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Accelerated cortical thinning within structural brain networks is associated with irritability in youth.

Jirsaraie RJ, Kaczkurkin AN, Rush S, Piiwia K, Adebimpe A, Bassett DS, Bourque J, Calkins ME, Cieslak M, Ciric R, Cook PA, Davila D, Elliott MA, Leibenluft E, Murtha K, Roalf DR, Rosen AFG, Ruparel K, Shinohara RT, Sotiras A, Wolf DH, Davatzikos C, Satterthwaite TD.

Neuropsychopharmacology. 2019 Dec;44(13):2254-2262. doi: 10.1038/s41386-019-0508-3. Epub 2019 Sep 2.


Longitudinal Mapping of Cortical Thickness Measurements: An Alzheimer's Disease Neuroimaging Initiative-Based Evaluation Study.

Tustison NJ, Holbrook AJ, Avants BB, Roberts JM, Cook PA, Reagh ZM, Duda JT, Stone JR, Gillen DL, Yassa MA; Alzheimer’s Disease Neuroimaging Initiative.

J Alzheimers Dis. 2019;71(1):165-183. doi: 10.3233/JAD-190283.


Longitudinal progression of grey matter atrophy in non-amnestic Alzheimer's disease.

Phillips JS, Da Re F, Irwin DJ, McMillan CT, Vaishnavi SN, Xie SX, Lee EB, Cook PA, Gee JC, Shaw LM, Trojanowski JQ, Wolk DA, Grossman M.

Brain. 2019 Jun 1;142(6):1701-1722. doi: 10.1093/brain/awz091.


Childhood trauma history is linked to abnormal brain connectivity in major depression.

Yu M, Linn KA, Shinohara RT, Oathes DJ, Cook PA, Duprat R, Moore TM, Oquendo MA, Phillips ML, McInnis M, Fava M, Trivedi MH, McGrath P, Parsey R, Weissman MM, Sheline YI.

Proc Natl Acad Sci U S A. 2019 Apr 23;116(17):8582-8590. doi: 10.1073/pnas.1900801116. Epub 2019 Apr 8. Erratum in: Proc Natl Acad Sci U S A. 2019 Jun 25;116(26):13146.


Neurodevelopmental outcomes in individuals with fetal alcohol spectrum disorder (FASD) with and without exposure to neglect: Clinical cohort data from a national FASD diagnostic clinic.

Mukherjee RAS, Cook PA, Norgate SH, Price AD.

Alcohol. 2019 May;76:23-28. doi: 10.1016/j.alcohol.2018.06.002. Epub 2018 Jun 12.


Mitigating head motion artifact in functional connectivity MRI.

Ciric R, Rosen AFG, Erus G, Cieslak M, Adebimpe A, Cook PA, Bassett DS, Davatzikos C, Wolf DH, Satterthwaite TD.

Nat Protoc. 2018 Dec;13(12):2801-2826. doi: 10.1038/s41596-018-0065-y.


Wound botulism caused by Clostridium subterminale after a heroin injection.

Cook PA, Mishler A, Quan D, Parrish-Garcia A.

Infect Dis Rep. 2018 Sep 5;10(2):7654. doi: 10.4081/idr.2018.7654. eCollection 2018 Sep 5.


Linked dimensions of psychopathology and connectivity in functional brain networks.

Xia CH, Ma Z, Ciric R, Gu S, Betzel RF, Kaczkurkin AN, Calkins ME, Cook PA, García de la Garza A, Vandekar SN, Cui Z, Moore TM, Roalf DR, Ruparel K, Wolf DH, Davatzikos C, Gur RC, Gur RE, Shinohara RT, Bassett DS, Satterthwaite TD.

Nat Commun. 2018 Aug 1;9(1):3003. doi: 10.1038/s41467-018-05317-y.


Longitudinal structural gray matter and white matter MRI changes in presymptomatic progranulin mutation carriers.

Olm CA, McMillan CT, Irwin DJ, Van Deerlin VM, Cook PA, Gee JC, Grossman M.

