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Sleep's Role in Preventing and Treating Alzheimer's Disease: Are we moving towards slow wave assessment and enhancement?

Cook JD, Ferry DG, Tran KM.

Sleep. 2019 Dec 14. pii: zsz304. doi: 10.1093/sleep/zsz304. [Epub ahead of print] No abstract available.


Identifying subtypes of Hypersomnolence Disorder: a clustering analysis.

Cook JD, Rumble ME, Plante DT.

Sleep Med. 2019 Dec;64:71-76. doi: 10.1016/j.sleep.2019.06.015. Epub 2019 Jul 4.


Development and validation of the Hypersomnia Severity Index (HSI): A measure to assess hypersomnia severity and impairment in psychiatric disorders.

Kaplan KA, Plante DT, Cook JD, Harvey AG.

Psychiatry Res. 2019 Nov;281:112547. doi: 10.1016/j.psychres.2019.112547. Epub 2019 Aug 31.


Optimization of peptidic HIV-1 fusion inhibitor T20 by phage display.

Chen G, Cook JD, Ye W, Lee JE, Sidhu SS.

Protein Sci. 2019 Aug;28(8):1501-1512. doi: 10.1002/pro.3669.


Optimizing Actigraphic Estimation of Sleep Duration in Suspected Idiopathic Hypersomnia.

Cook JD, Eftekari SC, Leavitt LA, Prairie ML, Plante DT.

J Clin Sleep Med. 2019 Apr 15;15(4):597-602. doi: 10.5664/jcsm.7722.


Establishing the objective sleep phenotype in hypersomnolence disorder with and without comorbid major depression.

Plante DT, Cook JD, Barbosa LS, Goldstein MR, Prairie ML, Smith RF, Riedner BA.

Sleep. 2019 Jun 11;42(6). pii: zsz060. doi: 10.1093/sleep/zsz060.


Tyrosyl phosphorylation of KRAS stalls GTPase cycle via alteration of switch I and II conformation.

Kano Y, Gebregiworgis T, Marshall CB, Radulovich N, Poon BPK, St-Germain J, Cook JD, Valencia-Sama I, Grant BMM, Herrera SG, Miao J, Raught B, Irwin MS, Lee JE, Yeh JJ, Zhang ZY, Tsao MS, Ikura M, Ohh M.

Nat Commun. 2019 Jan 15;10(1):224. doi: 10.1038/s41467-018-08115-8.


Ability of the Fitbit Alta HR to quantify and classify sleep in patients with suspected central disorders of hypersomnolence: A comparison against polysomnography.

Cook JD, Eftekari SC, Dallmann E, Sippy M, Plante DT.

J Sleep Res. 2019 Aug;28(4):e12789. doi: 10.1111/jsr.12789. Epub 2018 Nov 8.


Solvent-Controlled Branching of Localized versus Delocalized Singlet Exciton States and Equilibration with Charge Transfer in a Structurally Well-Defined Tetracene Dimer.

Cook JD, Carey TJ, Arias DH, Johnson JC, Damrauer NH.

J Phys Chem A. 2017 Dec 7;121(48):9229-9242. doi: 10.1021/acs.jpca.7b09458. Epub 2017 Nov 21.


Peropsin modulates transit of vitamin A from retina to retinal pigment epithelium.

Cook JD, Ng SY, Lloyd M, Eddington S, Sun H, Nathans J, Bok D, Radu RA, Travis GH.

J Biol Chem. 2017 Dec 29;292(52):21407-21416. doi: 10.1074/jbc.M117.812701. Epub 2017 Nov 6.


Utility of the Fitbit Flex to evaluate sleep in major depressive disorder: A comparison against polysomnography and wrist-worn actigraphy.

Cook JD, Prairie ML, Plante DT.

J Affect Disord. 2017 Aug 1;217:299-305. doi: 10.1016/j.jad.2017.04.030. Epub 2017 Apr 19.


Comparing three regularization methods to avoid extreme allocation probability in response-adaptive randomization.

Du Y, Cook JD, Lee JJ.

J Biopharm Stat. 2018;28(2):309-319. doi: 10.1080/10543406.2017.1293077. Epub 2017 Mar 21.


