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Items: 1 to 50 of 453

1.

The Whole-Genome Sequence of the Coral Acropora millepora.

Ying H, Hayward DC, Cooke I, Wang W, Moya A, Siemering KR, Sprungala S, Ball EE, Forêt S, Miller DJ.

Genome Biol Evol. 2019 May 1;11(5):1374-1379. doi: 10.1093/gbe/evz077. No abstract available.

PMID:
31059562
2.

Comparative Proteomic Analysis of Slime from the Striped Pyjama Squid, Sepioloidea lineolata, and the Southern Bottletail Squid, Sepiadarium austrinum (Cephalopoda: Sepiadariidae).

Caruana NJ, Strugnell JM, Faou P, Finn J, Cooke IR.

J Proteome Res. 2019 Mar 1;18(3):890-899. doi: 10.1021/acs.jproteome.8b00569. Epub 2019 Jan 25.

PMID:
30628786
3.

The evolution and origin of tetrodotoxin acquisition in the blue-ringed octopus (genus Hapalochlaena).

Whitelaw BL, Cooke IR, Finn J, Zenger K, Strugnell JM.

Aquat Toxicol. 2019 Jan;206:114-122. doi: 10.1016/j.aquatox.2018.10.012. Epub 2018 Oct 24. Review.

PMID:
30472480
4.

Comparative genomics reveals the distinct evolutionary trajectories of the robust and complex coral lineages.

Ying H, Cooke I, Sprungala S, Wang W, Hayward DC, Tang Y, Huttley G, Ball EE, Forêt S, Miller DJ.

Genome Biol. 2018 Nov 2;19(1):175. doi: 10.1186/s13059-018-1552-8.

5.

Erratum: Publisher Correction: Symbiodinium genomes reveal adaptive evolution of functions related to coral-dinoflagellate symbiosis.

Liu H, Stephens TG, González-Pech RA, Beltran VH, Lapeyre B, Bongaerts P, Cooke I, Aranda M, Bourne DG, Forêt S, Miller DJ, van Oppen MJH, Voolstra CR, Ragan MA, Chan CX.

Commun Biol. 2018 Aug 23;1:126. doi: 10.1038/s42003-018-0117-4. eCollection 2018.

6.

Symbiodinium genomes reveal adaptive evolution of functions related to coral-dinoflagellate symbiosis.

Liu H, Stephens TG, González-Pech RA, Beltran VH, Lapeyre B, Bongaerts P, Cooke I, Aranda M, Bourne DG, Forêt S, Miller DJ, van Oppen MJH, Voolstra CR, Ragan MA, Chan CX.

Commun Biol. 2018 Jul 17;1:95. doi: 10.1038/s42003-018-0098-3. eCollection 2018. Erratum in: Commun Biol. 2018 Aug 23;1:126.

7.

Shotgun Proteomics Analysis of Saliva and Salivary Gland Tissue from the Common Octopus Octopus vulgaris.

Fingerhut LCHW, Strugnell JM, Faou P, Labiaga ÁR, Zhang J, Cooke IR.

J Proteome Res. 2018 Nov 2;17(11):3866-3876. doi: 10.1021/acs.jproteome.8b00525. Epub 2018 Sep 27.

PMID:
30220204
8.

Uranium isotope evidence for two episodes of deoxygenation during Oceanic Anoxic Event 2.

Clarkson MO, Stirling CH, Jenkyns HC, Dickson AJ, Porcelli D, Moy CM, Pogge von Strandmann PAE, Cooke IR, Lenton TM.

Proc Natl Acad Sci U S A. 2018 Mar 20;115(12):2918-2923. doi: 10.1073/pnas.1715278115. Epub 2018 Mar 5.

9.

Liver proteome response of pre-harvest Atlantic salmon following exposure to elevated temperature.

Nuez-Ortín WG, Carter CG, Nichols PD, Cooke IR, Wilson R.

BMC Genomics. 2018 Feb 12;19(1):133. doi: 10.1186/s12864-018-4517-0.

10.

Kinetic Monte Carlo simulations of water ice porosity: extrapolations of deposition parameters from the laboratory to interstellar space.

Clements AR, Berk B, Cooke IR, Garrod RT.

Phys Chem Chem Phys. 2018 Feb 21;20(8):5553-5568. doi: 10.1039/c7cp05966c.

PMID:
29387847
11.

Discovery and Longitudinal Evaluation of Candidate Biomarkers for Ischaemic Stroke by Mass Spectrometry-Based Proteomics.

Dagonnier M, Cooke IR, Faou P, Sidon TK, Dewey HM, Donnan GA, Howells DW.

Biomark Insights. 2017 Dec 20;12:1177271917749216. doi: 10.1177/1177271917749216. eCollection 2017.

12.

