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Items: 1 to 50 of 147

1.

Asymptomatic nodule on the back.

Adhikari P, Hankinson A, Cook DL, Pierson J.

Cutis. 2019 Mar;103(3):E18-E20. No abstract available.

PMID:
31039237
2.

Excess 180W in IIAB iron meteorites: Identification of cosmogenic, radiogenic, and nucleosynthetic components.

Cook DL, Smith T, Leya I, Hilton CD, Walker RJ, Schönbächler M.

Earth Planet Sci Lett. 2018 Dec 1;503:29-36. doi: 10.1016/j.epsl.2018.09.021. Epub 2018 Sep 28.

3.

Systemic Amyloidosis.

Metzger YC, Cook DL, Holmes TE.

JAMA Dermatol. 2019 Mar 1;155(3):371. doi: 10.1001/jamadermatol.2018.4413. No abstract available.

PMID:
30649139
4.

Harmonizing semantic annotations for computational models in biology.

Neal ML, König M, Nickerson D, Mısırlı G, Kalbasi R, Dräger A, Atalag K, Chelliah V, Cooling MT, Cook DL, Crook S, de Alba M, Friedman SH, Garny A, Gennari JH, Gleeson P, Golebiewski M, Hucka M, Juty N, Myers C, Olivier BG, Sauro HM, Scharm M, Snoep JL, Touré V, Wipat A, Wolkenhauer O, Waltemath D.

Brief Bioinform. 2019 Mar 22;20(2):540-550. doi: 10.1093/bib/bby087. Review.

5.

SemGen: a tool for semantics-based annotation and composition of biosimulation models.

Neal ML, Thompson CT, Kim KG, James RC, Cook DL, Carlson BE, Gennari JH.

Bioinformatics. 2019 May 1;35(9):1600-1602. doi: 10.1093/bioinformatics/bty829.

PMID:
30256901
6.

Pediatric cutaneous T-cell post-transplant lymphoproliferative disorder: Case report and review of the literature.

Rogers TS, McGevna L, Cook DL.

J Cutan Pathol. 2018 Nov;45(11):858-863. doi: 10.1111/cup.13331. Epub 2018 Aug 22. Review.

PMID:
30054921
7.

Chronic Kidney Disease: Detection and Evaluation.

Gaitonde DY, Cook DL, Rivera IM.

Am Fam Physician. 2017 Dec 15;96(12):776-783.

8.

Inverted follicular keratoses of the buttocks.

Kenney M, Lester EB, Cook DL.

J Cutan Pathol. 2018 May;45(5):369-370. doi: 10.1111/cup.13107. Epub 2018 Feb 27. No abstract available.

PMID:
29418015
9.

Sunburn purpura.

Loyal J, Sinclair NR, Hugh JM, Cook DL, Pierson JC.

Cutis. 2017 Oct;100(4):E15-E17. No abstract available.

PMID:
29136065
10.

Delirium Following Topical Application of Compounded Creams Containing Multiple Analgesic Medications in Geriatric Patients: Two New Cases.

Soumoff AA, Cook DL, Clark CC.

Psychosomatics. 2018 Jan - Feb;59(1):81-89. doi: 10.1016/j.psym.2017.08.009. Epub 2017 Aug 12. No abstract available.

PMID:
28918165
11.

Qualitative causal analyses of biosimulation models.

Neal ML, Gennari JH, Cook DL.

CEUR Workshop Proc. 2016 Aug;1747. pii: http://ceur-ws.org/Vol-1747/IT604_ICBO2016.pdf. Epub 2016 Nov 29.

12.

Protocol for the evaluation of a digital storytelling approach to address stigma and improve readiness to seek services among veterans.

Bunnell BE, Davidson TM, Hamblen JL, Cook DL, Grubaugh AL, Lozano BE, Tuerk PW, Ruggiero KJ.

Pilot Feasibility Stud. 2017 Feb 17;3:7. doi: 10.1186/s40814-017-0121-3. eCollection 2017.

13.

BaroFuse, a novel pressure-driven, adjustable-throughput perfusion system for tissue maintenance and assessment.

