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Items: 1 to 50 of 85

1.

The first day of the Cenozoic.

Gulick SPS, Bralower TJ, Ormö J, Hall B, Grice K, Schaefer B, Lyons S, Freeman KH, Morgan JV, Artemieva N, Kaskes P, de Graaff SJ, Whalen MT, Collins GS, Tikoo SM, Verhagen C, Christeson GL, Claeys P, Coolen MJL, Goderis S, Goto K, Grieve RAF, McCall N, Osinski GR, Rae ASP, Riller U, Smit J, Vajda V, Wittmann A; Expedition 364 Scientists.

Proc Natl Acad Sci U S A. 2019 Sep 24;116(39):19342-19351. doi: 10.1073/pnas.1909479116. Epub 2019 Sep 9.

PMID:
31501350
2.

Biochemical diversity of glycosphingolipid biosynthesis as a driver of Coccolithovirus competitive ecology.

Nissimov JI, Talmy D, Haramaty L, Fredricks HF, Zelzion E, Knowles B, Eren AM, Vandzura R, Laber CP, Schieler BM, Johns CT, More KD, Coolen MJL, Follows MJ, Bhattacharya D, Van Mooy BAS, Bidle KD.

Environ Microbiol. 2019 Jun;21(6):2182-2197. doi: 10.1111/1462-2920.14633. Epub 2019 May 20.

PMID:
31001863
3.

Holocene paleodepositional changes reflected in the sedimentary microbiome of the Black Sea.

More KD, Giosan L, Grice K, Coolen MJL.

Geobiology. 2019 Jul;17(4):436-448. doi: 10.1111/gbi.12338. Epub 2019 Mar 6.

PMID:
30843322
4.

Nitric oxide production and antioxidant function during viral infection of the coccolithophore Emiliania huxleyi.

Schieler BM, Soni MV, Brown CM, Coolen MJL, Fredricks H, Van Mooy BAS, Hirsh DJ, Bidle KD.

ISME J. 2019 Apr;13(4):1019-1031. doi: 10.1038/s41396-018-0325-4. Epub 2019 Jan 3.

5.

Light regulation of coccolithophore host-virus interactions.

Thamatrakoln K, Talmy D, Haramaty L, Maniscalco C, Latham JR, Knowles B, Natale F, Coolen MJL, Follows MJ, Bidle KD.

New Phytol. 2019 Feb;221(3):1289-1302. doi: 10.1111/nph.15459. Epub 2018 Oct 8.

PMID:
30368816
6.

Metagenomics of pigmented and cholesterol gallstones: the putative role of bacteria.

Kose SH, Grice K, Orsi WD, Ballal M, Coolen MJL.

Sci Rep. 2018 Jul 25;8(1):11218. doi: 10.1038/s41598-018-29571-8.

7.

Rapid recovery of life at ground zero of the end-Cretaceous mass extinction.

Lowery CM, Bralower TJ, Owens JD, Rodríguez-Tovar FJ, Jones H, Smit J, Whalen MT, Claeys P, Farley K, Gulick SPS, Morgan JV, Green S, Chenot E, Christeson GL, Cockell CS, Coolen MJL, Ferrière L, Gebhardt C, Goto K, Kring DA, Lofi J, Ocampo-Torres R, Perez-Cruz L, Pickersgill AE, Poelchau MH, Rae ASP, Rasmussen C, Rebolledo-Vieyra M, Riller U, Sato H, Tikoo SM, Tomioka N, Urrutia-Fucugauchi J, Vellekoop J, Wittmann A, Xiao L, Yamaguchi KE, Zylberman W.

Nature. 2018 Jun;558(7709):288-291. doi: 10.1038/s41586-018-0163-6. Epub 2018 May 30.

8.

Coccolithovirus facilitation of carbon export in the North Atlantic.

Laber CP, Hunter JE, Carvalho F, Collins JR, Hunter EJ, Schieler BM, Boss E, More K, Frada M, Thamatrakoln K, Brown CM, Haramaty L, Ossolinski J, Fredricks H, Nissimov JI, Vandzura R, Sheyn U, Lehahn Y, Chant RJ, Martins AM, Coolen MJL, Vardi A, DiTullio GR, Van Mooy BAS, Bidle KD.

Nat Microbiol. 2018 May;3(5):537-547. doi: 10.1038/s41564-018-0128-4. Epub 2018 Mar 12.