Mice, vaccine, and human arteriosclerosis.

Cooke I.

Eur Heart J. 2017 Nov 14;38(43):3194. doi: 10.1093/eurheartj/ehx613. No abstract available.

PMID:
29145664
13.

The International Glossary on Infertility and Fertility Care, 2017.

Zegers-Hochschild F, Adamson GD, Dyer S, Racowsky C, de Mouzon J, Sokol R, Rienzi L, Sunde A, Schmidt L, Cooke ID, Simpson JL, van der Poel S.

Hum Reprod. 2017 Sep 1;32(9):1786-1801. doi: 10.1093/humrep/dex234.

14.

Establishing a distributed national research infrastructure providing bioinformatics support to life science researchers in Australia.

Schneider MV, Griffin PC, Tyagi S, Flannery M, Dayalan S, Gladman S, Watson-Haigh N, Bayer PE, Charleston M, Cooke I, Cook R, Edwards RJ, Edwards D, Gorse D, McConville M, Powell D, Wilkins MR, Lonie A.

Brief Bioinform. 2019 Mar 22;20(2):384-389. doi: 10.1093/bib/bbx071.

15.

An Accessible Proteogenomics Informatics Resource for Cancer Researchers.

Chambers MC, Jagtap PD, Johnson JE, McGowan T, Kumar P, Onsongo G, Guerrero CR, Barsnes H, Vaudel M, Martens L, Grüning B, Cooke IR, Heydarian M, Reddy KL, Griffin TJ.

Cancer Res. 2017 Nov 1;77(21):e43-e46. doi: 10.1158/0008-5472.CAN-17-0331.

16.

The International Glossary on Infertility and Fertility Care, 2017.

Zegers-Hochschild F, Adamson GD, Dyer S, Racowsky C, de Mouzon J, Sokol R, Rienzi L, Sunde A, Schmidt L, Cooke ID, Simpson JL, van der Poel S.

Fertil Steril. 2017 Sep;108(3):393-406. doi: 10.1016/j.fertnstert.2017.06.005. Epub 2017 Jul 29.

17.

Consensus statement: Supporting Safer Conception and Pregnancy For Men And Women Living with and Affected by HIV.

Matthews LT, Beyeza-Kashesya J, Cooke I, Davies N, Heffron R, Kaida A, Kinuthia J, Mmeje O, Semprini AE, Weber S.

AIDS Behav. 2018 Jun;22(6):1713-1724. doi: 10.1007/s10461-017-1777-7.

18.

A novel ex vivo immunoproteomic approach characterising Fasciola hepatica tegumental antigens identified using immune antibody from resistant sheep.

Cameron TC, Cooke I, Faou P, Toet H, Piedrafita D, Young N, Rathinasamy V, Beddoe T, Anderson G, Dempster R, Spithill TW.

Int J Parasitol. 2017 Aug;47(9):555-567. doi: 10.1016/j.ijpara.2017.02.004. Epub 2017 Apr 26.

PMID:
28455238
19.

Epipodial Tentacle Gene Expression and Predetermined Resilience to Summer Mortality in the Commercially Important Greenlip Abalone, Haliotis laevigata.

Shiel BP, Hall NE, Cooke IR, Robinson NA, Strugnell JM.

Mar Biotechnol (NY). 2017 Apr;19(2):191-205. doi: 10.1007/s10126-017-9742-z. Epub 2017 Mar 27.

20.

Triploid Atlantic salmon shows similar performance, fatty acid composition and proteome response to diploids during early freshwater rearing.

Nuez-Ortín WG, Carter CG, Wilson R, Cooke IR, Amoroso G, Cobcroft JM, Nichols PD.

Comp Biochem Physiol Part D Genomics Proteomics. 2017 Jun;22:67-77. doi: 10.1016/j.cbd.2017.02.005. Epub 2017 Feb 11.

PMID:
28214702
21.

Analyses of Corallimorpharian Transcriptomes Provide New Perspectives on the Evolution of Calcification in the Scleractinia (Corals).

Lin MF, Moya A, Ying H, Chen CA, Cooke I, Ball EE, Forêt S, Miller DJ.

Genome Biol Evol. 2017 Jan 1;9(1):150-160. doi: 10.1093/gbe/evw297.

22.

Barriers and Facilitators toward HIV Testing and Health Perceptions among African-American Men Who Have Sex with Women at a South Side Chicago Community Health Center: A Pilot Study.

Cooke IJ, Jeremiah RD, Moore NJ, Watson K, Dixon MA, Jordan GL, Murray M, Keeter MK, Hollowell CM, Murphy AB.

Front Public Health. 2017 Jan 3;4:286. doi: 10.3389/fpubh.2016.00286. eCollection 2016.

23.
24.

