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Items: 1 to 50 of 102

1.

Back Pain in a 23-Year-Old Male With X-Linked Chronic Granulomatous Disease.

Sabo MC, Blain M, McCulloch D, Glasgow HL, Sengupta DJ, Le T, Cookson BT, Pottinger PS, Liles WC, Graham SM.

Open Forum Infect Dis. 2019 Oct 18;6(11):ofz449. doi: 10.1093/ofid/ofz449. eCollection 2019 Nov.

2.

Improved Species-Level Clinical Identification of Enterobacteriaceae through Broad-Range dnaJ PCR and Sequencing.

McLean K, Rosenthal CA, Sengupta D, Owens J, Cookson BT, Hoffman NG, Salipante SJ.

J Clin Microbiol. 2019 Oct 23;57(11). pii: e00986-19. doi: 10.1128/JCM.00986-19. Print 2019 Nov.

PMID:
31434720
3.

The signaling adaptor BCAP inhibits NLRP3 and NLRC4 inflammasome activation in macrophages through interactions with Flightless-1.

Carpentier SJ, Ni M, Duggan JM, James RG, Cookson BT, Hamerman JA.

Sci Signal. 2019 May 14;12(581). pii: eaau0615. doi: 10.1126/scisignal.aau0615.

4.

Diverse small molecules prevent macrophage lysis during pyroptosis.

Loomis WP, den Hartigh AB, Cookson BT, Fink SL.

Cell Death Dis. 2019 Apr 11;10(4):326. doi: 10.1038/s41419-019-1559-4.

5.
6.

Clinical Impact of a Multiplex Gastrointestinal Polymerase Chain Reaction Panel in Patients With Acute Gastroenteritis.

Cybulski RJ Jr, Bateman AC, Bourassa L, Bryan A, Beail B, Matsumoto J, Cookson BT, Fang FC.

Clin Infect Dis. 2018 Nov 13;67(11):1688-1696. doi: 10.1093/cid/ciy357.

PMID:
29697761
7.

Correction: A Year of Infection in the Intensive Care Unit: Prospective Whole Genome Sequencing of Bacterial Clinical Isolates Reveals Cryptic Transmissions and Novel Microbiota.

Roach DJ, Burton JN, Lee C, Stackhouse B, Butler-Wu SM, Cookson BT, Shendure J, Salipante SJ.

PLoS Genet. 2017 Apr 14;13(4):e1006724. doi: 10.1371/journal.pgen.1006724. eCollection 2017 Apr.

8.

Clinical Next Generation Sequencing Outperforms Standard Microbiological Culture for Characterizing Polymicrobial Samples.

Cummings LA, Kurosawa K, Hoogestraat DR, SenGupta DJ, Candra F, Doyle M, Thielges S, Land TA, Rosenthal CA, Hoffman NG, Salipante SJ, Cookson BT.

Clin Chem. 2016 Nov;62(11):1465-1473. Epub 2016 Sep 13.

9.

Erratum for Salipante et al., Performance Comparison of Illumina and Ion Torrent Next-Generation Sequencing Platforms for 16S rRNA-Based Bacterial Community Profiling.

Salipante SJ, Kawashima T, Rosenthal C, Hoogestraat DR, Cummings LA, Sengupta DJ, Harkins TT, Cookson BT, Hoffman NG.

Appl Environ Microbiol. 2016 Jun 30;82(14):4453. doi: 10.1128/AEM.01390-16. Print 2016 Jul 15. No abstract available.

10.

Evasion and interference: intracellular pathogens modulate caspase-dependent inflammatory responses.

Stewart MK, Cookson BT.

Nat Rev Microbiol. 2016 Jun;14(6):346-59. doi: 10.1038/nrmicro.2016.50. Epub 2016 May 13. Review.

PMID:
27174147
11.

A Year of Infection in the Intensive Care Unit: Prospective Whole Genome Sequencing of Bacterial Clinical Isolates Reveals Cryptic Transmissions and Novel Microbiota.