PMID:
29531367
9.

Life-Long Neurogenic Activity of Individual Neural Stem Cells and Continuous Growth Establish an Outside-In Architecture in the Teleost Pallium.

Furlan G, Cuccioli V, Vuillemin N, Dirian L, Muntasell AJ, Coolen M, Dray N, Bedu S, Houart C, Beaurepaire E, Foucher I, Bally-Cuif L.

Curr Biol. 2017 Nov 6;27(21):3288-3301.e3. doi: 10.1016/j.cub.2017.09.052. Epub 2017 Oct 26.

10.

Palaeobiology of red and white blood cell-like structures, collagen and cholesterol in an ichthyosaur bone.

Plet C, Grice K, Pagès A, Verrall M, Coolen MJL, Ruebsam W, Rickard WDA, Schwark L.

Sci Rep. 2017 Oct 23;7(1):13776. doi: 10.1038/s41598-017-13873-4.

11.

Noradrenergic activation of the basolateral amygdala maintains hippocampus-dependent accuracy of remote memory.

Atucha E, Vukojevic V, Fornari RV, Ronzoni G, Demougin P, Peter F, Atsak P, Coolen MW, Papassotiropoulos A, McGaugh JL, de Quervain DJ, Roozendaal B.

Proc Natl Acad Sci U S A. 2017 Aug 22;114(34):9176-9181. doi: 10.1073/pnas.1710819114. Epub 2017 Aug 8.

12.

Climate oscillations reflected within the microbiome of Arabian Sea sediments.

Orsi WD, Coolen MJL, Wuchter C, He L, More KD, Irigoien X, Chust G, Johnson C, Hemingway JD, Lee M, Galy V, Giosan L.

Sci Rep. 2017 Jul 20;7(1):6040. doi: 10.1038/s41598-017-05590-9.

13.

Seqenv: linking sequences to environments through text mining.

Sinclair L, Ijaz UZ, Jensen LJ, Coolen MJL, Gubry-Rangin C, Chroňáková A, Oulas A, Pavloudi C, Schnetzer J, Weimann A, Ijaz A, Eiler A, Quince C, Pafilis E.

PeerJ. 2016 Dec 20;4:e2690. doi: 10.7717/peerj.2690. eCollection 2016.

14.

The formation of peak rings in large impact craters.

Morgan JV, Gulick SP, Bralower T, Chenot E, Christeson G, Claeys P, Cockell C, Collins GS, Coolen MJ, Ferrière L, Gebhardt C, Goto K, Jones H, Kring DA, Le Ber E, Lofi J, Long X, Lowery C, Mellett C, Ocampo-Torres R, Osinski GR, Perez-Cruz L, Pickersgill A, Poelchau M, Rae A, Rasmussen C, Rebolledo-Vieyra M, Riller U, Sato H, Schmitt DR, Smit J, Tikoo S, Tomioka N, Urrutia-Fucugauchi J, Whalen M, Wittmann A, Yamaguchi KE, Zylberman W.

Science. 2016 Nov 18;354(6314):878-882.

15.

Embryonic origin and lineage hierarchies of the neural progenitor subtypes building the zebrafish adult midbrain.

Galant S, Furlan G, Coolen M, Dirian L, Foucher I, Bally-Cuif L.

Dev Biol. 2016 Dec 1;420(1):120-135. doi: 10.1016/j.ydbio.2016.09.022. Epub 2016 Sep 28.

16.

A Nuclear Role for miR-9 and Argonaute Proteins in Balancing Quiescent and Activated Neural Stem Cell States.

Katz S, Cussigh D, Urbán N, Blomfield I, Guillemot F, Bally-Cuif L, Coolen M.

Cell Rep. 2016 Oct 25;17(5):1383-1398. doi: 10.1016/j.celrep.2016.09.088.

17.

Transcriptional, post-transcriptional and chromatin-associated regulation of pri-miRNAs, pre-miRNAs and moRNAs.

Nepal C, Coolen M, Hadzhiev Y, Cussigh D, Mydel P, Steen VM, Carninci P, Andersen JB, Bally-Cuif L, Müller F, Lenhard B.

Nucleic Acids Res. 2016 Apr 20;44(7):3070-81. doi: 10.1093/nar/gkv1354. Epub 2015 Dec 15.

