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Items: 37

1.

The first day of the Cenozoic.

Gulick SPS, Bralower TJ, Ormö J, Hall B, Grice K, Schaefer B, Lyons S, Freeman KH, Morgan JV, Artemieva N, Kaskes P, de Graaff SJ, Whalen MT, Collins GS, Tikoo SM, Verhagen C, Christeson GL, Claeys P, Coolen MJL, Goderis S, Goto K, Grieve RAF, McCall N, Osinski GR, Rae ASP, Riller U, Smit J, Vajda V, Wittmann A; Expedition 364 Scientists.

Proc Natl Acad Sci U S A. 2019 Sep 24;116(39):19342-19351. doi: 10.1073/pnas.1909479116. Epub 2019 Sep 9.

PMID:
31501350
2.

Biochemical diversity of glycosphingolipid biosynthesis as a driver of Coccolithovirus competitive ecology.

Nissimov JI, Talmy D, Haramaty L, Fredricks HF, Zelzion E, Knowles B, Eren AM, Vandzura R, Laber CP, Schieler BM, Johns CT, More KD, Coolen MJL, Follows MJ, Bhattacharya D, Van Mooy BAS, Bidle KD.

Environ Microbiol. 2019 Jun;21(6):2182-2197. doi: 10.1111/1462-2920.14633. Epub 2019 May 20.

PMID:
31001863
3.

Holocene paleodepositional changes reflected in the sedimentary microbiome of the Black Sea.

More KD, Giosan L, Grice K, Coolen MJL.

Geobiology. 2019 Jul;17(4):436-448. doi: 10.1111/gbi.12338. Epub 2019 Mar 6.

PMID:
30843322
4.

Nitric oxide production and antioxidant function during viral infection of the coccolithophore Emiliania huxleyi.

Schieler BM, Soni MV, Brown CM, Coolen MJL, Fredricks H, Van Mooy BAS, Hirsh DJ, Bidle KD.

ISME J. 2019 Apr;13(4):1019-1031. doi: 10.1038/s41396-018-0325-4. Epub 2019 Jan 3.

5.

Light regulation of coccolithophore host-virus interactions.

Thamatrakoln K, Talmy D, Haramaty L, Maniscalco C, Latham JR, Knowles B, Natale F, Coolen MJL, Follows MJ, Bidle KD.

New Phytol. 2019 Feb;221(3):1289-1302. doi: 10.1111/nph.15459. Epub 2018 Oct 8.

PMID:
30368816
6.

Metagenomics of pigmented and cholesterol gallstones: the putative role of bacteria.

Kose SH, Grice K, Orsi WD, Ballal M, Coolen MJL.

Sci Rep. 2018 Jul 25;8(1):11218. doi: 10.1038/s41598-018-29571-8.

7.

Rapid recovery of life at ground zero of the end-Cretaceous mass extinction.

Lowery CM, Bralower TJ, Owens JD, Rodríguez-Tovar FJ, Jones H, Smit J, Whalen MT, Claeys P, Farley K, Gulick SPS, Morgan JV, Green S, Chenot E, Christeson GL, Cockell CS, Coolen MJL, Ferrière L, Gebhardt C, Goto K, Kring DA, Lofi J, Ocampo-Torres R, Perez-Cruz L, Pickersgill AE, Poelchau MH, Rae ASP, Rasmussen C, Rebolledo-Vieyra M, Riller U, Sato H, Tikoo SM, Tomioka N, Urrutia-Fucugauchi J, Vellekoop J, Wittmann A, Xiao L, Yamaguchi KE, Zylberman W.

Nature. 2018 Jun;558(7709):288-291. doi: 10.1038/s41586-018-0163-6. Epub 2018 May 30.

8.

Coccolithovirus facilitation of carbon export in the North Atlantic.

Laber CP, Hunter JE, Carvalho F, Collins JR, Hunter EJ, Schieler BM, Boss E, More K, Frada M, Thamatrakoln K, Brown CM, Haramaty L, Ossolinski J, Fredricks H, Nissimov JI, Vandzura R, Sheyn U, Lehahn Y, Chant RJ, Martins AM, Coolen MJL, Vardi A, DiTullio GR, Van Mooy BAS, Bidle KD.

Nat Microbiol. 2018 May;3(5):537-547. doi: 10.1038/s41564-018-0128-4. Epub 2018 Mar 12.

PMID:
29531367
9.

Palaeobiology of red and white blood cell-like structures, collagen and cholesterol in an ichthyosaur bone.

Plet C, Grice K, Pagès A, Verrall M, Coolen MJL, Ruebsam W, Rickard WDA, Schwark L.