Context matters: communicating the need for biomarkers for mental illnesses to the general public.

Carew M, Dean B, Bush AI, Cooke I.

Australas Psychiatry. 2016 Oct;24(5):512. doi: 10.1177/1039856216654396. No abstract available.

PMID:
27683861
25.
26.

Bladder Pneumatosis From a Catastrophic Vascular Event.

Cooke IJ, Okorji LM, Matulewicz RS, Oberlin DT, Helfand BT.

Urol Case Rep. 2016 Aug 4;8:58-60. doi: 10.1016/j.eucr.2016.07.002. eCollection 2016 Sep.

27.

A combined proteomic and transcriptomic analysis of slime secreted by the southern bottletail squid, Sepiadarium austrinum (Cephalopoda).

Caruana NJ, Cooke IR, Faou P, Finn J, Hall NE, Norman M, Pineda SS, Strugnell JM.

J Proteomics. 2016 Oct 4;148:170-82. doi: 10.1016/j.jprot.2016.07.026. Epub 2016 Jul 28.

PMID:
27476034
28.

Combined Transcriptomic and Proteomic Analysis of the Posterior Salivary Gland from the Southern Blue-Ringed Octopus and the Southern Sand Octopus.

Whitelaw BL, Strugnell JM, Faou P, da Fonseca RR, Hall NE, Norman M, Finn J, Cooke IR.

J Proteome Res. 2016 Sep 2;15(9):3284-97. doi: 10.1021/acs.jproteome.6b00452. Epub 2016 Aug 5.

PMID:
27427999
29.

A Pathway Proteomic Profile of Ischemic Stroke Survivors Reveals Innate Immune Dysfunction in Association with Mild Symptoms of Depression - A Pilot Study.

Nguyen VA, Carey LM, Giummarra L, Faou P, Cooke I, Howells DW, Tse T, Macaulay SL, Ma H, Davis SM, Donnan GA, Crewther SG.

Front Neurol. 2016 Jun 14;7:85. doi: 10.3389/fneur.2016.00085. eCollection 2016.

30.

A discussion of key values to inform the design and delivery of services for HIV-affected women and couples attempting pregnancy in resource-constrained settings.

Heffron R, Davies N, Cooke I, Kaida A, Mergler R, van der Poel S, Cohen CR, Mmeje O.

J Int AIDS Soc. 2015 Dec 1;18(Suppl 5):20272. doi: 10.7448/IAS.18.6.20272. eCollection 2015.

31.

Biochemical markers of placental dysfunction in assisted conception.

Joy J, Armstrong L, Ardill J, Mcclure N, Cooke I.

Hum Fertil (Camb). 2015;18(4):282-90. doi: 10.3109/14647273.2015.1083620. Epub 2015 Nov 11.

PMID:
26560488
32.

Effect of Eye Height on Estimated Slopes of Hills.

Bridgeman B, Cooke I.

Perception. 2015;44(7):755-63.

PMID:
26541053
33.

Application of dual tree complex wavelet transform in tandem mass spectrometry.

Murugesan S, Tay DB, Cooke I, Faou P.

Comput Biol Med. 2015 Aug;63:36-41. doi: 10.1016/j.compbiomed.2015.05.002. Epub 2015 May 13.

PMID:
26004826
34.

Methamphetamine acutely inhibits voltage-gated calcium channels but chronically up-regulates L-type channels.

Andres MA, Cooke IM, Bellinger FP, Berry MJ, Zaporteza MM, Rueli RH, Barayuga SM, Chang L.

J Neurochem. 2015 Jul;134(1):56-65. doi: 10.1111/jnc.13104. Epub 2015 Apr 30.

35.

Multi-omic data analysis using Galaxy.

Boekel J, Chilton JM, Cooke IR, Horvatovich PL, Jagtap PD, Käll L, Lehtiö J, Lukasse P, Moerland PD, Griffin TJ.

Nat Biotechnol. 2015 Feb;33(2):137-9. doi: 10.1038/nbt.3134. No abstract available.

PMID:
25658277
36.

A case of euglyacemic diabetic ketoacidosis in a patient with gestational diabetes mellitus.

Graham UM, Cooke IE, McCance DR.

Obstet Med. 2014 Dec;7(4):174-6. doi: 10.1177/1753495X14547558. Epub 2014 Sep 2.

37.

Analysis of menisci formed on cones for single field of view parasite egg microscopy.

Cooke IR, Laing CJ, White LV, Wakes SJ, Sowerby SJ.

J Microsc. 2015 Feb;257(2):133-41. doi: 10.1111/jmi.12192. Epub 2014 Nov 10.

38.

De novo characterisation of the greenlip abalone transcriptome (Haliotis laevigata) with a focus on the heat shock protein 70 (HSP70) family.

