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Complex History of Codiversification and Host Switching of a Newfound Soricid-Borne Orthohantavirus in North America.

Liphardt SW, Kang HJ, Dizney LJ, Ruedas LA, Cook JA, Yanagihara R.

Viruses. 2019 Jul 11;11(7). pii: E637. doi: 10.3390/v11070637.


Human iPSC-Derived Cardiomyocyte Networks on Multiwell Micro-electrode Arrays for Recurrent Action Potential Recordings.

Zlochiver V, Kroboth SL, Beal CR, Cook JA, Joshi-Mukherjee R.

J Vis Exp. 2019 Jul 15;(149). doi: 10.3791/59906.


The clinical and cost-effectiveness of total versus partial knee replacement in patients with medial compartment osteoarthritis (TOPKAT): 5-year outcomes of a randomised controlled trial.

Beard DJ, Davies LJ, Cook JA, MacLennan G, Price A, Kent S, Hudson J, Carr A, Leal J, Campbell H, Fitzpatrick R, Arden N, Murray D, Campbell MK; TOPKAT Study Group.

Lancet. 2019 Aug 31;394(10200):746-756. doi: 10.1016/S0140-6736(19)31281-4. Epub 2019 Jul 17.


The next chapter of human-plague science.

McLean BS, Cook JA, Durden LA, Hoberg EP, Guralnick RP.

Proc Natl Acad Sci U S A. 2019 Jul 16;116(29):14411-14412. doi: 10.1073/pnas.1908836116. Epub 2019 Jun 28. No abstract available.


Funders improved the management of learning and clustering effects through design and analysis of randomized trials involving surgery.

Conroy EJ, Rosala-Hallas A, Blazeby JM, Burnside G, Cook JA, Gamble C.

J Clin Epidemiol. 2019 Sep;113:28-35. doi: 10.1016/j.jclinepi.2019.05.007. Epub 2019 May 20.


There is still a place for significance testing in clinical trials.

Cook JA, Fergusson DA, Ford I, Gonen M, Kimmelman J, Korn EL, Begg CB.

Clin Trials. 2019 Jun;16(3):223-224. doi: 10.1177/1740774519846504. Epub 2019 May 9. No abstract available.


Building an integrated infrastructure for exploring biodiversity: field collections and archives of mammals and parasites.

Galbreath KE, Hoberg EP, Cook JA, Armién B, Bell KC, Campbell ML, Dunnum JL, Dursahinhan AT, Eckerlin RP, Gardner SL, Greiman SE, Henttonen H, Jiménez FA, Koehler AVA, Nyamsuren B, Tkach VV, Torres-Pérez F, Tsvetkova A, Hope AG.

J Mammal. 2019 Apr 24;100(2):382-393. doi: 10.1093/jmammal/gyz048. Epub 2019 Apr 10.


Duration of Treatment Effect Should Be Considered in the Design and Interpretation of Clinical Trials: Results of a Discrete Choice Experiment.

Copsey B, Buchanan J, Fitzpatrick R, Lamb SE, Dutton SJ, Cook JA.

Med Decis Making. 2019 May;39(4):461-473. doi: 10.1177/0272989X19841877. Epub 2019 Apr 8.


Surgical fixation with K-wires versus plaster casting in the treatment of dorsally displaced distal radius fractures: protocol for Distal Radius Acute Fracture Fixation Trial 2 (DRAFFT 2).

Achten J, Sones W, Dias J, Hedley H, Cook JA, Dritsaki M, Png ME, Gray A, Lamb SE, Costa ML.

BMJ Open. 2019 Mar 23;9(3):e028474. doi: 10.1136/bmjopen-2018-028474.


Living on the edge: Exploring the role of coastal refugia in the Alexander Archipelago of Alaska.

Sawyer YE, MacDonald SO, Lessa EP, Cook JA.

Ecol Evol. 2019 Feb 1;9(4):1777-1797. doi: 10.1002/ece3.4861. eCollection 2019 Feb.


