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Items: 1 to 50 of 82

1.

A Novel Gene Underlies Bleomycin-Response Variation in Caenorhabditis elegans.

Brady SC, Zdraljevic S, Bisaga KW, Tanny RE, Cook DE, Lee D, Wang Y, Andersen EC.

Genetics. 2019 Aug;212(4):1453-1468. doi: 10.1534/genetics.119.302286. Epub 2019 Jun 6.

PMID:
31171655
2.

Long-read sequencing reveals intra-species tolerance of substantial structural variations and new subtelomere formation in C. elegans.

Kim C, Kim J, Kim S, Cook DE, Evans KS, Andersen EC, Lee J.

Genome Res. 2019 Jun;29(6):1023-1035. doi: 10.1101/gr.246082.118. Epub 2019 May 23.

3.

Plant-necrotroph co-transcriptome networks illuminate a metabolic battlefield.

Zhang W, Corwin JA, Copeland DH, Feusier J, Eshbaugh R, Cook DE, Atwell S, Kliebenstein DJ.

Elife. 2019 May 13;8. pii: e44279. doi: 10.7554/eLife.44279.

4.

Long-Read Annotation: Automated Eukaryotic Genome Annotation Based on Long-Read cDNA Sequencing.

Cook DE, Valle-Inclan JE, Pajoro A, Rovenich H, Thomma BPHJ, Faino L.

Plant Physiol. 2019 Jan;179(1):38-54. doi: 10.1104/pp.18.00848. Epub 2018 Nov 6.

5.

Shared Genomic Regions Underlie Natural Variation in Diverse Toxin Responses.

Evans KS, Brady SC, Bloom JS, Tanny RE, Cook DE, Giuliani SE, Hippleheuser SW, Zamanian M, Andersen EC.

Genetics. 2018 Dec;210(4):1509-1525. doi: 10.1534/genetics.118.301311. Epub 2018 Oct 19.

6.

Technical note: A comparison of alkali treatment methods to improve neutral detergent fiber digestibility of corn stover.

Donnelly DM, de Resende LC, Cook DE, Atalla RH, Combs DK.

J Dairy Sci. 2018 Oct;101(10):9058-9064. doi: 10.3168/jds.2017-14317. Epub 2018 Aug 1.

PMID:
30077448
7.

Targeting microbial pathogens.

Thomma BPHJ, Cook DE.

Science. 2018 Jun 8;360(6393):1070-1071. doi: 10.1126/science.aat9343. No abstract available.

PMID:
29880672
8.

Discovery of genomic intervals that underlie nematode responses to benzimidazoles.

Zamanian M, Cook DE, Zdraljevic S, Brady SC, Lee D, Lee J, Andersen EC.

PLoS Negl Trop Dis. 2018 Mar 30;12(3):e0006368. doi: 10.1371/journal.pntd.0006368. eCollection 2018 Mar.

9.

Natural variation in a single amino acid substitution underlies physiological responses to topoisomerase II poisons.

Zdraljevic S, Strand C, Seidel HS, Cook DE, Doench JG, Andersen EC.

PLoS Genet. 2017 Jul 12;13(7):e1006891. doi: 10.1371/journal.pgen.1006891. eCollection 2017 Jul.

10.

Natural Variation in the Distribution and Abundance of Transposable Elements Across the Caenorhabditis elegans Species.

Laricchia KM, Zdraljevic S, Cook DE, Andersen EC.

Mol Biol Evol. 2017 Sep 1;34(9):2187-2202. doi: 10.1093/molbev/msx155.

11.

VCF-kit: assorted utilities for the variant call format.

Cook DE, Andersen EC.

Bioinformatics. 2017 May 15;33(10):1581-1582. doi: 10.1093/bioinformatics/btx011.

12.

Chromatin Biology Impacts Adaptive Evolution of Filamentous Plant Pathogens.

Seidl MF, Cook DE, Thomma BP.

PLoS Pathog. 2016 Nov 3;12(11):e1005920. doi: 10.1371/journal.ppat.1005920. eCollection 2016 Nov. Review. No abstract available.

13.

CeNDR, the Caenorhabditis elegans natural diversity resource.

Cook DE, Zdraljevic S, Roberts JP, Andersen EC.

Nucleic Acids Res. 2017 Jan 4;45(D1):D650-D657. doi: 10.1093/nar/gkw893. Epub 2016 Oct 3.