Roach DJ, Burton JN, Lee C, Stackhouse B, Butler-Wu SM, Cookson BT, Shendure J, Salipante SJ.

PLoS Genet. 2015 Jul 31;11(7):e1005413. doi: 10.1371/journal.pgen.1005413. eCollection 2015 Jul. Erratum in: PLoS Genet. 2017 Apr 14;13(4):e1006724.

12.

Bartonella quintana Aortitis in a Man with AIDS, Diagnosed by Needle Biopsy and 16S rRNA Gene Amplification.

Lee SA, Plett SK, Luetkemeyer AF, Borgo GM, Ohliger MA, Conrad MB, Cookson BT, Sengupta DJ, Koehler JE.

J Clin Microbiol. 2015 Aug;53(8):2773-6. doi: 10.1128/JCM.02888-14. Epub 2015 Jun 10.

13.

Application of whole-genome sequencing for bacterial strain typing in molecular epidemiology.

Salipante SJ, SenGupta DJ, Cummings LA, Land TA, Hoogestraat DR, Cookson BT.

J Clin Microbiol. 2015 Apr;53(4):1072-9. doi: 10.1128/JCM.03385-14. Epub 2015 Jan 28.

14.

Characterization of a multidrug-resistant, novel Bacteroides genomospecies.

Salipante SJ, Kalapila A, Pottinger PS, Hoogestraat DR, Cummings L, Duchin JS, Sengupta DJ, Pergam SA, Cookson BT, Butler-Wu SM.

Emerg Infect Dis. 2015 Jan;21(1):95-8. doi: 10.3201/eid2101.140662.

15.

Large-scale genomic sequencing of extraintestinal pathogenic Escherichia coli strains.

Salipante SJ, Roach DJ, Kitzman JO, Snyder MW, Stackhouse B, Butler-Wu SM, Lee C, Cookson BT, Shendure J.

Genome Res. 2015 Jan;25(1):119-28. doi: 10.1101/gr.180190.114. Epub 2014 Nov 4.

16.

Temporal and anatomical host resistance to chronic Salmonella infection is quantitatively dictated by Nramp1 and influenced by host genetic background.

Loomis WP, Johnson ML, Brasfield A, Blanc MP, Yi J, Miller SI, Cookson BT, Hajjar AM.

PLoS One. 2014 Oct 28;9(10):e111763. doi: 10.1371/journal.pone.0111763. eCollection 2014. Erratum in: PLoS One. 2015;10(1):e0117648.

17.

Mutually repressing repressor functions and multi-layered cellular heterogeneity regulate the bistable Salmonella fliC census.

Stewart MK, Cookson BT.

Mol Microbiol. 2014 Dec;94(6):1272-84. doi: 10.1111/mmi.12828. Epub 2014 Oct 31.

18.

Performance comparison of Illumina and ion torrent next-generation sequencing platforms for 16S rRNA-based bacterial community profiling.

Salipante SJ, Kawashima T, Rosenthal C, Hoogestraat DR, Cummings LA, Sengupta DJ, Harkins TT, Cookson BT, Hoffman NG.

Appl Environ Microbiol. 2014 Dec;80(24):7583-91. doi: 10.1128/AEM.02206-14. Epub 2014 Sep 26. Erratum in: Appl Environ Microbiol. 2016 Jul 15;82(14):4453.

19.

Whole genome sequencing indicates Corynebacterium jeikeium comprises 4 separate genomospecies and identifies a dominant genomospecies among clinical isolates.

Salipante SJ, Sengupta DJ, Cummings LA, Robinson A, Kurosawa K, Hoogestraat DR, Cookson BT.

Int J Med Microbiol. 2014 Nov;304(8):1001-10. doi: 10.1016/j.ijmm.2014.07.003. Epub 2014 Jul 25.

20.

Whole-genome sequencing for high-resolution investigation of methicillin-resistant Staphylococcus aureus epidemiology and genome plasticity.

SenGupta DJ, Cummings LA, Hoogestraat DR, Butler-Wu SM, Shendure J, Cookson BT, Salipante SJ.