Abemaciclib: A multi-functional radiation modifier.

Naz S, Cook JA, Mitchell JB.

Oncotarget. 2019 Feb 8;10(12):1230-1232. doi: 10.18632/oncotarget.26652. eCollection 2019 Feb 8. No abstract available.


Exosomes from endothelial progenitor cells improve outcomes of the lipopolysaccharide-induced acute lung injury.

Zhou Y, Li P, Goodwin AJ, Cook JA, Halushka PV, Chang E, Zingarelli B, Fan H.

Crit Care. 2019 Feb 13;23(1):44. doi: 10.1186/s13054-019-2339-3.


Patient and public involvement (PPI) in UK surgical trials: a survey and focus groups with stakeholders to identify practices, views, and experiences.

Crocker JC, Pratt-Boyden K, Hislop J, Rees S, Locock L, Olszowski S, Chant A, Treweek S, Cook JA, Woolfall K, Farrar N, Bostock J, Bulbulia R.

Trials. 2019 Feb 11;20(1):119. doi: 10.1186/s13063-019-3183-0.


Fli-1 transcription factor regulates the expression of caspase-1 in lung pericytes.

Li P, Goodwin AJ, Cook JA, Halushka PV, Zhang XK, Fan H.

Mol Immunol. 2019 Apr;108:1-7. doi: 10.1016/j.molimm.2019.02.003. Epub 2019 Feb 8.


Mental Health Self-Directed Care Financing: Efficacy in Improving Outcomes and Controlling Costs for Adults With Serious Mental Illness.

Cook JA, Shore S, Burke-Miller JK, Jonikas JA, Hamilton M, Ruckdeschel B, Norris W, Markowitz AF, Ferrara M, Bhaumik D.

Psychiatr Serv. 2019 Mar 1;70(3):191-201. doi: 10.1176/ Epub 2019 Jan 11.


Cost-effectiveness analysis of a placebo-controlled randomized trial evaluating the effectiveness of arthroscopic subacromial decompression in patients with subacromial shoulder pain.

Rombach I, Merritt N, Shirkey BA, Rees JL, Cook JA, Cooper C, Carr AJ, Beard DJ, Gray AM.

Bone Joint J. 2019 Jan;101-B(1):55-62. doi: 10.1302/0301-620X.101B1.BJJ-2018-0555.R1.


Patch-augmented rotator cuff surgery (PARCS) study-protocol for a feasibility study.

Cook JA, Merritt N, Rees JL, Crocker JC, Hopewell S, Dritsaki M, Beard DJ, Rangan A, Cooper C, Kottam L, Farrar-Hockley D, Thomas M, Earle R, Carr AJ.

Pilot Feasibility Stud. 2018 Dec 21;4:188. doi: 10.1186/s40814-018-0380-7. eCollection 2018.


Complexity of health news reporting on breast implant-associated anaplastic large cell lymphoma.

Cook JA, Sasor SE, Tholpady SS, Chu MW, Momeni A.

Breast J. 2019 Jan;25(1):163-165. doi: 10.1111/tbj.13189. Epub 2018 Dec 28. No abstract available.


DELTA2 guidance on choosing the target difference and undertaking and reporting the sample size calculation for a randomised controlled trial.

Cook JA, Julious SA, Sones W, Hampson LV, Hewitt C, Berlin JA, Ashby D, Emsley R, Fergusson DA, Walters SJ, Wilson ECF, MacLennan G, Stallard N, Rothwell JC, Bland M, Brown L, Ramsay CR, Cook A, Armstrong D, Altman D, Vale LD.

BMJ. 2018 Nov 5;363:k3750. doi: 10.1136/bmj.k3750. No abstract available.


Museum specimens of terrestrial vertebrates are sensitive indicators of environmental change in the Anthropocene.

Schmitt CJ, Cook JA, Zamudio KR, Edwards SV.