Structure of the infectious salmon anemia virus receptor complex illustrates a unique binding strategy for attachment.

Cook JD, Sultana A, Lee JE.

Proc Natl Acad Sci U S A. 2017 Apr 4;114(14):E2929-E2936. doi: 10.1073/pnas.1617993114. Epub 2017 Mar 20.


New structural and functional insight into the regulation of Ras.

Kano Y, Cook JD, Lee JE, Ohh M.

Semin Cell Dev Biol. 2016 Oct;58:70-8. doi: 10.1016/j.semcdb.2016.06.006. Epub 2016 Jun 11. Review.


Solution-Phase Singlet Fission in a Structurally Well-Defined Norbornyl-Bridged Tetracene Dimer.

Cook JD, Carey TJ, Damrauer NH.

J Phys Chem A. 2016 Jul 7;120(26):4473-81. doi: 10.1021/acs.jpca.6b04367. Epub 2016 Jun 24.


Polymorphism influences singlet fission rates in tetracene thin films.

Arias DH, Ryerson JL, Cook JD, Damrauer NH, Johnson JC.

Chem Sci. 2016 Feb 1;7(2):1185-1191. doi: 10.1039/c5sc03535j. Epub 2015 Nov 6.


Effects of oral temazepam on slow waves during non-rapid eye movement sleep in healthy young adults: A high-density EEG investigation.

Plante DT, Goldstein MR, Cook JD, Smith R, Riedner BA, Rumble ME, Jelenchick L, Roth A, Tononi G, Benca RM, Peterson MJ.

Int J Psychophysiol. 2016 Mar;101:25-32. doi: 10.1016/j.ijpsycho.2016.01.003. Epub 2016 Jan 15.


Effects of partial sleep deprivation on slow waves during non-rapid eye movement sleep: A high density EEG investigation.

Plante DT, Goldstein MR, Cook JD, Smith R, Riedner BA, Rumble ME, Jelenchick L, Roth A, Tononi G, Benca RM, Peterson MJ.

Clin Neurophysiol. 2016 Feb;127(2):1436-1444. doi: 10.1016/j.clinph.2015.10.040. Epub 2015 Nov 10.


The 5α-reductase inhibitor finasteride is not associated with alterations in sleep spindles in men referred for polysomnography.

Goldstein MR, Cook JD, Plante DT.

Hum Psychopharmacol. 2016 Jan;31(1):70-4. doi: 10.1002/hup.2502. Epub 2015 Oct 23.


Effects of oral temazepam on sleep spindles during non-rapid eye movement sleep: A high-density EEG investigation.

Plante DT, Goldstein MR, Cook JD, Smith R, Riedner BA, Rumble ME, Jelenchick L, Roth A, Tononi G, Benca RM, Peterson MJ.

Eur Neuropsychopharmacol. 2015 Oct;25(10):1600-10. doi: 10.1016/j.euroneuro.2015.06.005. Epub 2015 Jul 2.


Electrostatic Architecture of the Infectious Salmon Anemia Virus (ISAV) Core Fusion Protein Illustrates a Carboxyl-Carboxylate pH Sensor.

Cook JD, Soto-Montoya H, Korpela MK, Lee JE.

J Biol Chem. 2015 Jul 24;290(30):18495-504. doi: 10.1074/jbc.M115.644781. Epub 2015 Jun 16.


Src promotes GTPase activity of Ras via tyrosine 32 phosphorylation.

Bunda S, Heir P, Srikumar T, Cook JD, Burrell K, Kano Y, Lee JE, Zadeh G, Raught B, Ohh M.

Proc Natl Acad Sci U S A. 2014 Sep 9;111(36):E3785-94. doi: 10.1073/pnas.1406559111. Epub 2014 Aug 25.


Immunohistochemical application of a highly sensitive and specific murine monoclonal antibody recognising the extracellular domain of the human hepatocyte growth factor receptor (MET).

Gruver AM, Liu L, Vaillancourt P, Yan SC, Cook JD, Roseberry Baker JA, Felke EM, Lacy ME, Marchal CC, Szpurka H, Holzer TR, Rhoads EK, Zeng W, Wortinger MA, Lu J, Chow CK, Denning IJ, Beuerlein G, Davies J, Hanson JC, Credille KM, Wijayawardana SR, Schade AE.

