, Miska EA, Sarkies P, Jiggins FM.

Nat Ecol Evol. 2018 Jan;2(1):174-181. doi: 10.1038/s41559-017-0403-4. Epub 2017 Dec 4.


Untangling Heteroplasmy, Structure, and Evolution of an Atypical Mitochondrial Genome by PacBio Sequencing.

Peccoud J, Chebbi MA, Cormier A, Moumen B, Gilbert C, Marcadé I, Chandler C, Cordaux R.

Genetics. 2017 Sep;207(1):269-280. doi: 10.1534/genetics.117.203380. Epub 2017 Jul 5.


Viruses as vectors of horizontal transfer of genetic material in eukaryotes.

Gilbert C, Cordaux R.

Curr Opin Virol. 2017 Aug;25:16-22. doi: 10.1016/j.coviro.2017.06.005. Epub 2017 Jun 30. Review.


Iridovirus IIV31 : un pathogène d'isopodes terrestres remarquable.

Loiseau V, Giraud I, Federici B, Bigot Y, Cordaux R, Gilbert C.

Virologie (Montrouge). 2017 Jun 1;21(3):147-149. doi: 10.1684/vir.2017.0694. No abstract available.


Diversity and evolution of sex determination systems in terrestrial isopods.

Becking T, Giraud I, Raimond M, Moumen B, Chandler C, Cordaux R, Gilbert C.

Sci Rep. 2017 Apr 24;7(1):1084. doi: 10.1038/s41598-017-01195-4. Erratum in: Sci Rep. 2018 Apr 27;8(1):6948.


Massive horizontal transfer of transposable elements in insects.

Peccoud J, Loiseau V, Cordaux R, Gilbert C.

Proc Natl Acad Sci U S A. 2017 May 2;114(18):4721-4726. doi: 10.1073/pnas.1621178114. Epub 2017 Apr 17.


Birth of a W sex chromosome by horizontal transfer of Wolbachia bacterial symbiont genome.

Leclercq S, Thézé J, Chebbi MA, Giraud I, Moumen B, Ernenwein L, Grève P, Gilbert C, Cordaux R.

Proc Natl Acad Sci U S A. 2016 Dec 27;113(52):15036-15041. doi: 10.1073/pnas.1608979113. Epub 2016 Dec 6.


Continuous Influx of Genetic Material from Host to Virus Populations.

Gilbert C, Peccoud J, Chateigner A, Moumen B, Cordaux R, Herniou EA.

PLoS Genet. 2016 Feb 1;12(2):e1005838. doi: 10.1371/journal.pgen.1005838. eCollection 2016 Feb.


Supergroup C Wolbachia, mutualist symbionts of filarial nematodes, have a distinct genome structure.

Comandatore F, Cordaux R, Bandi C, Blaxter M, Darby A, Makepeace BL, Montagna M, Sassera D.

Open Biol. 2015 Dec;5(12):150099. doi: 10.1098/rsob.150099.


Comparative paleovirological analysis of crustaceans identifies multiple widespread viral groups.

Metegnier G, Becking T, Chebbi MA, Giraud I, Moumen B, Schaack S, Cordaux R, Gilbert C.

Mob DNA. 2015 Sep 16;6:16. doi: 10.1186/s13100-015-0047-3. eCollection 2015.


A call for benchmarking transposable element annotation methods.

Hoen DR, Hickey G, Bourque G, Casacuberta J, Cordaux R, Feschotte C, Fiston-Lavier AS, Hua-Van A, Hubley R, Kapusta A, Lerat E, Maumus F, Pollock DD, Quesneville H, Smit A, Wheeler TJ, Bureau TE, Blanchette M.

Mob DNA. 2015 Aug 4;6:13. doi: 10.1186/s13100-015-0044-6. eCollection 2015.


Feminization of the Isopod Cylisticus convexus after Transinfection of the wVulC Wolbachia Strain of Armadillidium vulgare.

Badawi M, Grève P, Cordaux R.

PLoS One. 2015 Jun 5;10(6):e0128660. doi: 10.1371/journal.pone.0128660. eCollection 2015.