Neuroimage Clin. 2018 May 15;19:497-506. doi: 10.1016/j.nicl.2018.05.017. eCollection 2018.


Statistical harmonization corrects site effects in functional connectivity measurements from multi-site fMRI data.

Yu M, Linn KA, Cook PA, Phillips ML, McInnis M, Fava M, Trivedi MH, Weissman MM, Shinohara RT, Sheline YI.

Hum Brain Mapp. 2018 Nov;39(11):4213-4227. doi: 10.1002/hbm.24241. Epub 2018 Jul 1.


Communities in charge of alcohol (CICA): a protocol for a stepped-wedge randomised control trial of an alcohol health champions programme.

Cook PA, Hargreaves SC, Burns EJ, de Vocht F, Parrott S, Coffey M, Audrey S, Ure C, Duffy P, Ottiwell D, Kenth K, Hare S, Ardern K.

BMC Public Health. 2018 Apr 19;18(1):522. doi: 10.1186/s12889-018-5410-0.


Cognitive Behavioral Therapy Is Associated With Enhanced Cognitive Control Network Activity in Major Depression and Posttraumatic Stress Disorder.

Yang Z, Oathes DJ, Linn KA, Bruce SE, Satterthwaite TD, Cook PA, Satchell EK, Shou H, Sheline YI.

Biol Psychiatry Cogn Neurosci Neuroimaging. 2018 Apr;3(4):311-319. doi: 10.1016/j.bpsc.2017.12.006. Epub 2017 Dec 28.


The impact of in-scanner head motion on structural connectivity derived from diffusion MRI.

Baum GL, Roalf DR, Cook PA, Ciric R, Rosen AFG, Xia C, Elliott MA, Ruparel K, Verma R, Tunç B, Gur RC, Gur RE, Bassett DS, Satterthwaite TD.

Neuroimage. 2018 Jun;173:275-286. doi: 10.1016/j.neuroimage.2018.02.041. Epub 2018 Feb 24.


Diminished Cortical Thickness Is Associated with Impulsive Choice in Adolescence.

Pehlivanova M, Wolf DH, Sotiras A, Kaczkurkin AN, Moore TM, Ciric R, Cook PA, Garcia de La Garza A, Rosen AFG, Ruparel K, Sharma A, Shinohara RT, Roalf DR, Gur RC, Davatzikos C, Gur RE, Kable JW, Satterthwaite TD.

J Neurosci. 2018 Mar 7;38(10):2471-2481. doi: 10.1523/JNEUROSCI.2200-17.2018. Epub 2018 Feb 12.


Quantitative assessment of structural image quality.

Rosen AFG, Roalf DR, Ruparel K, Blake J, Seelaus K, Villa LP, Ciric R, Cook PA, Davatzikos C, Elliott MA, Garcia de La Garza A, Gennatas ED, Quarmley M, Schmitt JE, Shinohara RT, Tisdall MD, Craddock RC, Gur RE, Gur RC, Satterthwaite TD.

Neuroimage. 2018 Apr 1;169:407-418. doi: 10.1016/j.neuroimage.2017.12.059. Epub 2017 Dec 24.


A Retrospective Study of Predictors of Return to Duty versus Medical Retirement in an Active Duty Military Population with Blast-Related Mild Traumatic Brain Injury.

Cook PA, Johnson TM, Martin SG, Gehrman PR, Bhatnagar S, Gee JC.

J Neurotrauma. 2018 Apr 15;35(8):991-1002. doi: 10.1089/neu.2017.5141. Epub 2018 Mar 1.


Harmonization of cortical thickness measurements across scanners and sites.

Fortin JP, Cullen N, Sheline YI, Taylor WD, Aselcioglu I, Cook PA, Adams P, Cooper C, Fava M, McGrath PJ, McInnis M, Phillips ML, Trivedi MH, Weissman MM, Shinohara RT.