Rountree A, Karkamkar A, Khalil G, Folch A, Cook DL, Sweet IR.

Heliyon. 2016 Dec 9;2(12):e00210. eCollection 2016 Dec.

14.

Interstellar ^{60}Fe on the Surface of the Moon.

Fimiani L, Cook DL, Faestermann T, Gómez-Guzmán JM, Hain K, Herzog G, Knie K, Korschinek G, Ludwig P, Park J, Reedy RC, Rugel G.

Phys Rev Lett. 2016 Apr 15;116(15):151104. doi: 10.1103/PhysRevLett.116.151104. Epub 2016 Apr 13.

PMID:
27127953
15.

Semantics-Based Composition of Integrated Cardiomyocyte Models Motivated by Real-World Use Cases.

Neal ML, Carlson BE, Thompson CT, James RC, Kim KG, Tran K, Crampin EJ, Cook DL, Gennari JH.

PLoS One. 2015 Dec 30;10(12):e0145621. doi: 10.1371/journal.pone.0145621. eCollection 2015.

16.

Quantification of Low-Level Drug Effects Using Real-Time, in vitro Measurement of Oxygen Consumption Rate.

Neal A, Rountree AM, Philips CW, Kavanagh TJ, Williams DP, Newham P, Khalil G, Cook DL, Sweet IR.

Toxicol Sci. 2015 Dec;148(2):594-602. doi: 10.1093/toxsci/kfv208. Epub 2015 Sep 22.

17.

A reappraisal of how to build modular, reusable models of biological systems.

Neal ML, Cooling MT, Smith LP, Thompson CT, Sauro HM, Carlson BE, Cook DL, Gennari JH.

PLoS Comput Biol. 2014 Oct 2;10(10):e1003849. doi: 10.1371/journal.pcbi.1003849. eCollection 2014 Oct. No abstract available.

18.

Ontology of physics for biology: representing physical dependencies as a basis for biological processes.

Cook DL, Neal ML, Bookstein FL, Gennari JH.

J Biomed Semantics. 2013 Dec 2;4(1):41. doi: 10.1186/2041-1480-4-41.

19.

Fathead minnow response to broad-range exposure of β-sitosterol concentrations during life-cycle testing.

Flinders CA, Streblow WR, Philbeck RE, Cook DL, Campbell DE, Brown-Peterson NJ, Gross TS.

Environ Toxicol Chem. 2014 Feb;33(2):458-67. doi: 10.1002/etc.2440. Epub 2013 Dec 20.

PMID:
24173772
20.

Representing physiological processes and their participants with PhysioMaps.

Cook DL, Neal ML, Hoehndorf R, Gkoutos GV, Gennari JH.

J Biomed Semantics. 2013 Apr 15;4 Suppl 1:S2. doi: 10.1186/2041-1480-4-S1-S2. Epub 2013 Apr 15.

21.

Atypical pilar leiomyomatosis: an unusual presentation of multiple atypical cutaneous leiomyomas.

Cook DL, Pugliano-Mauro MA, Schultz ZL.

J Cutan Pathol. 2013 Jun;40(6):564-8. doi: 10.1111/cup.12116. Epub 2013 Mar 29.

PMID:
23550704
22.

Physical properties of biological entities: an introduction to the ontology of physics for biology.

Cook DL, Bookstein FL, Gennari JH.

PLoS One. 2011;6(12):e28708. doi: 10.1371/journal.pone.0028708. Epub 2011 Dec 27.

23.

Colonic ganglioneuromatous polyposis and metastatic adenocarcinoma in the setting of Cowden syndrome: a case report and literature review.

Trufant JW, Greene L, Cook DL, McKinnon W, Greenblatt M, Bosenberg MW.

Hum Pathol. 2012 Apr;43(4):601-4. doi: 10.1016/j.humpath.2011.06.022. Epub 2011 Oct 21. Review.

PMID:
22018627
24.

Integrating systems biology models and biomedical ontologies.

Hoehndorf R, Dumontier M, Gennari JH, Wimalaratne S, de Bono B, Cook DL, Gkoutos GV.