Sci Rep. 2017 Oct 23;7(1):13776. doi: 10.1038/s41598-017-13873-4.

10.

Climate oscillations reflected within the microbiome of Arabian Sea sediments.

Orsi WD, Coolen MJL, Wuchter C, He L, More KD, Irigoien X, Chust G, Johnson C, Hemingway JD, Lee M, Galy V, Giosan L.

Sci Rep. 2017 Jul 20;7(1):6040. doi: 10.1038/s41598-017-05590-9.

11.

Seqenv: linking sequences to environments through text mining.

Sinclair L, Ijaz UZ, Jensen LJ, Coolen MJL, Gubry-Rangin C, Chroňáková A, Oulas A, Pavloudi C, Schnetzer J, Weimann A, Ijaz A, Eiler A, Quince C, Pafilis E.

PeerJ. 2016 Dec 20;4:e2690. doi: 10.7717/peerj.2690. eCollection 2016.

12.

The formation of peak rings in large impact craters.

Morgan JV, Gulick SP, Bralower T, Chenot E, Christeson G, Claeys P, Cockell C, Collins GS, Coolen MJ, Ferrière L, Gebhardt C, Goto K, Jones H, Kring DA, Le Ber E, Lofi J, Long X, Lowery C, Mellett C, Ocampo-Torres R, Osinski GR, Perez-Cruz L, Pickersgill A, Poelchau M, Rae A, Rasmussen C, Rebolledo-Vieyra M, Riller U, Sato H, Schmitt DR, Smit J, Tikoo S, Tomioka N, Urrutia-Fucugauchi J, Whalen M, Wittmann A, Yamaguchi KE, Zylberman W.

Science. 2016 Nov 18;354(6314):878-882.

13.

The transcriptional response of microbial communities in thawing Alaskan permafrost soils.

Coolen MJ, Orsi WD.

Front Microbiol. 2015 Mar 16;6:197. doi: 10.3389/fmicb.2015.00197. eCollection 2015.

14.

Identification of photosynthetic plankton communities using sedimentary ancient DNA and their response to late-Holocene climate change on the Tibetan Plateau.

Hou W, Dong H, Li G, Yang J, Coolen MJ, Liu X, Wang S, Jiang H, Wu X, Xiao H, Lian B, Wan Y.

Sci Rep. 2014 Oct 17;4:6648. doi: 10.1038/srep06648.

15.

Decoupling physical from biological processes to assess the impact of viruses on a mesoscale algal bloom.

Lehahn Y, Koren I, Schatz D, Frada M, Sheyn U, Boss E, Efrati S, Rudich Y, Trainic M, Sharoni S, Laber C, DiTullio GR, Coolen MJ, Martins AM, Van Mooy BA, Bidle KD, Vardi A.

Curr Biol. 2014 Sep 8;24(17):2041-6. doi: 10.1016/j.cub.2014.07.046. Epub 2014 Aug 21.

16.

Microbial diversity and methanogenic activity of Antrim Shale formation waters from recently fractured wells.

Wuchter C, Banning E, Mincer TJ, Drenzek NJ, Coolen MJ.

Front Microbiol. 2013 Dec 6;4:367. doi: 10.3389/fmicb.2013.00367. eCollection 2013.

17.

Evolution of the plankton paleome in the Black Sea from the Deglacial to Anthropocene.

Coolen MJ, Orsi WD, Balkema C, Quince C, Harris K, Sylva SP, Filipova-Marinova M, Giosan L.

Proc Natl Acad Sci U S A. 2013 May 21;110(21):8609-14. doi: 10.1073/pnas.1219283110. Epub 2013 May 6.

18.

Early anthropogenic transformation of the Danube-Black Sea system.

Giosan L, Coolen MJ, Kaplan JO, Constantinescu S, Filip F, Filipova-Marinova M, Kettner AJ, Thom N.

Sci Rep. 2012;2:582. doi: 10.1038/srep00582. Epub 2012 Aug 30.

19.

Unique prokaryotic consortia in geochemically distinct sediments from Red Sea Atlantis II and discovery deep brine pools.

Siam R, Mustafa GA, Sharaf H, Moustafa A, Ramadan AR, Antunes A, Bajic VB, Stingl U, Marsis NG, Coolen MJ, Sogin M, Ferreira AJ, Dorry HE.

PLoS One. 2012;7(8):e42872. doi: 10.1371/journal.pone.0042872. Epub 2012 Aug 20.

20.

Preservation potential of ancient plankton DNA in Pleistocene marine sediments.

