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Effector gene reshuffling involves dispensable mini-chromosomes in the wheat blast fungus.

Peng Z, Oliveira-Garcia E, Lin G, Hu Y, Dalby M, Migeon P, Tang H, Farman M, Cook D, White FF, Valent B, Liu S.

PLoS Genet. 2019 Sep 12;15(9):e1008272. doi: 10.1371/journal.pgen.1008272. eCollection 2019 Sep.


Variation in the practice of discontinuing mechanical ventilation in critically ill adults: study protocol for an international prospective observational study.

Burns KEA, Rizvi L, Cook DJ, Dodek P, Slutsky AS, Jones A, Villar J, Kapadia FN, Gattas DJ, Epstein SK, Meade MO; Canadian Critical Care Trials Group.

BMJ Open. 2019 Sep 8;9(9):e031775. doi: 10.1136/bmjopen-2019-031775.


DARLING: a device for assessing resistance to lodging in grain crops.

Cook DD, de la Chapelle W, Lin TC, Lee SY, Sun W, Robertson DJ.

Plant Methods. 2019 Sep 3;15:102. doi: 10.1186/s13007-019-0488-7. eCollection 2019.


Biodiversity of Convolvulaceous species that contain Ergot Alkaloids, Indole Diterpene Alkaloids, and Swainsonine.

Cook D, Lee ST, Panaccione DG, Leadmon CE, Clay K, Gardner DR.

Biochem Syst Ecol. 2019 Oct;86. pii: 103921. doi: 10.1016/j.bse.2019.103921. Epub 2019 Jul 16.


Visualization methods for differential expression analysis.

Rutter L, Moran Lauter AN, Graham MA, Cook D.

BMC Bioinformatics. 2019 Sep 6;20(1):458. doi: 10.1186/s12859-019-2968-1.


Fostering community hospital research.

Gehrke P, Binnie A, Chan SPT, Cook DJ, Burns KEA, Rewa OG, Herridge M, Tsang JLY.

CMAJ. 2019 Sep 3;191(35):E962-E966. doi: 10.1503/cmaj.190055. No abstract available.


Equity-Specific Effects of Interventions to Promote Physical Activity among Middle-Aged and Older Adults: Development of a Collaborative Equity-Specific Re-Analysis Strategy.

Czwikla G, Boen F, Cook DG, de Jong J, Harris T, Hilz LK, Iliffe S, Morris R, Muellmann S, Peels DA, Pischke CR, Schüz B, Stevens M, van Lenthe FJ, Vanderlinden J, Bolte G.

Int J Environ Res Public Health. 2019 Sep 1;16(17). pii: E3195. doi: 10.3390/ijerph16173195.


Characterisation of high molecular weight hop proanthocyanidins using Analytical Ultracentrifugation.

Gadon A, Linforth R, Harding SE, Cook D.

Sci Rep. 2019 Sep 2;9(1):12650. doi: 10.1038/s41598-019-49171-4.


Management Reasoning: Implications for Health Professions Educators and a Research Agenda.

Cook DA, Durning SJ, Sherbino J, Gruppen LD.

Acad Med. 2019 Sep;94(9):1310-1316. doi: 10.1097/ACM.0000000000002768.


Project management lessons learned from the multicentre CYCLE pilot randomized controlled trial.

McCaskell DS, Molloy AJ, Childerhose L, Costigan FA, Reid JC, McCaughan M, Clarke F, Cook DJ, Rudkowski JC, Farley C, Karachi T, Rochwerg B, Newman A, Fox-Robichaud A, Herridge MS, Lo V, Feltracco D, Burns K, Porteous R, Seely AJE, Ball IM, Seczek A, Kho ME.

Trials. 2019 Aug 28;20(1):532. doi: 10.1186/s13063-019-3634-7.


Longitudinal exposure of English primary care patients to pharmacogenomic drugs: an analysis to inform design of pre-emptive pharmacogenomic testing.

Kimpton JE, Carey IM, Threapleton CJD, Robinson A, Harris T, Cook DG, DeWilde S, Baker EH.