BMC Syst Biol. 2011 Aug 11;5:124. doi: 10.1186/1752-0509-5-124.

25.

Multiple ontologies in action: composite annotations for biosimulation models.

Gennari JH, Neal ML, Galdzicki M, Cook DL.

J Biomed Inform. 2011 Feb;44(1):146-54. doi: 10.1016/j.jbi.2010.06.007. Epub 2010 Jun 30.

26.

Composite annotations: requirements for mapping multiscale data and models to biomedical ontologies.

Cook DL, Mejino JL, Neal ML, Gennari JH.

Conf Proc IEEE Eng Med Biol Soc. 2009;2009:2791-4. doi: 10.1109/IEMBS.2009.5333830.

27.

Melanotic schwannoma arising in association with nevus of Ota: 2 cases suggesting a shared mechanism.

Trufant JW, Brenn T, Fletcher CD, Virata AR, Cook DL, Bosenberg MW.

Am J Dermatopathol. 2009 Dec;31(8):808-13. doi: 10.1097/DAD.0b013e3181accd0e.

PMID:
19786855
28.

Giant cell reparative granuloma of the middle phalanx of the foot: a review and case report.

Cook DL, Rosenthal DC, Shikoff MD.

J Foot Ankle Surg. 2008 Nov-Dec;47(6):589-93. doi: 10.1053/j.jfas.2008.07.001. Review.

PMID:
19239873
29.
30.

Responses of fathead minnows (Pimephales promelas) during life-cycle exposures to pulp mill effluents at four long-term receiving water study sites.

Borton DL, Cook DL, Bradley WK, Philbeck RE, Dubé MG, Brown-Peterson NJ, Streblow WR.

Integr Environ Assess Manag. 2009 Apr;5(2):270-82. doi: 10.1897/IEAM_2008-059.1.

PMID:
19146231
31.

A long-term, multitrophic level study to assess pulp and paper mill effluent effects on aquatic communities in four US receiving waters: characteristics of the study streams, sample sites, mills, and mill effluents.

Hall TJ, Ragsdale RL, Arthurs WJ, Ikoma J, Borton DL, Cook DL.

Integr Environ Assess Manag. 2009 Apr;5(2):199-218. doi: 10.1897/IEAM_2008-054.1.

PMID:
19063588
32.

Mutational analysis of the mitochondrial tRNA genes and flanking regions in umbilical cord tissue from uninfected infants receiving AZT-based therapies for prophylaxis of HIV-1.

Torres SM, Walker DM, McCash CL, Carter MM, Ming J, Cordova EM, Pons RM, Cook DL Jr, Seilkop SK, Copeland WC, Walker VE.

Environ Mol Mutagen. 2009 Jan;50(1):10-26. doi: 10.1002/em.20433.

33.

Bridging biological ontologies and biosimulation: the ontology of physics for biology.

Cook DL, Mejino JL, Neal ML, Gennari JH.

AMIA Annu Symp Proc. 2008 Nov 6:136-40.

34.

Integration of multi-scale biosimulation models via light-weight semantics.

Gennari JH, Neal ML, Carlson BE, Cook DL.

Pac Symp Biocomput. 2008:414-25.

35.
36.

Mutagenicity of zidovudine, lamivudine, and abacavir following in vitro exposure of human lymphoblastoid cells or in utero exposure of CD-1 mice to single agents or drug combinations.

Torres SM, Walker DM, Carter MM, Cook DL Jr, McCash CL, Cordova EM, Olivero OA, Poirier MC, Walker VE.

Environ Mol Mutagen. 2007 Apr-May;48(3-4):224-38.

PMID:
17358033
37.

Relative mutagenic potencies of several nucleoside analogs, alone or in drug pairs, at the HPRT and TK loci of human TK6 lymphoblastoid cells.

Carter MM, Torres SM, Cook DL Jr, McCash CL, Yu M, Walker VE, Walker DM.

Environ Mol Mutagen. 2007 Apr-May;48(3-4):239-47.

PMID:
17358029
38.

The foundational model of anatomy: a template for the symbolic representation of multi-scale physiological functions.