14.

The Genetic Basis of Natural Variation in Caenorhabditis elegans Telomere Length.

Cook DE, Zdraljevic S, Tanny RE, Seo B, Riccardi DD, Noble LM, Rockman MV, Alkema MJ, Braendle C, Kammenga JE, Wang J, Kruglyak L, Félix MA, Lee J, Andersen EC.

Genetics. 2016 Sep;204(1):371-83. doi: 10.1534/genetics.116.191148. Epub 2016 Jul 22.

15.

The effects on digestibility and ruminal measures of chemically treated corn stover as a partial replacement for grain in dairy diets.

Cook DE, Combs DK, Doane PH, Cecava MJ, Hall MB.

J Dairy Sci. 2016 Aug;99(8):6342-6351. doi: 10.3168/jds.2015-10403. Epub 2016 Jun 16.

16.

Effects of partial replacement of corn and alfalfa silage with tall fescue hay on total-tract digestibility and lactation performance in dairy cows.

Bender RW, Lopes F, Cook DE, Combs DK.

J Dairy Sci. 2016 Jul;99(7):5436-5444. doi: 10.3168/jds.2015-10222. Epub 2016 May 11.

17.
18.

The effects of calcium hydroxide-treated whole-plant and fractionated corn silage on intake, digestion, and lactation performance in dairy cows.

Cook DE, Bender RW, Shinners KJ, Combs DK.

J Dairy Sci. 2016 Jul;99(7):5385-5393. doi: 10.3168/jds.2015-10402. Epub 2016 May 4.

19.

Mind the gap; seven reasons to close fragmented genome assemblies.

Thomma BPHJ, Seidl MF, Shi-Kunne X, Cook DE, Bolton MD, van Kan JAL, Faino L.

Fungal Genet Biol. 2016 May;90:24-30. doi: 10.1016/j.fgb.2015.08.010. Epub 2015 Sep 2. Review.

PMID:
26342853
20.

Effects of varying dietary ratios of corn silage to alfalfa silage on digestion of neutral detergent fiber in lactating dairy cows.

Lopes F, Cook DE, Combs DK.

J Dairy Sci. 2015 Sep;98(9):6291-303. doi: 10.3168/jds.2014-8662. Epub 2015 Jul 8.

21.

Understanding plant immunity as a surveillance system to detect invasion.

Cook DE, Mesarich CH, Thomma BP.

Annu Rev Phytopathol. 2015;53:541-63. doi: 10.1146/annurev-phyto-080614-120114. Epub 2015 Jun 6. Review.

PMID:
26047564
22.

DYRK1A controls the transition from proliferation to quiescence during lymphoid development by destabilizing Cyclin D3.

Thompson BJ, Bhansali R, Diebold L, Cook DE, Stolzenburg L, Casagrande AS, Besson T, Leblond B, Désiré L, Malinge S, Crispino JD.

J Exp Med. 2015 Jun 1;212(6):953-70. doi: 10.1084/jem.20150002. Epub 2015 May 25.

24.

Distinct Copy Number, Coding Sequence, and Locus Methylation Patterns Underlie Rhg1-Mediated Soybean Resistance to Soybean Cyst Nematode.

Cook DE, Bayless AM, Wang K, Guo X, Song Q, Jiang J, Bent AF.

Plant Physiol. 2014 Jun;165(2):630-647. Epub 2014 Apr 14.

25.

The influence of maternal disease on metabolites measured as part of newborn screening.

Ryckman KK, Shchelochkov OA, Cook DE, Berberich SL, Copeland S, Dagle JM, Murray JC.

J Matern Fetal Neonatal Med. 2013 Sep;26(14):1380-3. doi: 10.3109/14767058.2013.791267. Epub 2013 May 2.

26.

The heritability of metabolic profiles in newborn twins.

Alul FY, Cook DE, Shchelochkov OA, Fleener LG, Berberich SL, Murray JC, Ryckman KK.

Heredity (Edinb). 2013 Mar;110(3):253-8. doi: 10.1038/hdy.2012.75. Epub 2012 Nov 14.

27.

Copy number variation of multiple genes at Rhg1 mediates nematode resistance in soybean.

Cook DE, Lee TG, Guo X, Melito S, Wang K, Bayless AM, Wang J, Hughes TJ, Willis DK, Clemente TE, Diers BW, Jiang J, Hudson ME, Bent AF.