18.

Large-scale live imaging of adult neural stem cells in their endogenous niche.

Dray N, Bedu S, Vuillemin N, Alunni A, Coolen M, Krecsmarik M, Supatto W, Beaurepaire E, Bally-Cuif L.

Development. 2015 Oct 15;142(20):3592-600. doi: 10.1242/dev.123018. Epub 2015 Sep 22.

19.

The transcriptional response of microbial communities in thawing Alaskan permafrost soils.

Coolen MJ, Orsi WD.

Front Microbiol. 2015 Mar 16;6:197. doi: 10.3389/fmicb.2015.00197. eCollection 2015.

20.

Mechanisms of endoderm formation in a cartilaginous fish reveal ancestral and homoplastic traits in jawed vertebrates.

Godard BG, Coolen M, Le Panse S, Gombault A, Ferreiro-Galve S, Laguerre L, Lagadec R, Wincker P, Poulain J, Da Silva C, Kuraku S, Carre W, Boutet A, Mazan S.

Biol Open. 2014 Oct 31;3(11):1098-107. doi: 10.1242/bio.20148037.

21.

Identification of photosynthetic plankton communities using sedimentary ancient DNA and their response to late-Holocene climate change on the Tibetan Plateau.

Hou W, Dong H, Li G, Yang J, Coolen MJ, Liu X, Wang S, Jiang H, Wu X, Xiao H, Lian B, Wan Y.

Sci Rep. 2014 Oct 17;4:6648. doi: 10.1038/srep06648.

22.

Decoupling physical from biological processes to assess the impact of viruses on a mesoscale algal bloom.

Lehahn Y, Koren I, Schatz D, Frada M, Sheyn U, Boss E, Efrati S, Rudich Y, Trainic M, Sharoni S, Laber C, DiTullio GR, Coolen MJ, Martins AM, Van Mooy BA, Bidle KD, Vardi A.

Curr Biol. 2014 Sep 8;24(17):2041-6. doi: 10.1016/j.cub.2014.07.046. Epub 2014 Aug 21.

23.

A self-organizing miR-132/Ctbp2 circuit regulates bimodal notch signals and glial progenitor fate choice during spinal cord maturation.

Salta E, Lau P, Sala Frigerio C, Coolen M, Bally-Cuif L, De Strooper B.

Dev Cell. 2014 Aug 25;30(4):423-36. doi: 10.1016/j.devcel.2014.07.006. Epub 2014 Aug 14.

24.

Spatial regionalization and heterochrony in the formation of adult pallial neural stem cells.

Dirian L, Galant S, Coolen M, Chen W, Bedu S, Houart C, Bally-Cuif L, Foucher I.

Dev Cell. 2014 Jul 28;30(2):123-36. doi: 10.1016/j.devcel.2014.05.012. Epub 2014 Jul 10.

25.

Microbial diversity and methanogenic activity of Antrim Shale formation waters from recently fractured wells.

Wuchter C, Banning E, Mincer TJ, Drenzek NJ, Coolen MJ.

Front Microbiol. 2013 Dec 6;4:367. doi: 10.3389/fmicb.2013.00367. eCollection 2013.

26.

miR-9: a versatile regulator of neurogenesis.

Coolen M, Katz S, Bally-Cuif L.

Front Cell Neurosci. 2013 Nov 20;7:220. doi: 10.3389/fncel.2013.00220. Review.

27.

[miR-9: a key factor of the physiopathological regulation of the neural progenitor state].

Coolen M, Bally-Cuif L.

Med Sci (Paris). 2013 Nov;29(11):1010-7. doi: 10.1051/medsci/20132911018. Epub 2013 Nov 20. Review. French.

28.

Regulatory Roles for Long ncRNA and mRNA.

Karapetyan AR, Buiting C, Kuiper RA, Coolen MW.

Cancers (Basel). 2013 Apr 26;5(2):462-90. doi: 10.3390/cancers5020462.

29.

GWAS of DNA methylation variation within imprinting control regions suggests parent-of-origin association.

Rentería ME, Coolen MW, Statham AL, Choi RS, Qu W, Campbell MJ, Smith S, Henders AK, Montgomery GW, Clark SJ, Martin NG, Medland SE.

Twin Res Hum Genet. 2013 Aug;16(4):767-81. doi: 10.1017/thg.2013.30. Epub 2013 Jun 3.