Philos Trans R Soc Lond B Biol Sci. 2018 Nov 19;374(1763). pii: 20170387. doi: 10.1098/rstb.2017.0387. Review.


Randomized trials involving surgery did not routinely report considerations of learning and clustering effects.

Conroy EJ, Rosala-Hallas A, Blazeby JM, Burnside G, Cook JA, Gamble C.

J Clin Epidemiol. 2019 Mar;107:27-35. doi: 10.1016/j.jclinepi.2018.11.004. Epub 2018 Nov 13.


Systematic review of the surgical management of rotator cuff repair with an augmentative patch: a feasibility study protocol.

Greenall G, Carr A, Beard D, Rees J, Rangan A, Merritt N, Dritsaki M, Nagra NS, Baldwin M, Hopewell S, Cook JA.

Syst Rev. 2018 Nov 13;7(1):187. doi: 10.1186/s13643-018-0851-1.


Patient-Reported Outcomes and Factors Associated With Patient Satisfaction After Surgical Treatment of Facial Nonmelanoma Skin Cancer.

Sasor SE, Cook JA, Loewenstein SN, Wooden WA, Cohen AC, Chu MW, Tholpady SS.

JAMA Surg. 2019 Feb 1;154(2):179-181. doi: 10.1001/jamasurg.2018.3534. No abstract available.


DELTA2 guidance on choosing the target difference and undertaking and reporting the sample size calculation for a randomised controlled trial.

Cook JA, Julious SA, Sones W, Hampson LV, Hewitt C, Berlin JA, Ashby D, Emsley R, Fergusson DA, Walters SJ, Wilson ECF, Maclennan G, Stallard N, Rothwell JC, Bland M, Brown L, Ramsay CR, Cook A, Armstrong D, Altman D, Vale LD.

Trials. 2018 Nov 5;19(1):606. doi: 10.1186/s13063-018-2884-0.


Museum metabarcoding: A novel method revealing gut helminth communities of small mammals across space and time.

Greiman SE, Cook JA, Tkach VV, Hoberg EP, Menning DM, Hope AG, Sonsthagen SA, Talbot SL.

Int J Parasitol. 2018 Nov;48(13):1061-1070. doi: 10.1016/j.ijpara.2018.08.001. Epub 2018 Oct 11.


Choosing the target difference and undertaking and reporting the sample size calculation for a randomised controlled trial - the development of the DELTA2 guidance.

Sones W, Julious SA, Rothwell JC, Ramsay CR, Hampson LV, Emsley R, Walters SJ, Hewitt C, Bland M, Fergusson DA, Berlin JA, Altman D, Vale LD, Cook JA.

Trials. 2018 Oct 10;19(1):542. doi: 10.1186/s13063-018-2887-x.


Whole-genome analysis of Mustela erminea finds that pulsed hybridization impacts evolution at high latitudes.

Colella JP, Lan T, Schuster SC, Talbot SL, Cook JA, Lindqvist C.

Commun Biol. 2018 May 31;1:51. doi: 10.1038/s42003-018-0058-y. eCollection 2018.


Application of Deacetylated Poly-N-Acetyl Glucosamine Nanoparticles for the Delivery of miR-126 for the Treatment of Cecal Ligation and Puncture-Induced Sepsis.

Jones Buie JN, Zhou Y, Goodwin AJ, Cook JA, Vournakis J, Demcheva M, Broome AM, Dixit S, Halushka PV, Fan H.

Inflammation. 2019 Feb;42(1):170-184. doi: 10.1007/s10753-018-0882-8.


Impacts of Inference Method and Data set Filtering on Phylogenomic Resolution in a Rapid Radiation of Ground Squirrels (Xerinae: Marmotini).

Mclean BS, Bell KC, Allen JM, Helgen KM, Cook JA.

Syst Biol. 2019 Mar 1;68(2):298-316. doi: 10.1093/sysbio/syy064.


Problems persist in reporting of methods and results for the WOMAC measure in hip and knee osteoarthritis trials.