Neuroimage. 2018 Feb 15;167:104-120. doi: 10.1016/j.neuroimage.2017.11.024. Epub 2017 Nov 17.


Prenatal alcohol exposure and traumatic childhood experiences: A systematic review.

Price A, Cook PA, Norgate S, Mukherjee R.

Neurosci Biobehav Rev. 2017 Sep;80:89-98. doi: 10.1016/j.neubiorev.2017.05.018. Epub 2017 May 25. Review.


Modular Segregation of Structural Brain Networks Supports the Development of Executive Function in Youth.

Baum GL, Ciric R, Roalf DR, Betzel RF, Moore TM, Shinohara RT, Kahn AE, Vandekar SN, Rupert PE, Quarmley M, Cook PA, Elliott MA, Ruparel K, Gur RE, Gur RC, Bassett DS, Satterthwaite TD.

Curr Biol. 2017 Jun 5;27(11):1561-1572.e8. doi: 10.1016/j.cub.2017.04.051. Epub 2017 May 25.


Childhood socioeconomic status and childhood maltreatment: Distinct associations with brain structure.

Lawson GM, Camins JS, Wisse L, Wu J, Duda JT, Cook PA, Gee JC, Farah MJ.

PLoS One. 2017 Apr 17;12(4):e0175690. doi: 10.1371/journal.pone.0175690. eCollection 2017.


Cognitive behavioral therapy increases amygdala connectivity with the cognitive control network in both MDD and PTSD.

Shou H, Yang Z, Satterthwaite TD, Cook PA, Bruce SE, Shinohara RT, Rosenberg B, Sheline YI.

Neuroimage Clin. 2017 Jan 27;14:464-470. doi: 10.1016/j.nicl.2017.01.030. eCollection 2017.


What can be done to lessen morbidity associated with fetal alcohol spectrum disorders?

Mukherjee R, Cook PA, Fleming KM, Norgate SH.

Arch Dis Child. 2017 May;102(5):463-467. doi: 10.1136/archdischild-2016-310822. Epub 2016 Nov 1. Review.


Empirically derived cut-points for sedentary behaviour: are we sitting differently?

Clarke-Cornwell AM, Farragher TM, Cook PA, Granat MH.

Physiol Meas. 2016 Oct;37(10):1669-1685. Epub 2016 Sep 21.


Dimensional depression severity in women with major depression and post-traumatic stress disorder correlates with fronto-amygdalar hypoconnectivty.

Satterthwaite TD, Cook PA, Bruce SE, Conway C, Mikkelsen E, Satchell E, Vandekar SN, Durbin T, Shinohara RT, Sheline YI.

Mol Psychiatry. 2016 Jul;21(7):894-902. doi: 10.1038/mp.2015.149. Epub 2015 Sep 29.


Plasticity of the human visual system after retinal gene therapy in patients with Leber's congenital amaurosis.

Ashtari M, Zhang H, Cook PA, Cyckowski LL, Shindler KS, Marshall KA, Aravand P, Vossough A, Gee JC, Maguire AM, Baker CI, Bennett J.

Sci Transl Med. 2015 Jul 15;7(296):296ra110. doi: 10.1126/scitranslmed.aaa8791.


Prediction strength modulates responses in human area CA1 to sequence violations.

Chen J, Cook PA, Wagner AD.

J Neurophysiol. 2015 Aug;114(2):1227-38. doi: 10.1152/jn.00149.2015. Epub 2015 Jun 10.


Evaluation of work-based screening for early signs of alcohol-related liver disease in hazardous and harmful drinkers: the PrevAIL study.

Cook PA, Morleo M, Billington D, Sanderson-Shortt K, Jones C, Gabbay M, Sheron N, Bellis MA, Phillips-Howard PA, Gilmore IT.

BMC Public Health. 2015 Jun 4;15:532. doi: 10.1186/s12889-015-1860-9.


Large-scale evaluation of ANTs and FreeSurfer cortical thickness measurements.