Boere AC, Rijpstra WI, De Lange GJ, Sinninghe Damsté JS, Coolen MJ.

Geobiology. 2011 Sep;9(5):377-93. doi: 10.1111/j.1472-4669.2011.00290.x.

PMID:
21884361
21.

7000 years of Emiliania huxleyi viruses in the Black Sea.

Coolen MJ.

Science. 2011 Jul 22;333(6041):451-2. doi: 10.1126/science.1200072.

22.

Bioavailability of soil organic matter and microbial community dynamics upon permafrost thaw.

Coolen MJ, van de Giessen J, Zhu EY, Wuchter C.

Environ Microbiol. 2011 Aug;13(8):2299-314. doi: 10.1111/j.1462-2920.2011.02489.x. Epub 2011 May 9.

PMID:
21554513
23.

Vertical distribution of metabolically active eukaryotes in the water column and sediments of the Black Sea.

Coolen MJ, Shtereva G.

FEMS Microbiol Ecol. 2009 Dec;70(3):525-39. doi: 10.1111/j.1574-6941.2009.00756.x. Epub 2009 Aug 3.

24.

Late-Holocene succession of dinoflagellates in an Antarctic fjord using a multi-proxy approach: paleoenvironmental genomics, lipid biomarkers and palynomorphs.

Boere AC, Abbas B, Rijpstra WI, Versteegh GJ, Volkman JK, Sinninghe Damsté JS, Coolen MJ.

Geobiology. 2009 Jun;7(3):265-81. doi: 10.1111/j.1472-4669.2009.00202.x. Epub 2009 Jun 9.

PMID:
19515203
25.

Sources for sedimentary bacteriohopanepolyols as revealed by 16S rDNA stratigraphy.

Coolen MJ, Talbot HM, Abbas BA, Ward C, Schouten S, Volkman JK, Damsté JS.

Environ Microbiol. 2008 Jul;10(7):1783-803. doi: 10.1111/j.1462-2920.2008.01601.x. Epub 2008 Apr 8.

PMID:
18397311
26.

Variations in spatial and temporal distribution of Archaea in the North Sea in relation to environmental variables.

Herfort L, Schouten S, Abbas B, Veldhuis MJ, Coolen MJ, Wuchter C, Boon JP, Herndl GJ, Sinninghe Damsté JS.

FEMS Microbiol Ecol. 2007 Dec;62(3):242-57.

27.

Putative ammonia-oxidizing Crenarchaeota in suboxic waters of the Black Sea: a basin-wide ecological study using 16S ribosomal and functional genes and membrane lipids.

Coolen MJ, Abbas B, van Bleijswijk J, Hopmans EC, Kuypers MM, Wakeham SG, Sinninghe Damsté JS.

Environ Microbiol. 2007 Apr;9(4):1001-16.

PMID:
17359272
29.

Aerobic and anaerobic methanotrophs in the Black Sea water column.

Schubert CJ, Coolen MJ, Neretin LN, Schippers A, Abbas B, Durisch-Kaiser E, Wehrli B, Hopmans EC, Damsté JS, Wakeham S, Kuypers MM.

Environ Microbiol. 2006 Oct;8(10):1844-56.

PMID:
16958765
30.

Archaeal nitrification in the ocean.

Wuchter C, Abbas B, Coolen MJ, Herfort L, van Bleijswijk J, Timmers P, Strous M, Teira E, Herndl GJ, Middelburg JJ, Schouten S, Sinninghe Damsté JS.

Proc Natl Acad Sci U S A. 2006 Aug 15;103(33):12317-22. Epub 2006 Aug 7. Erratum in: Proc Natl Acad Sci U S A. 2007 Mar 27;104(13):5704.

31.

Fossil DNA in cretaceous black shales: myth or reality?

Damsté JS, Coolen MJ.

Astrobiology. 2006 Apr;6(2):299-302. No abstract available.

PMID:
16689647
32.
33.

Ongoing modification of Mediterranean Pleistocene sapropels mediated by prokaryotes.

Coolen MJ, Cypionka H, Sass AM, Sass H, Overmann J.

Science. 2002 Jun 28;296(5577):2407-10.

34.

Microbial communities in the chemocline of a hypersaline deep-sea basin (Urania basin, Mediterranean Sea).

Sass AM, Sass H, Coolen MJ, Cypionka H, Overmann J.

Appl Environ Microbiol. 2001 Dec;67(12):5392-402.

37.

Analysis of subfossil molecular remains of purple sulfur bacteria in a lake sediment.

Coolen MJ, Overmann J.

Appl Environ Microbiol. 1998 Nov;64(11):4513-21.

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