Histopathology. 2014 Dec;65(6):879-96. doi: 10.1111/his.12510. Epub 2014 Oct 6.


Celebrating Ruth F. Stewart MS, RN, FAAN, FAPHA.

Cook JD, Cardea JM.

Tex Nurs. 2014 Winter;88(1):12-3, 17. No abstract available.


Identification of the 11-cis-specific retinyl-ester synthase in retinal Müller cells as multifunctional O-acyltransferase (MFAT).

Kaylor JJ, Cook JD, Makshanoff J, Bischoff N, Yong J, Travis GH.

Proc Natl Acad Sci U S A. 2014 May 20;111(20):7302-7. doi: 10.1073/pnas.1319142111. Epub 2014 May 5.


Enhancing resilience, empowerment, and conflict management among baccalaureate students: outcomes of a pilot study.

Pines EW, Rauschhuber ML, Cook JD, Norgan GH, Canchola L, Richardson C, Jones ME.

Nurse Educ. 2014 Mar-Apr;39(2):85-90. doi: 10.1097/NNE.0000000000000023.


Crystal structures of beta- and gammaretrovirus fusion proteins reveal a role for electrostatic stapling in viral entry.

Aydin H, Cook JD, Lee JE.

J Virol. 2014 Jan;88(1):143-53. doi: 10.1128/JVI.02023-13. Epub 2013 Oct 16.


A complete diet-based algorithm for predicting nonheme iron absorption in adults.

Armah SM, Carriquiry A, Sullivan D, Cook JD, Reddy MB.

J Nutr. 2013 Jul;143(7):1136-40. doi: 10.3945/jn.112.169904. Epub 2013 May 22.


The secret life of viral entry glycoproteins: moonlighting in immune evasion.

Cook JD, Lee JE.

PLoS Pathog. 2013;9(5):e1003258. doi: 10.1371/journal.ppat.1003258. Epub 2013 May 16. Review. No abstract available.


PI3K/mTOR inhibitor PF-04691502 antitumor activity is enhanced with induction of wild-type TP53 in human xenograft and murine knockout models of head and neck cancer.

Herzog A, Bian Y, Vander Broek R, Hall B, Coupar J, Cheng H, Sowers AL, Cook JD, Mitchell JB, Chen Z, Kulkarni AB, Van Waes C.

Clin Cancer Res. 2013 Jul 15;19(14):3808-19. doi: 10.1158/1078-0432.CCR-12-2716. Epub 2013 May 2.


A convenient and general expression platform for the production of secreted proteins from human cells.

Aydin H, Azimi FC, Cook JD, Lee JE.

J Vis Exp. 2012 Jul 31;(65). pii: 4041. doi: 10.3791/4041.


Associations between single nucleotide polymorphisms in iron-related genes and iron status in multiethnic populations.

McLaren CE, McLachlan S, Garner CP, Vulpe CD, Gordeuk VR, Eckfeldt JH, Adams PC, Acton RT, Murray JA, Leiendecker-Foster C, Snively BM, Barcellos LF, Cook JD, McLaren GD.

PLoS One. 2012;7(6):e38339. doi: 10.1371/journal.pone.0038339. Epub 2012 Jun 22.


Stress resiliency, psychological empowerment and conflict management styles among baccalaureate nursing students.

Pines EW, Rauschhuber ML, Norgan GH, Cook JD, Canchola L, Richardson C, Jones ME.

J Adv Nurs. 2012 Jul;68(7):1482-93. doi: 10.1111/j.1365-2648.2011.05875.x. Epub 2011 Nov 14.


Genome-wide association study identifies genetic loci associated with iron deficiency.

McLaren CE, Garner CP, Constantine CC, McLachlan S, Vulpe CD, Snively BM, Gordeuk VR, Nickerson DA, Cook JD, Leiendecker-Foster C, Beckman KB, Eckfeldt JH, Barcellos LF, Murray JA, Adams PC, Acton RT, Killeen AA, McLaren GD.