Copsey B, Thompson JY, Vadher K, Ali U, Dutton SJ, Fitzpatrick R, Lamb SE, Cook JA.

Qual Life Res. 2019 Feb;28(2):335-343. doi: 10.1007/s11136-018-1978-1. Epub 2018 Sep 18. Review.


Surgeons' and methodologists' perceptions of utilising an expertise-based randomised controlled trial design: a qualitative study.

Cook JA, Campbell MK, Gillies K, Skea Z.

Trials. 2018 Sep 6;19(1):478. doi: 10.1186/s13063-018-2832-z.


Sample size calculations are poorly conducted and reported in many randomized trials of hip and knee osteoarthritis: results of a systematic review.

Copsey B, Thompson JY, Vadher K, Ali U, Dutton SJ, Fitzpatrick R, Lamb SE, Cook JA.

J Clin Epidemiol. 2018 Dec;104:52-61. doi: 10.1016/j.jclinepi.2018.08.013. Epub 2018 Aug 23. Review.


Sympatric Parasites Have Similar Host-Associated, but Asynchronous, Patterns of Diversification.

Bell KC, Demboski JR, Cook JA.

Am Nat. 2018 Sep;192(3):E106-E119. doi: 10.1086/698300. Epub 2018 Jul 11.


Can Shoulder Arthroscopy Work? (CSAW) trial - Authors' reply.

Beard DJ, Carr AJ, Cook JA.

Lancet. 2018 Jul 28;392(10144):281-282. doi: 10.1016/S0140-6736(18)30773-6. No abstract available.


Fli-1 Governs Pericyte Dysfunction in a Murine Model of Sepsis.

Li P, Zhou Y, Goodwin AJ, Cook JA, Halushka PV, Zhang XK, Wilson CL, Schnapp LM, Zingarelli B, Fan H.

J Infect Dis. 2018 Nov 5;218(12):1995-2005. doi: 10.1093/infdis/jiy451.


The next generation of natural history collections.

Schindel DE, Cook JA.

PLoS Biol. 2018 Jul 16;16(7):e2006125. doi: 10.1371/journal.pbio.2006125. eCollection 2018 Jul.


Tourniquet Use in Wide-Awake Carpal Tunnel Release.

Sasor SE, Cook JA, Duquette SP, Lucich EA, Cohen AC, Wooden WA, Tholpady SS, Chu MW.

Hand (N Y). 2018 Jul 1:1558944718787853. doi: 10.1177/1558944718787853. [Epub ahead of print]


Scholarly activity in academic plastic surgery: the gender difference.

Sasor SE, Cook JA, Duquette SP, Loewenstein SN, Gallagher S, Tholpady SS, Chu MW, Koniaris LG.

J Surg Res. 2018 Sep;229:332-336. doi: 10.1016/j.jss.2018.04.031. Epub 2018 May 10.


ITC Commentary on Metformin Clinical Drug-Drug Interaction Study Design That Enables an Efficacy- and Safety-Based Dose Adjustment Decision.

Zamek-Gliszczynski MJ, Chu X, Cook JA, Custodio JM, Galetin A, Giacomini KM, Lee CA, Paine MF, Ray AS, Ware JA, Wittwer MB, Zhang L; International Transporter Consortium.

Clin Pharmacol Ther. 2018 Nov;104(5):781-784. doi: 10.1002/cpt.1082. Epub 2018 May 15.


Abemaciclib, a Selective CDK4/6 Inhibitor, Enhances the Radiosensitivity of Non-Small Cell Lung Cancer In Vitro and In Vivo.

Naz S, Sowers A, Choudhuri R, Wissler M, Gamson J, Mathias A, Cook JA, Mitchell JB.

Clin Cancer Res. 2018 Aug 15;24(16):3994-4005. doi: 10.1158/1078-0432.CCR-17-3575. Epub 2018 May 1.


Omental Vascularized Lymph Node Flap: A Radiographic Analysis.

