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Comprehensive evaluation of complex polymicrobial specimens using next generation sequencing and standard microbiological culture.

Cummings LA, Hoogestraat DR, Rassoulian-Barrett SL, Rosenthal CA, Salipante SJ, Cookson BT, Hoffman NG.

Sci Rep. 2020 Mar 25;10(1):5446. doi: 10.1038/s41598-020-62424-x.


A behaviour change package to prevent hand dermatitis in nurses working in the National Health Service: results of a cluster randomized controlled trial.

Madan I, Parsons V, Ntani G, Coggon D, Wright A, English J, McCrone P, Smedley J, Rushton L, Murphy C, Cookson B, Williams HC.

Br J Dermatol. 2020 Jan 27. doi: 10.1111/bjd.18862. [Epub ahead of print]


Back Pain in a 23-Year-Old Male With X-Linked Chronic Granulomatous Disease.

Sabo MC, Blain M, McCulloch D, Glasgow HL, Sengupta DJ, Le T, Cookson BT, Pottinger PS, Liles WC, Graham SM.

Open Forum Infect Dis. 2019 Oct 18;6(11):ofz449. doi: 10.1093/ofid/ofz449. eCollection 2019 Nov.


International Spread of Multidrug-Resistant Campylobacter coli in Men who have Sex with Men in Washington State and Quebec, 2015-2018.

Greninger AL, Addetia A, Starr K, Cybulski RJ, Stewart MK, Salipante SJ, Bryan AB, Cookson B, Gaudreau C, Bekal S, Fang FC.

Clin Infect Dis. 2019 Oct 29. pii: ciz1060. doi: 10.1093/cid/ciz1060. [Epub ahead of print]


A behaviour change package to prevent hand dermatitis in nurses working in health care: the SCIN cluster RCT.

Madan I, Parsons V, Ntani G, Wright A, English J, Coggon D, McCrone P, Smedley J, Rushton L, Murphy C, Cookson B, Lavender T, Williams H.

Health Technol Assess. 2019 Oct;23(58):1-92. doi: 10.3310/hta23580.


Improved Species-Level Clinical Identification of Enterobacteriaceae through Broad-Range dnaJ PCR and Sequencing.

McLean K, Rosenthal CA, Sengupta D, Owens J, Cookson BT, Hoffman NG, Salipante SJ.

J Clin Microbiol. 2019 Oct 23;57(11). pii: e00986-19. doi: 10.1128/JCM.00986-19. Print 2019 Nov.


Working party guidance on the control of multi-resistant acinetobacter outbreaks.

Cookson B.

J Hosp Infect. 2019 Oct;103(2):174. doi: 10.1016/j.jhin.2019.05.012. Epub 2019 May 29. No abstract available.


The signaling adaptor BCAP inhibits NLRP3 and NLRC4 inflammasome activation in macrophages through interactions with Flightless-1.

Carpentier SJ, Ni M, Duggan JM, James RG, Cookson BT, Hamerman JA.

Sci Signal. 2019 May 14;12(581). pii: eaau0615. doi: 10.1126/scisignal.aau0615.


Diverse small molecules prevent macrophage lysis during pyroptosis.

Loomis WP, den Hartigh AB, Cookson BT, Fink SL.

Cell Death Dis. 2019 Apr 11;10(4):326. doi: 10.1038/s41419-019-1559-4.


ESCMID generic competencies in antimicrobial prescribing and stewardship: towards a European consensus.

Dyar OJ, Beović B, Pulcini C, Tacconelli E, Hulscher M, Cookson B; ESCMID generic competencies working group.

Clin Microbiol Infect. 2019 Jan;25(1):13-19. doi: 10.1016/j.cmi.2018.09.022. Epub 2018 Nov 8.


Antimicrobial consumption and impact of antimicrobial stewardship programmes in long-term care facilities.

Falcone M, Paul M, Yahav D, Orlando G, Tiseo G, Prendki V, Güerri-Fernández R, Gavazzi G, Mutters NT, Cookson B, Tinelli Marco M; Study Group for Infections in the Elderly (ESGIE).