PMID:
23725790
30.

Evolution of the plankton paleome in the Black Sea from the Deglacial to Anthropocene.

Coolen MJ, Orsi WD, Balkema C, Quince C, Harris K, Sylva SP, Filipova-Marinova M, Giosan L.

Proc Natl Acad Sci U S A. 2013 May 21;110(21):8609-14. doi: 10.1073/pnas.1219283110. Epub 2013 May 6.

31.

Pattern and polarity in the development and evolution of the gnathostome jaw: both conservation and heterotopy in the branchial arches of the shark, Scyliorhinus canicula.

Compagnucci C, Debiais-Thibaud M, Coolen M, Fish J, Griffin JN, Bertocchini F, Minoux M, Rijli FM, Borday-Birraux V, Casane D, Mazan S, Depew MJ.

Dev Biol. 2013 May 15;377(2):428-48. doi: 10.1016/j.ydbio.2013.02.022. Epub 2013 Mar 7.

32.

Regional activation of the cancer genome by long-range epigenetic remodeling.

Bert SA, Robinson MD, Strbenac D, Statham AL, Song JZ, Hulf T, Sutherland RL, Coolen MW, Stirzaker C, Clark SJ.

Cancer Cell. 2013 Jan 14;23(1):9-22. doi: 10.1016/j.ccr.2012.11.006. Epub 2012 Dec 13.

33.

Early anthropogenic transformation of the Danube-Black Sea system.

Giosan L, Coolen MJ, Kaplan JO, Constantinescu S, Filip F, Filipova-Marinova M, Kettner AJ, Thom N.

Sci Rep. 2012;2:582. doi: 10.1038/srep00582. Epub 2012 Aug 30.

34.

The ADHD-linked gene Lphn3.1 controls locomotor activity and impulsivity in zebrafish.

Lange M, Norton W, Coolen M, Chaminade M, Merker S, Proft F, Schmitt A, Vernier P, Lesch KP, Bally-Cuif L.

Mol Psychiatry. 2012 Sep;17(9):855. doi: 10.1038/mp.2012.119. No abstract available.

PMID:
22918194
35.

Unique prokaryotic consortia in geochemically distinct sediments from Red Sea Atlantis II and discovery deep brine pools.

Siam R, Mustafa GA, Sharaf H, Moustafa A, Ramadan AR, Antunes A, Bajic VB, Stingl U, Marsis NG, Coolen MJ, Sogin M, Ferreira AJ, Dorry HE.

PLoS One. 2012;7(8):e42872. doi: 10.1371/journal.pone.0042872. Epub 2012 Aug 20.

36.

miR-9 controls the timing of neurogenesis through the direct inhibition of antagonistic factors.

Coolen M, Thieffry D, Drivenes Ø, Becker TS, Bally-Cuif L.

Dev Cell. 2012 May 15;22(5):1052-64. doi: 10.1016/j.devcel.2012.03.003.

37.

The ADHD-susceptibility gene lphn3.1 modulates dopaminergic neuron formation and locomotor activity during zebrafish development.

Lange M, Norton W, Coolen M, Chaminade M, Merker S, Proft F, Schmitt A, Vernier P, Lesch KP, Bally-Cuif L.

Mol Psychiatry. 2012 Sep;17(9):946-54. doi: 10.1038/mp.2012.29. Epub 2012 Apr 17.

PMID:
22508465
38.

Bisulfite sequencing of chromatin immunoprecipitated DNA (BisChIP-seq) directly informs methylation status of histone-modified DNA.

Statham AL, Robinson MD, Song JZ, Coolen MW, Stirzaker C, Clark SJ.

Genome Res. 2012 Jun;22(6):1120-7. doi: 10.1101/gr.132076.111. Epub 2012 Mar 30.

39.

Dietary methyl donor deficiency during pregnancy in rats shapes learning and anxiety in offspring.

Konycheva G, Dziadek MA, Ferguson LR, Krägeloh CU, Coolen MW, Davison M, Breier BH.

Nutr Res. 2011 Oct;31(10):790-804. doi: 10.1016/j.nutres.2011.09.015.

PMID:
22074804
40.

Impact of the genome on the epigenome is manifested in DNA methylation patterns of imprinted regions in monozygotic and dizygotic twins.