Cook DL, Mejino JL, Rosse C.

Conf Proc IEEE Eng Med Biol Soc. 2004;7:5415-8.

PMID:
17271570
39.

Ontology-based representation of simulation models of physiology.

Rubin DL, Grossman D, Neal M, Cook DL, Bassingthwaighte JB, Musen MA.

AMIA Annu Symp Proc. 2006:664-8.

40.

High precision measurements of non-mass-dependent effects in nickel isotopes in meteoritic metal via multicollector ICPMS.

Cook DL, Wadhwa M, Janney PE, Dauphas N, Clayton RN, Davis AM.

Anal Chem. 2006 Dec 15;78(24):8477-84.

PMID:
17165842
41.

Age-, gender-, and species-dependent mutagenicity in T cells of mice and rats exposed by inhalation to 1,3-butadiene.

Meng Q, Walker DM, McDonald JD, Henderson RF, Carter MM, Cook DL Jr, McCash CL, Torres SM, Bauer MJ, Seilkop SK, Upton PB, Georgieva NI, Boysen G, Swenberg JA, Walker VE.

Chem Biol Interact. 2007 Mar 20;166(1-3):121-31. Epub 2006 Jul 26.

PMID:
16945358
42.

Interleukin-1-induced NF-kappaB recruitment to the oxytocin receptor gene inhibits RNA polymerase II-promoter interactions in cultured human myometrial cells.

Soloff MS, Izban MG, Cook DL Jr, Jeng YJ, Mifflin RC.

Mol Hum Reprod. 2006 Oct;12(10):619-24. Epub 2006 Aug 3.

PMID:
16888077
43.

A strategy for improving and integrating biomedical ontologies.

Rosse C, Kumar A, Mejino JL Jr, Cook DL, Detwiler LT, Smith B.

AMIA Annu Symp Proc. 2005:639-43.

44.

Retrospective identification of ricin in animal tissues following administration by pulmonary and oral routes.

Cook DL, David J, Griffiths GD.

Toxicology. 2006 Jun 1;223(1-2):61-70. Epub 2006 Mar 28.

PMID:
16650517
45.

Mitochondrial toxicity in hearts of CD-1 mice following perinatal exposure to AZT, 3TC, or AZT/3TC in combination.

Chan SS, Santos JH, Meyer JN, Mandavilli BS, Cook DL Jr, McCash CL, Kissling GE, Nyska A, Foley JF, van Houten B, Copeland WC, Walker VE, Witt KL, Bishop JB.

Environ Mol Mutagen. 2007 Apr-May;48(3-4):190-200.

PMID:
16395692
46.

A simple method for assessing muscle function in common marmosets.

Stevens DJ, Hornby RJ, Cook DL, Griffiths GD, Scott EA, Pearce PC.

Lab Anim. 2005 Apr;39(2):162-8.

PMID:
15901359
47.

A T-cell-dependent humoral immune response is preserved during the administration of the nerve agent pre-treatment pyridostigmine bromide in a murine model.

Griffiths GD, Telford G, Hooi DS, Cook DL, Wilkinson LJ, Green CA, Pritchard DI.

Int Immunopharmacol. 2005 Mar;5(3):525-40.

PMID:
15683849
48.

Non-invasive imaging of beta cell mass: a quantitative analysis.

Sweet IR, Cook DL, Lernmark A, Greenbaum CJ, Krohn KA.

Diabetes Technol Ther. 2004 Oct;6(5):652-9.

PMID:
15628819
49.

Evaluation of total phosphorus and total nitrogen methods in pulp mill effluents.

Cook DL, Frum NL.

Water Sci Technol. 2004;50(3):79-86.

PMID:
15461401
50.

Persistence of mitochondrial toxicity in hearts of female B6C3F1 mice exposed in utero to 3'-azido-3'-deoxythymidine.

Walker DM, Poirier MC, Campen MJ, Cook DL Jr, Divi RL, Nagashima K, Lund AK, Cossey PY, Hahn FF, Walker VE.

Cardiovasc Toxicol. 2004;4(2):133-53.

PMID:
15371630

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