Tustison NJ, Cook PA, Klein A, Song G, Das SR, Duda JT, Kandel BM, van Strien N, Stone JR, Gee JC, Avants BB.

Neuroimage. 2014 Oct 1;99:166-79. doi: 10.1016/j.neuroimage.2014.05.044. Epub 2014 May 29.


Reproducibility of graph metrics of human brain structural networks.

Duda JT, Cook PA, Gee JC.

Front Neuroinform. 2014 May 7;8:46. doi: 10.3389/fninf.2014.00046. eCollection 2014.


Relating brain anatomy and cognitive ability using a multivariate multimodal framework.

Cook PA, McMillan CT, Avants BB, Peelle JE, Gee JC, Grossman M.

Neuroimage. 2014 Oct 1;99:477-86. doi: 10.1016/j.neuroimage.2014.05.008. Epub 2014 May 13.


Alcohol industry sponsorship and hazardous drinking in UK university students who play sport.

O'Brien KS, Ferris J, Greenlees I, Jowett S, Rhind D, Cook PA, Kypri K.

Addiction. 2014 Oct;109(10):1647-54. doi: 10.1111/add.12604. Epub 2014 Jul 1.


Comparison of patients diagnosed with gonorrhoea through community screening with those self-presenting to the genitourinary medicine clinic.

Cook PA, Evans-Jones J, Mallinson H, Wood M, Alloba F, Jones K, Strodtbeck S, Hanna-Bashara L.

BMJ Open. 2014 Mar 14;4(3):e004862. doi: 10.1136/bmjopen-2014-004862.


Frontotemporal neural systems supporting semantic processing in Alzheimer's disease.

Peelle JE, Powers J, Cook PA, Smith EE, Grossman M.

Cogn Affect Behav Neurosci. 2014 Mar;14(1):37-48. doi: 10.3758/s13415-013-0239-6.


Genetic and neuroanatomic associations in sporadic frontotemporal lobar degeneration.

McMillan CT, Toledo JB, Avants BB, Cook PA, Wood EM, Suh E, Irwin DJ, Powers J, Olm C, Elman L, McCluskey L, Schellenberg GD, Lee VM, Trojanowski JQ, Van Deerlin VM, Grossman M.

Neurobiol Aging. 2014 Jun;35(6):1473-82. doi: 10.1016/j.neurobiolaging.2013.11.029. Epub 2013 Dec 2.


Manganese-enhanced magnetic resonance imaging (MEMRI) reveals brain circuitry involved in responding to an acute novel stress in rats with a history of repeated social stress.

Bangasser DA, Lee CS, Cook PA, Gee JC, Bhatnagar S, Valentino RJ.

Physiol Behav. 2013 Oct 2;122:228-36. doi: 10.1016/j.physbeh.2013.04.008. Epub 2013 May 2.


Parental knowledge of alcohol consumption: a cross sectional survey of 11-17 year old schoolchildren and their parents.

Morleo M, Cook PA, Elliott G, Phillips-Howard PA.

BMC Public Health. 2013 Apr 30;13:412. doi: 10.1186/1471-2458-13-412.


Impairment of script comprehension in Lewy body spectrum disorders.

Gross RG, Camp E, McMillan CT, Dreyfuss M, Gunawardena D, Cook PA, Morgan B, Siderowf A, Hurtig HI, Stern MB, Grossman M.

Brain Lang. 2013 Jun;125(3):330-43. doi: 10.1016/j.bandl.2013.02.006. Epub 2013 Apr 6.


White matter imaging helps dissociate tau from TDP-43 in frontotemporal lobar degeneration.

McMillan CT, Irwin DJ, Avants BB, Powers J, Cook PA, Toledo JB, McCarty Wood E, Van Deerlin VM, Lee VM, Trojanowski JQ, Grossman M.

J Neurol Neurosurg Psychiatry. 2013 Sep;84(9):949-55. doi: 10.1136/jnnp-2012-304418. Epub 2013 Mar 9.