Coolen MW, Statham AL, Qu W, Campbell MJ, Henders AK, Montgomery GW, Martin NG, Clark SJ.

PLoS One. 2011;6(10):e25590. doi: 10.1371/journal.pone.0025590. Epub 2011 Oct 3.

41.

Preservation potential of ancient plankton DNA in Pleistocene marine sediments.

Boere AC, Rijpstra WI, De Lange GJ, Sinninghe Damsté JS, Coolen MJ.

Geobiology. 2011 Sep;9(5):377-93. doi: 10.1111/j.1472-4669.2011.00290.x.

PMID:
21884361
42.

Dynamics of bivalent chromatin domains upon drug induced reactivation and resilencing in cancer cells.

Mayor R, Muñoz M, Coolen MW, Custodio J, Esteller M, Clark SJ, Peinado MA.

Epigenetics. 2011 Sep 1;6(9):1138-48. doi: 10.4161/epi.6.9.16066. Epub 2011 Sep 1.

PMID:
21852760
43.

7000 years of Emiliania huxleyi viruses in the Black Sea.

Coolen MJ.

Science. 2011 Jul 22;333(6041):451-2. doi: 10.1126/science.1200072.

44.

The Enhancer of split transcription factor Her8a is a novel dimerisation partner for Her3 that controls anterior hindbrain neurogenesis in zebrafish.

Webb KJ, Coolen M, Gloeckner CJ, Stigloher C, Bahn B, Topp S, Ueffing M, Bally-Cuif L.

BMC Dev Biol. 2011 May 17;11:27. doi: 10.1186/1471-213X-11-27.

45.

Bioavailability of soil organic matter and microbial community dynamics upon permafrost thaw.

Coolen MJ, van de Giessen J, Zhu EY, Wuchter C.

Environ Microbiol. 2011 Aug;13(8):2299-314. doi: 10.1111/j.1462-2920.2011.02489.x. Epub 2011 May 9.

PMID:
21554513
46.

Her9 represses neurogenic fate downstream of Tbx1 and retinoic acid signaling in the inner ear.

Radosevic M, Robert-Moreno A, Coolen M, Bally-Cuif L, Alsina B.

Development. 2011 Feb;138(3):397-408. doi: 10.1242/dev.056093.

47.

Epigenetic deregulation across chromosome 2q14.2 differentiates normal from prostate cancer and provides a regional panel of novel DNA methylation cancer biomarkers.

Devaney J, Stirzaker C, Qu W, Song JZ, Statham AL, Patterson KI, Horvath LG, Tabor B, Coolen MW, Hulf T, Kench JG, Henshall SM, Pe Benito R, Haynes AM, Mayor R, Peinado MA, Sutherland RL, Clark SJ.

Cancer Epidemiol Biomarkers Prev. 2011 Jan;20(1):148-59. doi: 10.1158/1055-9965.EPI-10-0719. Epub 2010 Nov 23.

48.

Evaluation of affinity-based genome-wide DNA methylation data: effects of CpG density, amplification bias, and copy number variation.

Robinson MD, Stirzaker C, Statham AL, Coolen MW, Song JZ, Nair SS, Strbenac D, Speed TP, Clark SJ.

Genome Res. 2010 Dec;20(12):1719-29. doi: 10.1101/gr.110601.110. Epub 2010 Nov 2. Erratum in: Genome Res. 2011 Jan;21(1):146.

49.

Comparison of methyl-DNA immunoprecipitation (MeDIP) and methyl-CpG binding domain (MBD) protein capture for genome-wide DNA methylation analysis reveal CpG sequence coverage bias.

Nair SS, Coolen MW, Stirzaker C, Song JZ, Statham AL, Strbenac D, Robinson MD, Clark SJ.

Epigenetics. 2011 Jan;6(1):34-44. doi: 10.4161/epi.6.1.13313. Epub 2011 Jan 1.

PMID:
20818161
50.

Notch activity levels control the balance between quiescence and recruitment of adult neural stem cells.

Chapouton P, Skupien P, Hesl B, Coolen M, Moore JC, Madelaine R, Kremmer E, Faus-Kessler T, Blader P, Lawson ND, Bally-Cuif L.

J Neurosci. 2010 Jun 9;30(23):7961-74. doi: 10.1523/JNEUROSCI.6170-09.2010.

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