Clin Microbiol Infect. 2019 May;25(5):562-569. doi: 10.1016/j.cmi.2018.07.028. Epub 2018 Aug 2.


Infection control bundles in intensive care: an international cross-sectional survey in low- and middle-income countries.

Alp E, Cookson B, Erdem H, Rello J; Survey Group.

J Hosp Infect. 2019 Mar;101(3):248-256. doi: 10.1016/j.jhin.2018.07.022. Epub 2018 Jul 21.


Variability in contact precautions to control the nosocomial spread of multi-drug resistant organisms in the endemic setting: a multinational cross-sectional survey.

Gysin DV, Cookson B, Saenz H, Dettenkofer M, Widmer AF; ESCMID Study Group for Nosocomial Infections (ESGNI).

Antimicrob Resist Infect Control. 2018 Jul 9;7:81. doi: 10.1186/s13756-018-0366-5. eCollection 2018.


Clinical Impact of a Multiplex Gastrointestinal Polymerase Chain Reaction Panel in Patients With Acute Gastroenteritis.

Cybulski RJ Jr, Bateman AC, Bourassa L, Bryan A, Beail B, Matsumoto J, Cookson BT, Fang FC.

Clin Infect Dis. 2018 Nov 13;67(11):1688-1696. doi: 10.1093/cid/ciy357.


Endorsing Reporting Guidelines: the Journal of Infection Prevention helps show the way!

Stone S, Cookson B.

J Infect Prev. 2016 Nov;17(6):264-266. doi: 10.1177/1757177416671797. Epub 2016 Oct 19. No abstract available.


Correction: A Year of Infection in the Intensive Care Unit: Prospective Whole Genome Sequencing of Bacterial Clinical Isolates Reveals Cryptic Transmissions and Novel Microbiota.

Roach DJ, Burton JN, Lee C, Stackhouse B, Butler-Wu SM, Cookson BT, Shendure J, Salipante SJ.

PLoS Genet. 2017 Apr 14;13(4):e1006724. doi: 10.1371/journal.pgen.1006724. eCollection 2017 Apr.


Clinical Next Generation Sequencing Outperforms Standard Microbiological Culture for Characterizing Polymicrobial Samples.

Cummings LA, Kurosawa K, Hoogestraat DR, SenGupta DJ, Candra F, Doyle M, Thielges S, Land TA, Rosenthal CA, Hoffman NG, Salipante SJ, Cookson BT.

Clin Chem. 2016 Nov;62(11):1465-1473. Epub 2016 Sep 13.


Endorsing reporting guidelines: Infection control literature gets ahead of the game.

Stone SP, Cookson BD.

Am J Infect Control. 2016 Dec 1;44(12):1446-1448. doi: 10.1016/j.ajic.2016.06.038. Epub 2016 Oct 21. No abstract available.


The projected effectiveness of Clostridium difficile vaccination as part of an integrated infection control strategy.

van Kleef E, Deeny SR, Jit M, Cookson B, Goldenberg SD, Edmunds WJ, Robotham JV.

Vaccine. 2016 Nov 4;34(46):5562-5570. doi: 10.1016/j.vaccine.2016.09.046. Epub 2016 Oct 7.


Staffing for infectious diseases, clinical microbiology and infection control in hospitals in 2015: results of an ESCMID member survey.

Dickstein Y, Nir-Paz R, Pulcini C, Cookson B, Beović B, Tacconelli E, Nathwani D, Vatcheva-Dobrevska R, Rodríguez-Baño J, Hell M, Saenz H, Leibovici L, Paul M.

Clin Microbiol Infect. 2016 Sep;22(9):812.e9-812.e17. doi: 10.1016/j.cmi.2016.06.014. Epub 2016 Jun 29.


Erratum for Salipante et al., Performance Comparison of Illumina and Ion Torrent Next-Generation Sequencing Platforms for 16S rRNA-Based Bacterial Community Profiling.

Salipante SJ, Kawashima T, Rosenthal C, Hoogestraat DR, Cummings LA, Sengupta DJ, Harkins TT, Cookson BT, Hoffman NG.