Multiple Conserved Heteroplasmic Sites in tRNA Genes in the Mitochondrial Genomes of Terrestrial Isopods (Oniscidea).

Chandler CH, Badawi M, Moumen B, Grève P, Cordaux R.

G3 (Bethesda). 2015 Apr 24;5(7):1317-22. doi: 10.1534/g3.115.018283.


Genomic context drives transcription of insertion sequences in the bacterial endosymbiont Wolbachia wVulC.

Cerveau N, Gilbert C, Liu C, Garrett RA, Grève P, Bouchon D, Cordaux R.

Gene. 2015 Jun 10;564(1):81-6. doi: 10.1016/j.gene.2015.03.044. Epub 2015 Mar 23.


Signs of neutralization in a redundant gene involved in homologous recombination in Wolbachia endosymbionts.

Badawi M, Giraud I, Vavre F, Grève P, Cordaux R.

Genome Biol Evol. 2014 Sep 17;6(10):2654-64. doi: 10.1093/gbe/evu207.


Development of a microsatellite primer set to investigate the genetic population structure of Armadillidium nasatum (Crustacea, Oniscidea).

Masson S, Faivre C, Giraud I, Souty-Grosset C, Cordaux R, Delaunay C, Bouchon D, Bech N.

J Genet. 2014 Aug;93(2):545-9. No abstract available.


Remarkable diversity of endogenous viruses in a crustacean genome.

Thézé J, Leclercq S, Moumen B, Cordaux R, Gilbert C.

Genome Biol Evol. 2014 Aug;6(8):2129-40. doi: 10.1093/gbe/evu163.


Population genomics supports baculoviruses as vectors of horizontal transfer of insect transposons.

Gilbert C, Chateigner A, Ernenwein L, Barbe V, Bézier A, Herniou EA, Cordaux R.

Nat Commun. 2014;5:3348. doi: 10.1038/ncomms4348.


Phylogenomics of "Candidatus Hepatoplasma crinochetorum," a lineage of mollicutes associated with noninsect arthropods.

Leclercq S, Dittmer J, Bouchon D, Cordaux R.

Genome Biol Evol. 2014 Feb;6(2):407-15. doi: 10.1093/gbe/evu020.


Isolation and characterization of microsatellite loci for the isopod crustacean Armadillidium vulgare and transferability in terrestrial isopods.

Giraud I, Valette V, Bech N, Grandjean F, Cordaux R.

PLoS One. 2013 Oct 3;8(10):e76639. doi: 10.1371/journal.pone.0076639. eCollection 2013.


Phylogenomics and analysis of shared genes suggest a single transition to mutualism in Wolbachia of nematodes.

Comandatore F, Sassera D, Montagna M, Kumar S, Koutsovoulos G, Thomas G, Repton C, Babayan SA, Gray N, Cordaux R, Darby A, Makepeace B, Blaxter M.

Genome Biol Evol. 2013;5(9):1668-74. doi: 10.1093/gbe/evt125.


Horizontal transfer and evolution of prokaryote transposable elements in eukaryotes.

Gilbert C, Cordaux R.

Genome Biol Evol. 2013;5(5):822-32. doi: 10.1093/gbe/evt057.


Selection-driven extinction dynamics for group II introns in Enterobacteriales.

Leclercq S, Cordaux R.

PLoS One. 2012;7(12):e52268. doi: 10.1371/journal.pone.0052268. Epub 2012 Dec 14.


International Congress on Transposable Elements (ICTE) 2012 in Saint Malo and the sea of TE stories.

Ainouche A, Bétermier M, Chandler M, Cordaux R, Cristofari G, Deragon JM, Lesage P, Panaud O, Quesneville H, Vaury C, Vieira C, Vitte C.

Mob DNA. 2012 Oct 30;3(1):17. doi: 10.1186/1759-8753-3-17.


Analysis of gene expression from the Wolbachia genome of a filarial nematode supports both metabolic and defensive roles within the symbiosis.