Science. 2012 Nov 30;338(6111):1206-9. doi: 10.1126/science.1228746. Epub 2012 Oct 11.

28.

Clinical and environmental influences on metabolic biomarkers collected for newborn screening.

Ryckman KK, Berberich SL, Shchelochkov OA, Cook DE, Murray JC.

Clin Biochem. 2013 Jan;46(1-2):133-8. doi: 10.1016/j.clinbiochem.2012.09.013. Epub 2012 Sep 23.

29.

Replication of clinical associations with 17-hydroxyprogesterone in preterm newborns.

Ryckman KK, Cook DE, Berberich SL, Shchelochkov OA, Berends SK, Busch T, Dagle JM, Murray JC.

J Pediatr Endocrinol Metab. 2012;25(3-4):301-5.

30.
31.

Gabapentin absorption: effect of mixing with foods of varying macronutrient composition.

Gidal BE, Maly MM, Kowalski JW, Rutecki PA, Pitterle ME, Cook DE.

Ann Pharmacother. 1998 Apr;32(4):405-9.

PMID:
9562133
32.

Suspected trimethoprim/sulfamethoxazole-induced hypoprothrombinemia.

Cook DE, Ponte CD.

J Fam Pract. 1994 Dec;39(6):589-91.

PMID:
7798864
33.

Development of an effective short introductory course in diagnostic radiology.

Messmer JM, Papp KK, Hurwitz J, Cook DE.

Invest Radiol. 1989 Aug;24(8):631-3.

PMID:
2777533
34.

Use of intraoperative ultrasound during hepatic resection in pediatric patients.

Thomas BL, Krummel TM, Parker GA, Benator RM, Brewer WH, Cook DE, Salzberg AM.

J Pediatr Surg. 1989 Jul;24(7):690-2; discussion 692-3.

PMID:
2547054
35.

The caduceus revised.

Cook DE.

J Miss State Med Assoc. 1989 Apr;30(4):128-9. No abstract available.

PMID:
2724336
36.

PL94-142--its potential problems for primary care physicians.

Cook DE, Stein EJ.

Colo Med. 1988 Oct 15;85(19):408-9. No abstract available.

PMID:
2975982
37.

Physicians and school sports physical examination.

Cook DE.

Colo Med. 1988 Sep 15;85(17):373. No abstract available.

PMID:
3180688
38.

A fairy tale.

Cook DE.

J Miss State Med Assoc. 1988 Jul;29(7):201-4. No abstract available.

PMID:
3216386
39.

Evaluation of azotemic patients: diagnostic yield of initial US examination.

Ritchie WW, Vick CW, Glocheski SK, Cook DE.

Radiology. 1988 Apr;167(1):245-7.

PMID:
3279457
40.

Diagnosis of anemia on computed tomography scans of the thorax.

Corcoran HL, Cook DE, Proto AV.

J Comput Tomogr. 1988 Apr;12(2):116-21.

PMID:
3168521
41.
42.

Upper abdominal trauma: pitfalls in CT diagnosis.

Cook DE, Walsh JW, Vick CW, Brewer WH.

Radiology. 1986 Apr;159(1):65-9.

PMID:
3952332
43.

Adenocarcinoma of the cecum. Detection by gallium scintigraphy.

Leonard JC, Cook DE.

Clin Nucl Med. 1985 Jul;10(7):520-1. No abstract available.

PMID:
3861285
44.

Heterotopic bone formation in patients with DISH following total hip replacement.

Bundrick TJ, Cook DE, Resnik CS.

Radiology. 1985 Jun;155(3):595-7.

PMID:
3923552
45.

Alterations in hepatic microsomal drug metabolism and cytochrome P-450 proteins in spontaneously hypertensive rats.

Merrick BA, Davies MH, Cook DE, Holcslaw TL, Schnell RC.

Pharmacology. 1985;30(3):129-35.

PMID:
3975262
47.

Drug metabolism in spontaneously diabetic guinea pigs.

Cook DE, Jackson JD, Past MR, Lang CM, Bullock LP.

Experientia. 1984 Aug 15;40(8):840-1.

PMID:
6381086
48.

Effect of adrenalectomy on the cytochrome P-450 population of diabetic rat liver.

Past MR, Cook DE, Hofert JF.

Horm Metab Res. 1983 Jun;15(6):306. No abstract available.

PMID:
6873879
49.
50.

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