Appl Environ Microbiol. 2016 Jun 30;82(14):4453. doi: 10.1128/AEM.01390-16. Print 2016 Jul 15. No abstract available.


Key priorities in the prevention and control of healthcare-associated infection: a survey of European and other international infection prevention experts.

Dettenkofer M, Humphreys H, Saenz H, Carlet J, Hanberger H, Ruef C, Widmer A, Wolkewitz M, Cookson B.

Infection. 2016 Dec;44(6):719-724. Epub 2016 May 25.


Evasion and interference: intracellular pathogens modulate caspase-dependent inflammatory responses.

Stewart MK, Cookson BT.

Nat Rev Microbiol. 2016 Jun;14(6):346-59. doi: 10.1038/nrmicro.2016.50. Epub 2016 May 13. Review.


A cross-sectional survey of the acceptability of data collection processes for validation of a European point prevalence survey of healthcare-associated infections and antimicrobial use.

Price L, Reilly J, Godwin J, Cairns S, Hopkins S, Cookson B, Malcolm W, Hughes G, Lyytikäinen O, Coignard B, Hansen S.

J Infect Prev. 2016 May;17(3):122-126. doi: 10.1177/1757177416637131. Epub 2016 Mar 8.


A behavioural change package to prevent hand dermatitis in nurses working in the national health service (the SCIN trial): study protocol for a cluster randomised controlled trial.

Madan I, Parsons V, Cookson B, English J, Lavender T, McCrone P, Murphy C, Ntani G, Rushton L, Smedley J, Williams H, Wright A, Coggon D.

Trials. 2016 Mar 17;17(1):145. doi: 10.1186/s13063-016-1255-y.


More Research Is Needed to Quantify Risks, Benefits, and Cost-Effectiveness of Universal Mupirocin Usage.

Deeny SR, Worby CJ, Tosas Auguet O, Cooper BS, Edgeworth J, Cookson B, Robotham JV.

Clin Infect Dis. 2016 May 1;62(9):1193-4. doi: 10.1093/cid/ciw077. Epub 2016 Feb 21. No abstract available.


STROBE-AMS: recommendations to optimise reporting of epidemiological studies on antimicrobial resistance and informing improvement in antimicrobial stewardship.

Tacconelli E, Cataldo MA, Paul M, Leibovici L, Kluytmans J, Schröder W, Foschi F, De Angelis G, De Waure C, Cadeddu C, Mutters NT, Gastmeier P, Cookson B.

BMJ Open. 2016 Feb 19;6(2):e010134. doi: 10.1136/bmjopen-2015-010134. Review.


Cost-effectiveness of national mandatory screening of all admissions to English National Health Service hospitals for meticillin-resistant Staphylococcus aureus: a mathematical modelling study.

Robotham JV, Deeny SR, Fuller C, Hopkins S, Cookson B, Stone S.

Lancet Infect Dis. 2016 Mar;16(3):348-56. doi: 10.1016/S1473-3099(15)00417-X. Epub 2015 Nov 28.


National observational study to evaluate the "cleanyourhands" campaign (NOSEC): a questionnaire based study of national implementation.

Fuller C, Savage J, Cookson B, Hayward A, Cooper B, Duckworth G, Michie S, Jeanes A, Teare L, Charlett A, Stone SP.

Antimicrob Resist Infect Control. 2015 Nov 23;4:52. doi: 10.1186/s13756-015-0077-0. eCollection 2015.


Avian influenza in Australia: a summary of 5 years of wild bird surveillance.

Grillo VL, Arzey KE, Hansbro PM, Hurt AC, Warner S, Bergfeld J, Burgess GW, Cookson B, Dickason CJ, Ferenczi M, Hollingsworth T, Hoque M, Jackson RB, Klaassen M, Kirkland PD, Kung NY, Lisovski S, O'Dea MA, O'Riley K, Roshier D, Skerratt LF, Tracey JP, Wang X, Woods R, Post L.

Aust Vet J. 2015 Nov;93(11):387-93. doi: 10.1111/avj.12379.


Provision and consumption of alcohol-based hand rubs in European hospitals.