Cook JA, Sasor SE, Tholpady SS, Chu MW.

J Reconstr Microsurg. 2018 Sep;34(7):472-477. doi: 10.1055/s-0038-1642637. Epub 2018 Apr 16.


Prevalence and reporting of recruitment, randomisation and treatment errors in clinical trials: A systematic review.

Yelland LN, Kahan BC, Dent E, Lee KJ, Voysey M, Forbes AB, Cook JA.

Clin Trials. 2018 Jun;15(3):278-285. doi: 10.1177/1740774518761627. Epub 2018 Apr 11.


Cost Effectiveness of Stapled Haemorrhoidopexy and Traditional Excisional Surgery for the Treatment of Haemorrhoidal Disease.

Kilonzo MM, Brown SR, Bruhn H, Cook JA, Hudson J, Norrie J, Watson AJM, Wood J.

Pharmacoecon Open. 2018 Sep;2(3):271-280. doi: 10.1007/s41669-017-0052-1.


Exosomes from Endothelial Progenitor Cells Improve the Outcome of a Murine Model of Sepsis.

Zhou Y, Li P, Goodwin AJ, Cook JA, Halushka PV, Chang E, Fan H.

Mol Ther. 2018 May 2;26(5):1375-1384. doi: 10.1016/j.ymthe.2018.02.020. Epub 2018 Feb 27.


Impacts of late Quaternary environmental change on the long-tailed ground squirrel (Urocitellus undulatus) in Mongolia.

McLean BS, Nyamsuren B, Tchabovsky A, Cook JA.

Zool Res. 2018 Sep 18;39(5):364-372. doi: 10.24272/j.issn.2095-8137.2018.042. Epub 2018 Mar 8.


Cancer Incidence in C3H Mice Protected from Lethal Total-Body Radiation after Amifostine.

Cook JA, Naz S, Anver MR, Sowers AL, Fabre K, Krishna MC, Mitchell JB.

Radiat Res. 2018 May;189(5):490-496. doi: 10.1667/RR14987.1. Epub 2018 Mar 12.


Response to "Letter to the editor: Predictors of internal mammary vessel diameter: A computed tomographic angiography-assisted anatomic analysis", Madada-Nyakauru, et al.

Cook JA, Tholpady SS, Momeni A, Chu MW.

J Plast Reconstr Aesthet Surg. 2018 Jun;71(6):938-939. doi: 10.1016/j.bjps.2018.01.043. Epub 2018 Feb 14. No abstract available.


Prevalence, Comorbidity, and Correlates of Psychiatric and Substance Use Disorders and Associations with HIV Risk Behaviors in a Multisite Cohort of Women Living with HIV.

Cook JA, Burke-Miller JK, Steigman PJ, Schwartz RM, Hessol NA, Milam J, Merenstein DJ, Anastos K, Golub ET, Cohen MH.

AIDS Behav. 2018 Oct;22(10):3141-3154. doi: 10.1007/s10461-018-2051-3.


Tumour risks and genotype-phenotype correlations associated with germline variants in succinate dehydrogenase subunit genes SDHB, SDHC and SDHD.

Andrews KA, Ascher DB, Pires DEV, Barnes DR, Vialard L, Casey RT, Bradshaw N, Adlard J, Aylwin S, Brennan P, Brewer C, Cole T, Cook JA, Davidson R, Donaldson A, Fryer A, Greenhalgh L, Hodgson SV, Irving R, Lalloo F, McConachie M, McConnell VPM, Morrison PJ, Murday V, Park SM, Simpson HL, Snape K, Stewart S, Tomkins SE, Wallis Y, Izatt L, Goudie D, Lindsay RS, Perry CG, Woodward ER, Antoniou AC, Maher ER.

J Med Genet. 2018 Jun;55(6):384-394. doi: 10.1136/jmedgenet-2017-105127. Epub 2018 Jan 31. Erratum in: J Med Genet. 2019 Jan;56(1):50-52.

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