PLoS One. 2011 Mar 31;6(3):e17390. doi: 10.1371/journal.pone.0017390.


A family history intervention: enhancing cardiovascular risk assessment.

McNeill JA, Cook JD, Mahon M, Allwein DA, Rauschhuber M, Richardson CO, Muñoz LR, Estrada R, Jones ME.

AAOHN J. 2011 Apr;59(4):181-92; quiz 193-4. doi: 10.3928/08910162-20110328-03.


Molecular details of the yeast frataxin-Isu1 interaction during mitochondrial Fe-S cluster assembly.

Cook JD, Kondapalli KC, Rawat S, Childs WC, Murugesan Y, Dancis A, Stemmler TL.

Biochemistry. 2010 Oct 12;49(40):8756-65. doi: 10.1021/bi1008613. Epub 2010 Sep 14.


Membrane lipids influence protein complex assembly-disassembly.

Shin L, Cho WJ, Cook JD, Stemmler TL, Jena BP.

J Am Chem Soc. 2010 Apr 28;132(16):5596-7. doi: 10.1021/ja101574d.


Bayesian design of single-arm phase II clinical trials with continuous monitoring.

Johnson VE, Cook JD.

Clin Trials. 2009 Jun;6(3):217-26. doi: 10.1177/1740774509105221.


Sp1 and Sp3 regulate transcription of the cyclin-dependent kinase 5 regulatory subunit 2 (p39) promoter in neuronal cells.

Valin A, Cook JD, Ross S, Saklad CL, Gill G.

Biochim Biophys Acta. 2009 Mar;1789(3):204-11.


Assessment of iron deficiency in US preschool children and nonpregnant females of childbearing age: National Health and Nutrition Examination Survey 2003-2006.

Cogswell ME, Looker AC, Pfeiffer CM, Cook JD, Lacher DA, Beard JL, Lynch SR, Grummer-Strawn LM.

Am J Clin Nutr. 2009 May;89(5):1334-42. doi: 10.3945/ajcn.2008.27151. Epub 2009 Apr 8.


Structure and dynamics of metalloproteins in live cells.

Cook JD, Penner-Hahn JE, Stemmler TL.

Methods Cell Biol. 2008;90:199-216. doi: 10.1016/S0091-679X(08)00810-8.


Identification of uterine leiomyoma genes developmentally reprogrammed by neonatal exposure to diethylstilbestrol.

Greathouse KL, Cook JD, Lin K, Davis BJ, Berry TD, Bredfeldt TG, Walker CL.

Reprod Sci. 2008 Oct;15(8):765-78. doi: 10.1177/1933719108322440.


Biomarkers of alcohol use in pregnancy.

Bearer CF, Stoler JM, Cook JD, Carpenter SJ.

Alcohol Res Health. 2004-2005;28(1):38-43. No abstract available.


Practical model-based dose finding in early-phase clinical trials: optimizing tissue plasminogen activator dose for treatment of ischemic stroke in children.

Whelan HT, Cook JD, Amlie-Lefond CM, Hovinga CA, Chan AK, Ichord RN, Deveber GA, Thall PF.

Stroke. 2008 Sep;39(9):2627-36. doi: 10.1161/STROKEAHA.107.510164. Epub 2008 Jul 10.


Evolution of metal(loid) binding sites in transcriptional regulators.

Ordóñez E, Thiyagarajan S, Cook JD, Stemmler TL, Gil JA, Mateos LM, Rosen BP.

J Biol Chem. 2008 Sep 12;283(37):25706-14. doi: 10.1074/jbc.M803209200. Epub 2008 Jun 30.


Dose--schedule finding in phase I/II clinical trials using a Bayesian isotonic transformation.

Li Y, Bekele BN, Ji Y, Cook JD.

Stat Med. 2008 Oct 30;27(24):4895-913. doi: 10.1002/sim.3329.


Developmental reprogramming of IGF signaling and susceptibility to endometrial hyperplasia in the rat.

McCampbell AS, Walker CL, Broaddus RR, Cook JD, Davies PJ.

Lab Invest. 2008 Jun;88(6):615-26. doi: 10.1038/labinvest.2008.29. Epub 2008 Apr 21.

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