J Clin Microbiol. 2014 Aug;52(8):2787-96. doi: 10.1128/JCM.00759-14. Epub 2014 May 21.

21.

Coinfection of Fusobacterium nucleatum and Actinomyces israelii in mastoiditis diagnosed by next-generation DNA sequencing.

Salipante SJ, Hoogestraat DR, Abbott AN, SenGupta DJ, Cummings LA, Butler-Wu SM, Stephens K, Cookson BT, Hoffman NG.

J Clin Microbiol. 2014 May;52(5):1789-92. doi: 10.1128/JCM.03133-13. Epub 2014 Feb 26.

22.

Burning down the house: cellular actions during pyroptosis.

LaRock CN, Cookson BT.

PLoS Pathog. 2013;9(12):e1003793. doi: 10.1371/journal.ppat.1003793. Epub 2013 Dec 19. Review. No abstract available.

23.

Molecular diagnosis of Actinomadura madurae infection by 16S rRNA deep sequencing.

Salipante SJ, Sengupta DJ, Hoogestraat DR, Cummings LA, Bryant BH, Natividad C, Thielges S, Monsaas PW, Chau M, Barbee LA, Rosenthal C, Cookson BT, Hoffman NG.

J Clin Microbiol. 2013 Dec;51(12):4262-5. doi: 10.1128/JCM.02227-13. Epub 2013 Oct 9.

24.

Predictive diagnostics for Escherichia coli infections based on the clonal association of antimicrobial resistance and clinical outcome.

Tchesnokova V, Billig M, Chattopadhyay S, Linardopoulou E, Aprikian P, Roberts PL, Skrivankova V, Johnston B, Gileva A, Igusheva I, Toland A, Riddell K, Rogers P, Qin X, Butler-Wu S, Cookson BT, Fang FC, Kahl B, Price LB, Weissman SJ, Limaye A, Scholes D, Johnson JR, Sokurenko EV.

J Clin Microbiol. 2013 Sep;51(9):2991-9. doi: 10.1128/JCM.00984-13. Epub 2013 Jul 10.

25.

Rapid 16S rRNA next-generation sequencing of polymicrobial clinical samples for diagnosis of complex bacterial infections.

Salipante SJ, Sengupta DJ, Rosenthal C, Costa G, Spangler J, Sims EH, Jacobs MA, Miller SI, Hoogestraat DR, Cookson BT, McCoy C, Matsen FA, Shendure J, Lee CC, Harkins TT, Hoffman NG.

PLoS One. 2013 May 29;8(5):e65226. doi: 10.1371/journal.pone.0065226. Print 2013.

26.

Reply to "Anaerobic thioglycolate broth culture for recovery of propionibacterium acnes from shoulder tissue and fluid specimens".

Butler-Wu SM, Cookson BT.

J Clin Microbiol. 2013 Feb;51(2):733. doi: 10.1128/JCM.02761-12. No abstract available.

27.

Abrupt emergence of a single dominant multidrug-resistant strain of Escherichia coli.

Johnson JR, Tchesnokova V, Johnston B, Clabots C, Roberts PL, Billig M, Riddell K, Rogers P, Qin X, Butler-Wu S, Price LB, Aziz M, Nicolas-Chanoine MH, Debroy C, Robicsek A, Hansen G, Urban C, Platell J, Trott DJ, Zhanel G, Weissman SJ, Cookson BT, Fang FC, Limaye AP, Scholes D, Chattopadhyay S, Hooper DC, Sokurenko EV.

J Infect Dis. 2013 Mar 15;207(6):919-28. doi: 10.1093/infdis/jis933. Epub 2013 Jan 3.

28.

The Yersinia virulence effector YopM binds caspase-1 to arrest inflammasome assembly and processing.

LaRock CN, Cookson BT.

Cell Host Microbe. 2012 Dec 13;12(6):799-805. doi: 10.1016/j.chom.2012.10.020.

29.

Non-genetic diversity shapes infectious capacity and host resistance.