Darby AC, Armstrong SD, Bah GS, Kaur G, Hughes MA, Kay SM, Koldkjær P, Rainbow L, Radford AD, Blaxter ML, Tanya VN, Trees AJ, Cordaux R, Wastling JM, Makepeace BL.

Genome Res. 2012 Dec;22(12):2467-77. doi: 10.1101/gr.138420.112. Epub 2012 Aug 23.


Widespread Wolbachia infection in terrestrial isopods and other crustaceans.

Cordaux R, Pichon S, Hatira HB, Doublet V, Grève P, Marcadé I, Braquart-Varnier C, Souty-Grosset C, Charfi-Cheikhrouha F, Bouchon D.

Zookeys. 2012;(176):123-31. doi: 10.3897/zookeys.176.2284. Epub 2012 Mar 20.


Do phages efficiently shuttle transposable elements among prokaryotes?

Leclercq S, Cordaux R.

Evolution. 2011 Nov;65(11):3327-31. doi: 10.1111/j.1558-5646.2011.01395.x. Epub 2011 Sep 13.


Short- and long-term evolutionary dynamics of bacterial insertion sequences: insights from Wolbachia endosymbionts.

Cerveau N, Leclercq S, Leroy E, Bouchon D, Cordaux R.

Genome Biol Evol. 2011;3:1175-86. doi: 10.1093/gbe/evr096. Epub 2011 Sep 22.


The impact of endosymbionts on the evolution of host sex-determination mechanisms.

Cordaux R, Bouchon D, Grève P.

Trends Genet. 2011 Aug;27(8):332-41. doi: 10.1016/j.tig.2011.05.002. Epub 2011 Jun 12. Review.


Insertion sequence inversions mediated by ectopic recombination between terminal inverted repeats.

Ling A, Cordaux R.

PLoS One. 2010 Dec 20;5(12):e15654. doi: 10.1371/journal.pone.0015654.


Remarkable abundance and evolution of mobile group II introns in Wolbachia bacterial endosymbionts.

Leclercq S, Giraud I, Cordaux R.

Mol Biol Evol. 2011 Jan;28(1):685-97. doi: 10.1093/molbev/msq238. Epub 2010 Sep 6.


Computational methods for the analysis of primate mobile elements.

Cordaux R, Sen SK, Konkel MK, Batzer MA.

Methods Mol Biol. 2010;628:137-51. doi: 10.1007/978-1-60327-367-1_8. Review.


The impact of retrotransposons on human genome evolution.

Cordaux R, Batzer MA.

Nat Rev Genet. 2009 Oct;10(10):691-703. doi: 10.1038/nrg2640. Review.


Conservation of the Type IV secretion system throughout Wolbachia evolution.

Pichon S, Bouchon D, Cordaux R, Chen L, Garrett RA, Grève P.

Biochem Biophys Res Commun. 2009 Aug 7;385(4):557-62. doi: 10.1016/j.bbrc.2009.05.118. Epub 2009 May 30.


Gene conversion maintains nonfunctional transposable elements in an obligate mutualistic endosymbiont.

Cordaux R.

Mol Biol Evol. 2009 Aug;26(8):1679-82. doi: 10.1093/molbev/msp093. Epub 2009 May 4.


The human genome in the LINE of fire.

Cordaux R.

Proc Natl Acad Sci U S A. 2008 Dec 9;105(49):19033-4. doi: 10.1073/pnas.0810202105. Epub 2008 Dec 4. Review. No abstract available.


A thirty million year-old inherited heteroplasmy.

Doublet V, Souty-Grosset C, Bouchon D, Cordaux R, Marcadé I.

PLoS One. 2008 Aug 13;3(8):e2938. doi: 10.1371/journal.pone.0002938.


Intense transpositional activity of insertion sequences in an ancient obligate endosymbiont.

Cordaux R, Pichon S, Ling A, Pérez P, Delaunay C, Vavre F, Bouchon D, Grève P.

Mol Biol Evol. 2008 Sep;25(9):1889-96. doi: 10.1093/molbev/msn134. Epub 2008 Jun 17.

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