Hansen S, Schwab F, Gastmeier P; PROHIBIT study group, Pittet D, Zingg W, Sax H, Gastmeier P, Hansen S, Grundmann H, van Benthem B, van der Kooi T, Dettenkofer M, Martin M, Richet H, Szilágyi E, Központ OE, Heczko PB, Holmes A, Kyratsis Y, Ahmad R, Allegranzi B, Magiorakos A, Cookson B, Wu AW.

Clin Microbiol Infect. 2015 Dec;21(12):1047-51. doi: 10.1016/j.cmi.2015.09.019. Epub 2015 Sep 28. Review.


Impact of mupirocin resistance on the transmission and control of healthcare-associated MRSA.

Deeny SR, Worby CJ, Tosas Auguet O, Cooper BS, Edgeworth J, Cookson B, Robotham JV.

J Antimicrob Chemother. 2015 Dec;70(12):3366-78. doi: 10.1093/jac/dkv249. Epub 2015 Sep 3.


A Year of Infection in the Intensive Care Unit: Prospective Whole Genome Sequencing of Bacterial Clinical Isolates Reveals Cryptic Transmissions and Novel Microbiota.

Roach DJ, Burton JN, Lee C, Stackhouse B, Butler-Wu SM, Cookson BT, Shendure J, Salipante SJ.

PLoS Genet. 2015 Jul 31;11(7):e1005413. doi: 10.1371/journal.pgen.1005413. eCollection 2015 Jul. Erratum in: PLoS Genet. 2017 Apr 14;13(4):e1006724.


Colonisation of dentures by Staphylococcus aureus and MRSA in out-patient and in-patient populations.

Lewis N, Parmar N, Hussain Z, Baker G, Green I, Howlett J, Kearns A, Cookson B, McDonald A, Wilson M, Ready D.

Eur J Clin Microbiol Infect Dis. 2015 Sep;34(9):1823-6. doi: 10.1007/s10096-015-2418-6. Epub 2015 Jun 13.


Bartonella quintana Aortitis in a Man with AIDS, Diagnosed by Needle Biopsy and 16S rRNA Gene Amplification.

Lee SA, Plett SK, Luetkemeyer AF, Borgo GM, Ohliger MA, Conrad MB, Cookson BT, Sengupta DJ, Koehler JE.

J Clin Microbiol. 2015 Aug;53(8):2773-6. doi: 10.1128/JCM.02888-14. Epub 2015 Jun 10.


Harmonizing and supporting infection control training in Europe.

Brusaferro S, Arnoldo L, Cattani G, Fabbro E, Cookson B, Gallagher R, Hartemann P, Holt J, Kalenic S, Popp W, Privitera G, Prikazsky V, Velasco C, Suetens C, Varela Santos C.

J Hosp Infect. 2015 Apr;89(4):351-6. doi: 10.1016/j.jhin.2014.12.005. Epub 2015 Jan 7. Review.


A pilot validation in 10 European Union Member States of a point prevalence survey of healthcare-associated infections and antimicrobial use in acute hospitals in Europe, 2011.

Reilly JS, Price L, Godwin J, Cairns S, Hopkins S, Cookson B, Malcolm W, Hughes G, Lyytikainen O, Coignard B, Hansen S, Suetens C; National Participants in the ECDC pilot validation study.

Euro Surveill. 2015 Feb 26;20(8). pii: 21045.


Participation of elderly adults in randomized controlled trials addressing antibiotic treatment of pneumonia.

Avni T, Shiver-Ofer S, Leibovici L, Tacconelli E, DeAngelis G, Cookson B, Pagani L, Paul M.

J Am Geriatr Soc. 2015 Feb;63(2):233-43. doi: 10.1111/jgs.13250. Review.


Whole-genome sequencing in hierarchy with pulsed-field gel electrophoresis: the utility of this approach to establish possible sources of MRSA cross-transmission.

Moore G, Cookson B, Gordon NC, Jackson R, Kearns A, Singleton J, Smyth D, Wilson AP.

J Hosp Infect. 2015 May;90(1):38-45. doi: 10.1016/j.jhin.2014.12.014. Epub 2015 Jan 13.