Stewart MK, Cookson BT.

Trends Microbiol. 2012 Oct;20(10):461-6. doi: 10.1016/j.tim.2012.07.003. Epub 2012 Aug 10. Review.

30.

Membrane vesicle release in bacteria, eukaryotes, and archaea: a conserved yet underappreciated aspect of microbial life.

Deatherage BL, Cookson BT.

Infect Immun. 2012 Jun;80(6):1948-57. doi: 10.1128/IAI.06014-11. Epub 2012 Mar 12. Review.

31.

Real-time quantitative reverse transcription PCR for monitoring of blood-stage Plasmodium falciparum infections in malaria human challenge trials.

Murphy SC, Prentice JL, Williamson K, Wallis CK, Fang FC, Fried M, Pinzon C, Wang R, Talley AK, Kappe SH, Duffy PE, Cookson BT.

Am J Trop Med Hyg. 2012 Mar;86(3):383-94. doi: 10.4269/ajtmh.2012.10-0658.

32.

High-resolution two-locus clonal typing of extraintestinal pathogenic Escherichia coli.

Weissman SJ, Johnson JR, Tchesnokova V, Billig M, Dykhuizen D, Riddell K, Rogers P, Qin X, Butler-Wu S, Cookson BT, Fang FC, Scholes D, Chattopadhyay S, Sokurenko E.

Appl Environ Microbiol. 2012 Mar;78(5):1353-60. doi: 10.1128/AEM.06663-11. Epub 2012 Jan 6.

33.

Molecular diagnosis of subcutaneous Pythium insidiosum infection by use of PCR screening and DNA sequencing.

Salipante SJ, Hoogestraat DR, SenGupta DJ, Murphey D, Panayides K, Hamilton E, Castañeda-Sánchez I, Kennedy J, Monsaas PW, Mendoza L, Stephens K, Dunn JJ, Cookson BT.

J Clin Microbiol. 2012 Apr;50(4):1480-3. doi: 10.1128/JCM.06126-11. Epub 2012 Jan 11.

34.

Regulation of phenotypic heterogeneity permits Salmonella evasion of the host caspase-1 inflammatory response.

Stewart MK, Cummings LA, Johnson ML, Berezow AB, Cookson BT.

Proc Natl Acad Sci U S A. 2011 Dec 20;108(51):20742-7. doi: 10.1073/pnas.1108963108. Epub 2011 Dec 5.

35.

Coordinated host responses during pyroptosis: caspase-1-dependent lysosome exocytosis and inflammatory cytokine maturation.

Bergsbaken T, Fink SL, den Hartigh AB, Loomis WP, Cookson BT.

J Immunol. 2011 Sep 1;187(5):2748-54. doi: 10.4049/jimmunol.1100477. Epub 2011 Jul 29.

36.

Optimization of periprosthetic culture for diagnosis of Propionibacterium acnes prosthetic joint infection.

Butler-Wu SM, Burns EM, Pottinger PS, Magaret AS, Rakeman JL, Matsen FA 3rd, Cookson BT.

J Clin Microbiol. 2011 Jul;49(7):2490-5. doi: 10.1128/JCM.00450-11. Epub 2011 May 4.

37.

Molecular diagnosis of cystoisosporiasis using extended-range PCR screening.

Murphy SC, Hoogestraat DR, Sengupta DJ, Prentice J, Chakrapani A, Cookson BT.

J Mol Diagn. 2011 May;13(3):359-62. doi: 10.1016/j.jmoldx.2011.01.007. Epub 2011 Mar 31.

38.

Ureaplasma urealyticum continuous ambulatory peritoneal dialysis-associated peritonitis diagnosed by 16S rRNA gene PCR.

Yager JE, Ford ES, Boas ZP, Haseley LA, Cookson BT, Sengupta DJ, Fang FC, Gottlieb GS.

J Clin Microbiol. 2010 Nov;48(11):4310-2. doi: 10.1128/JCM.01045-10. Epub 2010 Aug 25.

39.