The effects of deprivation and relative deprivation on self-reported morbidity in England: an area-level ecological study.

Zhang X, Cook PA, Lisboa PJ, Jarman IH, Bellis MA.

Int J Health Geogr. 2013 Jan 29;12:5. doi: 10.1186/1476-072X-12-5.


Heteromodal conceptual processing in the angular gyrus.

Bonner MF, Peelle JE, Cook PA, Grossman M.

Neuroimage. 2013 May 1;71:175-86. doi: 10.1016/j.neuroimage.2013.01.006. Epub 2013 Jan 17.


Eigenanatomy improves detection power for longitudinal cortical change.

Avants B, Dhillon P, Kandel BM, Cook PA, McMillan CT, Grossman M, Gee JC.

Med Image Comput Comput Assist Interv. 2012;15(Pt 3):206-13.


Logical circularity in voxel-based analysis: normalization strategy may induce statistical bias.

Tustison NJ, Avants BB, Cook PA, Kim J, Whyte J, Gee JC, Stone JR.

Hum Brain Mapp. 2014 Mar;35(3):745-59. doi: 10.1002/hbm.22211. Epub 2012 Nov 14.


Cognitive decline and reduced survival in C9orf72 expansion frontotemporal degeneration and amyotrophic lateral sclerosis.

Irwin DJ, McMillan CT, Brettschneider J, Libon DJ, Powers J, Rascovsky K, Toledo JB, Boller A, Bekisz J, Chandrasekaran K, Wood EM, Shaw LM, Woo JH, Cook PA, Wolk DA, Arnold SE, Van Deerlin VM, McCluskey LF, Elman L, Lee VM, Trojanowski JQ, Grossman M.

J Neurol Neurosurg Psychiatry. 2013 Feb;84(2):163-9. doi: 10.1136/jnnp-2012-303507. Epub 2012 Oct 31.


Accessibility of sexual health services in teenage sexual health service users: local area geospatial analysis.

Olsen JR, Cook PA, Forster S, Phillips-Howard PA.

J Public Health (Oxf). 2012 Aug;34(3):438-46. doi: 10.1093/pubmed/fdr120. Epub 2012 Feb 2.


Resolving axon fiber crossings at clinical b-values: an evaluation study.

Ramirez-Manzanares A, Cook PA, Hall M, Ashtari M, Gee JC.

Med Phys. 2011 Sep;38(9):5239-53. doi: 10.1118/1.3626571.


Difficulty processing temporary syntactic ambiguities in Lewy body spectrum disorder.

Grossman M, Gross RG, Moore P, Dreyfuss M, McMillan CT, Cook PA, Ash S, Siderowf A.

Brain Lang. 2012 Jan;120(1):52-60. doi: 10.1016/j.bandl.2011.08.007. Epub 2011 Sep 29.


The Big Drink Debate: perceptions of the impact of price on alcohol consumption from a large scale cross-sectional convenience survey in north west England.

Cook PA, Phillips-Howard PA, Morleo M, Harkins C, Briant L, Bellis MA.

BMC Public Health. 2011 Aug 23;11:664. doi: 10.1186/1471-2458-11-664.


Area effects on health inequalities: the impact of neighbouring deprivation on mortality.

Zhang X, Cook PA, Jarman I, Lisboa P.

Health Place. 2011 Nov;17(6):1266-73. doi: 10.1016/j.healthplace.2011.05.009. Epub 2011 May 30.


An open source multivariate framework for n-tissue segmentation with evaluation on public data.

Avants BB, Tustison NJ, Wu J, Cook PA, Gee JC.

Neuroinformatics. 2011 Dec;9(4):381-400. doi: 10.1007/s12021-011-9109-y.


Under-reporting of foetal alcohol spectrum disorders: an analysis of hospital episode statistics.

Morleo M, Woolfall K, Dedman D, Mukherjee R, Bellis MA, Cook PA.

BMC Pediatr. 2011 Feb 8;11:14. doi: 10.1186/1471-2431-11-14.

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