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Items: 14

1.

Predicting changes in protein stability caused by mutation using sequence-and structure-based methods in a CAGI5 blind challenge.

Strokach A, Corbi-Verge C, Kim PM.

Hum Mutat. 2019 Jun 27. doi: 10.1002/humu.23852. [Epub ahead of print]

PMID:
31243847
2.

Evaluating the predictions of the protein stability change upon single amino acid substitutions for the FXN CAGI5 challenge.

Savojardo C, Petrosino M, Babbi G, Bovo S, Corbi-Verge C, Casadio R, Fariselli P, Folkman L, Garg A, Karimi M, Katsonis P, Kim PM, Lichtarge O, Martelli PL, Pasquo A, Pal D, Shen Y, Strokach AV, Turina P, Zhou Y, Andreoletti G, Brenner SE, Chiaraluce R, Consalvi V, Capriotti E.

Hum Mutat. 2019 Jun 17. doi: 10.1002/humu.23843. [Epub ahead of print]

PMID:
31209948
3.

A Multireporter Bacterial 2-Hybrid Assay for the High-Throughput and Dynamic Assay of PDZ Domain-Peptide Interactions.

Ichikawa DM, Corbi-Verge C, Shen MJ, Snider J, Wong V, Stagljar I, Kim PM, Noyes MB.

ACS Synth Biol. 2019 May 17;8(5):918-928. doi: 10.1021/acssynbio.8b00499. Epub 2019 Apr 18.

PMID:
30969105
4.

Rapid and accurate structure-based therapeutic peptide design using GPU accelerated thermodynamic integration.

Garton M, Corbi-Verge C, Hu Y, Nim S, Tarasova N, Sherborne B, Kim PM.

Proteins. 2019 Mar;87(3):236-244. doi: 10.1002/prot.25644. Epub 2019 Jan 4.

PMID:
30520126
5.

Allosteric Modulation of Binding Specificity by Alternative Packing of Protein Cores.

Ben-David M, Huang H, Sun MGF, Corbi-Verge C, Petsalaki E, Liu K, Gfeller D, Garg P, Tempel W, Sochirca I, Shifman JM, Davidson A, Min J, Kim PM, Sidhu SS.

J Mol Biol. 2019 Jan 18;431(2):336-350. doi: 10.1016/j.jmb.2018.11.018. Epub 2018 Nov 22.

PMID:
30471255
6.

A PxL motif promotes timely cell cycle substrate dephosphorylation by the Cdc14 phosphatase.

Kataria M, Mouilleron S, Seo MH, Corbi-Verge C, Kim PM, Uhlmann F.

Nat Struct Mol Biol. 2018 Dec;25(12):1093-1102. doi: 10.1038/s41594-018-0152-3. Epub 2018 Nov 19.

7.

Predicting the Effect of Mutations on Protein Folding and Protein-Protein Interactions.

Strokach A, Corbi-Verge C, Teyra J, Kim PM.

Methods Mol Biol. 2019;1851:1-17. doi: 10.1007/978-1-4939-8736-8_1.

PMID:
30298389
8.

Strategies to Develop Inhibitors of Motif-Mediated Protein-Protein Interactions as Drug Leads.

Corbi-Verge C, Garton M, Nim S, Kim PM.

Annu Rev Pharmacol Toxicol. 2017 Jan 6;57:39-60. doi: 10.1146/annurev-pharmtox-010716-104805. Epub 2016 Sep 8. Review.

PMID:
27618737
9.

Protein engineering by highly parallel screening of computationally designed variants.

Sun MG, Seo MH, Nim S, Corbi-Verge C, Kim PM.

Sci Adv. 2016 Jul 20;2(7):e1600692. doi: 10.1126/sciadv.1600692. eCollection 2016 Jul.

10.

Motif mediated protein-protein interactions as drug targets.

Corbi-Verge C, Kim PM.

Cell Commun Signal. 2016 Mar 2;14:8. doi: 10.1186/s12964-016-0131-4. Review.

11.

Pooled screening for antiproliferative inhibitors of protein-protein interactions.

Nim S, Jeon J, Corbi-Verge C, Seo MH, Ivarsson Y, Moffat J, Tarasova N, Kim PM.

Nat Chem Biol. 2016 Apr;12(4):275-81. doi: 10.1038/nchembio.2026. Epub 2016 Feb 22.

12.

Semi-supervised Learning Predicts Approximately One Third of the Alternative Splicing Isoforms as Functional Proteins.

Hao Y, Colak R, Teyra J, Corbi-Verge C, Ignatchenko A, Hahne H, Wilhelm M, Kuster B, Braun P, Kaida D, Kislinger T, Kim PM.

Cell Rep. 2015 Jul 14;12(2):183-9. doi: 10.1016/j.celrep.2015.06.031. Epub 2015 Jul 2.

13.

Post-translational modifications modulate ligand recognition by the third PDZ domain of the MAGUK protein PSD-95.

Murciano-Calles J, Corbi-Verge C, Candel AM, Luque I, Martinez JC.

PLoS One. 2014 Feb 26;9(2):e90030. doi: 10.1371/journal.pone.0090030. eCollection 2014.

14.

Two-state dynamics of the SH3-SH2 tandem of Abl kinase and the allosteric role of the N-cap.

Corbi-Verge C, Marinelli F, Zafra-Ruano A, Ruiz-Sanz J, Luque I, Faraldo-Gómez JD.

Proc Natl Acad Sci U S A. 2013 Sep 3;110(36):E3372-80. doi: 10.1073/pnas.1303966110. Epub 2013 Aug 19.

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