Humanized nonobese diabetic-scid IL2rgammanull mice are susceptible to lethal Salmonella Typhi infection.

Libby SJ, Brehm MA, Greiner DL, Shultz LD, McClelland M, Smith KD, Cookson BT, Karlinsey JE, Kinkel TL, Porwollik S, Canals R, Cummings LA, Fang FC.

Proc Natl Acad Sci U S A. 2010 Aug 31;107(35):15589-94. doi: 10.1073/pnas.1005566107. Epub 2010 Aug 16.

40.

Quantification of green fluorescent protein in cellular supernatant by capillary electrophoresis with laser-induced fluorescence detection for measurement of cell death.

Swearingen KE, Loomis WP, Kehimkar B, Cookson BT, Dovichi NJ.

Talanta. 2010 May 15;81(3):948-53. doi: 10.1016/j.talanta.2010.01.041. Epub 2010 Jan 28.

41.

SeqSharp: A general approach for improving cycle-sequencing that facilitates a robust one-step combined amplification and sequencing method.

SenGupta DJ, Cookson BT.

J Mol Diagn. 2010 May;12(3):272-7. doi: 10.2353/jmoldx.2010.090134. Epub 2010 Mar 4.

42.

Proteomic profiling of lipopolysaccharide-activated macrophages by isotope coded affinity tagging.

Swearingen KE, Loomis WP, Zheng M, Cookson BT, Dovichi NJ.

J Proteome Res. 2010 May 7;9(5):2412-21. doi: 10.1021/pr901124u.

43.

Disseminated community-acquired USA300 methicillin-resistant Staphylococcus aureus pyomyositis and septic pulmonary emboli in an immunocompetent adult.

Woodward JF, Sengupta DJ, Cookson BT, Park JO, Dellinger EP.

Surg Infect (Larchmt). 2010 Feb;11(1):59-63. doi: 10.1089/sur.2009.015.

PMID:
19888867
44.

Innate immune response during Yersinia infection: critical modulation of cell death mechanisms through phagocyte activation.

Bergsbaken T, Cookson BT.

J Leukoc Biol. 2009 Nov;86(5):1153-8. doi: 10.1189/jlb.0309146. Epub 2009 Sep 4. Review.

45.

Adaptive Immune Responses during Salmonella Infection.

Cummings LA, Deatherage BL, Cookson BT.

EcoSal Plus. 2009 Aug;3(2). doi: 10.1128/ecosalplus.8.8.11.

PMID:
26443770
46.

Biogenesis of bacterial membrane vesicles.

Deatherage BL, Lara JC, Bergsbaken T, Rassoulian Barrett SL, Lara S, Cookson BT.

Mol Microbiol. 2009 Jun;72(6):1395-407. doi: 10.1111/j.1365-2958.2009.06731.x. Epub 2009 May 8.

47.

Pyroptosis: host cell death and inflammation.

Bergsbaken T, Fink SL, Cookson BT.

Nat Rev Microbiol. 2009 Feb;7(2):99-109. doi: 10.1038/nrmicro2070. Review.

48.

Isolation of Bordetella avium and novel Bordetella strain from patients with respiratory disease.

Harrington AT, Castellanos JA, Ziedalski TM, Clarridge JE 3rd, Cookson BT.

Emerg Infect Dis. 2009 Jan;15(1):72-4. doi: 10.3201/eid1501.071677.

49.

Diagnosis of neurocysticercosis by detection of Taenia solium DNA using a global DNA screening platform.

Harrington AT, Creutzfeldt CJ, Sengupta DJ, Hoogestraat DR, Zunt JR, Cookson BT.

Clin Infect Dis. 2009 Jan 1;48(1):86-90. doi: 10.1086/594128.

50.

Systematic assessment of culture review as a tool to assess errors in the clinical microbiology laboratory.

Goodyear N, Ulness BK, Prentice JL, Cookson BT, Limaye AP.

Arch Pathol Lab Med. 2008 Nov;132(11):1792-5. doi: 10.1043/1543-2165-132.11.1792.

PMID:
18976017

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