Application of whole-genome sequencing for bacterial strain typing in molecular epidemiology.

Salipante SJ, SenGupta DJ, Cummings LA, Land TA, Hoogestraat DR, Cookson BT.

J Clin Microbiol. 2015 Apr;53(4):1072-9. doi: 10.1128/JCM.03385-14. Epub 2015 Jan 28.


Characterization of a multidrug-resistant, novel Bacteroides genomospecies.

Salipante SJ, Kalapila A, Pottinger PS, Hoogestraat DR, Cummings L, Duchin JS, Sengupta DJ, Pergam SA, Cookson BT, Butler-Wu SM.

Emerg Infect Dis. 2015 Jan;21(1):95-8. doi: 10.3201/eid2101.140662.


Training infection control and hospital hygiene professionals in Europe, 2010: agreed core competencies among 33 European countries.

Brusaferro S, Cookson B, Kalenic S, Cooper T, Fabry J, Gallagher R, Hartemann P, Mannerquist K, Popp W, Privitera G, Ruef C, Viale P, Coiz F, Fabbro E, Suetens C, Varela Santos C; National representatives of the Training in Infection Control in Europe (TRICE) project.

Euro Surveill. 2014 Dec 11;19(49). pii: 20985.


Excess length of stay and mortality due to Clostridium difficile infection: a multi-state modelling approach.

van Kleef E, Green N, Goldenberg SD, Robotham JV, Cookson B, Jit M, Edmunds WJ, Deeny SR.

J Hosp Infect. 2014 Dec;88(4):213-7. doi: 10.1016/j.jhin.2014.08.008. Epub 2014 Sep 18.


Large-scale genomic sequencing of extraintestinal pathogenic Escherichia coli strains.

Salipante SJ, Roach DJ, Kitzman JO, Snyder MW, Stackhouse B, Butler-Wu SM, Lee C, Cookson BT, Shendure J.

Genome Res. 2015 Jan;25(1):119-28. doi: 10.1101/gr.180190.114. Epub 2014 Nov 4.


Temporal and anatomical host resistance to chronic Salmonella infection is quantitatively dictated by Nramp1 and influenced by host genetic background.

Loomis WP, Johnson ML, Brasfield A, Blanc MP, Yi J, Miller SI, Cookson BT, Hajjar AM.

PLoS One. 2014 Oct 28;9(10):e111763. doi: 10.1371/journal.pone.0111763. eCollection 2014. Erratum in: PLoS One. 2015;10(1):e0117648.


Mutually repressing repressor functions and multi-layered cellular heterogeneity regulate the bistable Salmonella fliC census.

Stewart MK, Cookson BT.

Mol Microbiol. 2014 Dec;94(6):1272-84. doi: 10.1111/mmi.12828. Epub 2014 Oct 31.


Performance comparison of Illumina and ion torrent next-generation sequencing platforms for 16S rRNA-based bacterial community profiling.

Salipante SJ, Kawashima T, Rosenthal C, Hoogestraat DR, Cummings LA, Sengupta DJ, Harkins TT, Cookson BT, Hoffman NG.

Appl Environ Microbiol. 2014 Dec;80(24):7583-91. doi: 10.1128/AEM.02206-14. Epub 2014 Sep 26. Erratum in: Appl Environ Microbiol. 2016 Jul 15;82(14):4453.


Developing the first national antimicrobial prescribing and stewardship competences.

Ashiru-Oredope D, Cookson B, Fry C; Advisory Committee on Antimicrobial Resistance and Healthcare Associated Infection Professional Education Subgroup.

J Antimicrob Chemother. 2014 Nov;69(11):2886-8. doi: 10.1093/jac/dku350. Epub 2014 Sep 11. Review.


Survey of neonatal unit outbreaks in North London: identifying causes and risk factors.

Williams K, Hopkins S, Turbitt D, Seng C, Cookson B, Patel BC, Manuel RJ.

J Hosp Infect. 2014 Nov;88(3):149-55. doi: 10.1016/j.jhin.2014.06.012. Epub 2014 Jul 19.


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