Shiel BP, Hall NE, Cooke IR, Robinson NA, Strugnell JM.

Mar Biotechnol (NY). 2015 Feb;17(1):23-32. doi: 10.1007/s10126-014-9591-y. Epub 2014 Jul 31.

PMID:
25079910
39.

Proteogenomic analysis of the Venturia pirina (Pear Scab Fungus) secretome reveals potential effectors.

Cooke IR, Jones D, Bowen JK, Deng C, Faou P, Hall NE, Jayachandran V, Liem M, Taranto AP, Plummer KM, Mathivanan S.

J Proteome Res. 2014 Aug 1;13(8):3635-44. doi: 10.1021/pr500176c. Epub 2014 Jul 9.

PMID:
24965097
40.

The complete mitochondrial genome of Haliotis laevigata (Gastropoda: Haliotidae) using MiSeq and HiSeq sequencing.

Robinson NA, Hall NE, Ross EM, Cooke IR, Shiel BP, Robinson AJ, Strugnell JM.

Mitochondrial DNA A DNA Mapp Seq Anal. 2016;27(1):437-8. doi: 10.3109/19401736.2014.900611. Epub 2014 Mar 24.

PMID:
24660910
41.

The complete mitochondrial genome of the pygmy squid, Idiosepius (Cephalopoda: Decapodiformes): the first representative from the family Idiosepiidae.

Hall NE, Hanzak J, Allcock AL, Cooke IR, Ogura A, Strugnell JM.

Mitochondrial DNA A DNA Mapp Seq Anal. 2016;27(1):5-6. doi: 10.3109/19401736.2013.865180. Epub 2014 Jan 17.

PMID:
24438246
42.

Quantitative particle microscopy in self-metered fluids.

White LV, Cooke IR, Wakes SJ, Sowerby SJ.

J Microsc. 2013 Jun;250(3):159-65. doi: 10.1111/jmi.12031. Epub 2013 Mar 21.

43.

Characterization of a distinct population of circulating human non-adherent endothelial forming cells and their recruitment via intercellular adhesion molecule-3.

Appleby SL, Cockshell MP, Pippal JB, Thompson EJ, Barrett JM, Tooley K, Sen S, Sun WY, Grose R, Nicholson I, Levina V, Cooke I, Talbo G, Lopez AF, Bonder CS.

PLoS One. 2012;7(11):e46996. doi: 10.1371/journal.pone.0046996. Epub 2012 Nov 7.

44.

Flupirtine enhances the anti-hyperalgesic effects of morphine in a rat model of prostate bone metastasis.

Kolosov A, Goodchild CS, Williams ED, Cooke I.

Pain Med. 2012 Nov;13(11):1444-56. doi: 10.1111/j.1526-4637.2012.01502.x. Epub 2012 Oct 18.

PMID:
23078152
45.

Is assisted reproduction associated with abnormal placentation?

Joy J, Gannon C, McClure N, Cooke I.

Pediatr Dev Pathol. 2012 Jul-Aug;15(4):306-14. doi: 10.2350/11-11-1115-OA.1. Epub 2012 May 17.

PMID:
22594307
46.

Fetal habituation in assisted conception.

Joy J, McClure N, Hepper PG, Cooke I.

Early Hum Dev. 2012 Jun;88(6):431-6. doi: 10.1016/j.earlhumdev.2011.10.009. Epub 2011 Nov 21.

PMID:
22100057
47.

Capacitance increases of dissociated tilapia prolactin cells in response to hyposmotic and depolarizing stimuli.

Xu S, Shimahara T, Cooke IM.

Gen Comp Endocrinol. 2011 Aug 1;173(1):38-47. doi: 10.1016/j.ygcen.2011.04.020. Epub 2011 Apr 28.

PMID:
21549709
48.

Intravenous injection of leconotide, an omega conotoxin: synergistic antihyperalgesic effects with morphine in a rat model of bone cancer pain.

Kolosov A, Aurini L, Williams ED, Cooke I, Goodchild CS.

Pain Med. 2011 Jun;12(6):923-41. doi: 10.1111/j.1526-4637.2011.01118.x. Epub 2011 May 3.

PMID:
21539704
49.

International Federation of Fertility Societies Surveillance 2010: preface.

Jones HW Jr, Cooke I, Kempers R, Brinsden P, Saunders D.

Fertil Steril. 2011 Feb;95(2):491. doi: 10.1016/j.fertnstert.2010.08.011.

PMID:
20813358
50.

Studies of synergy between morphine and a novel sodium channel blocker, CNSB002, in rat models of inflammatory and neuropathic pain.

Kolosov A, Goodchild CS, Cooke I.

Pain Med. 2010 Jan;11(1):106-18. doi: 10.1111/j.1526-4637.2009.00768.x.

PMID:
20447294

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