Br J Clin Pharmacol. 2019 Aug 27. doi: 10.1111/bcp.14100. [Epub ahead of print]


Exploring the pathological role of intervertebral disc and facet joint in the development of degenerative scoliosis by biomechanical methods.

Zheng J, Yang Y, Cheng B, Cook D.

Clin Biomech (Bristol, Avon). 2019 Aug 16;70:83-88. doi: 10.1016/j.clinbiomech.2019.08.006. [Epub ahead of print]


Population Selection and Sequencing of Caenorhabditis elegans Wild Isolates Identifies a Region on Chromosome III Affecting Starvation Resistance.

Webster AK, Hung A, Moore BT, Guzman R, Jordan JM, Kaplan REW, Hibshman JD, Tanny RE, Cook DE, Andersen E, Baugh LR.

G3 (Bethesda). 2019 Aug 23. pii: g3.400617.2019. doi: 10.1534/g3.119.400617. [Epub ahead of print]


Context-Aware Delivery of Ecological Momentary Assessment.

Aminikhanghahi S, Schmitter-Edgecombe M, Cook DJ.

IEEE J Biomed Health Inform. 2019 Aug 22. doi: 10.1109/JBHI.2019.2937116. [Epub ahead of print]


Characterising the gut microbiome in veterans with Gulf War Illness: a protocol for a longitudinal, prospective cohort study.

Keating JA, Shaughnessy C, Baubie K, Kates AE, Putman-Buehler N, Watson L, Dominguez N, Watson K, Cook DB, Rabago D, Suen G, Gangnon R, Safdar N.

BMJ Open. 2019 Aug 19;9(8):e031114. doi: 10.1136/bmjopen-2019-031114.


Influence of pain anticipation on brain activity and pain perception in Gulf War Veterans with chronic musculoskeletal pain.

Lindheimer JB, Stegner AJ, Ellingson-Sayen LD, Van Riper SM, Dougherty RJ, Falvo MJ, Cook DB.

Psychophysiology. 2019 Aug 20:e13452. doi: 10.1111/psyp.13452. [Epub ahead of print]


Attentional Avoidance of Historically Relevant, Task-Irrelevant Facial Affect: Past Depression, Interpersonal Characteristics, and Ethnicity.

Bistricky SL, Harper KL, Balderas JC, Cook DM, Rios D, Short MB.

Psychol Rep. 2019 Aug 18:33294119869825. doi: 10.1177/0033294119869825. [Epub ahead of print] No abstract available.


Cost evaluations in health professions education: a systematic review of methods and reporting quality.

Foo J, Cook DA, Walsh K, Golub R, Abdalla ME, Ilic D, Maloney S.

Med Educ. 2019 Aug 11. doi: 10.1111/medu.13936. [Epub ahead of print]


Machine learning in clinical practice: prospects and pitfalls.

Scott IA, Cook D, Coiera EW, Richards B.

Med J Aust. 2019 Sep;211(5):203-205.e1. doi: 10.5694/mja2.50294. Epub 2019 Aug 6. No abstract available.


Oesophageal food bolus obstruction and eosinophilic oesophagitis.

Cook D, Zala A, Bollipo S, Potter MDE, Walker MM, Talley NJ.

Intern Med J. 2019 Aug;49(8):1032-1034. doi: 10.1111/imj.14389.


(Inverse) Agonists of Retinoic Acid-Related Orphan Receptor γ: Regulation of Immune Responses, Inflammation, and Autoimmune Disease.

Jetten AM, Cook DN.

Annu Rev Pharmacol Toxicol. 2019 Aug 6. doi: 10.1146/annurev-pharmtox-010919-023711. [Epub ahead of print]


An Inexpensive, Portable Physical Endoscopic Simulator: Description and Initial Evaluation.

Aljamal Y, Cook DA, Sedlack RE, Kelley SR, Farley DR.

J Surg Res. 2019 Aug 2;243:560-566. doi: 10.1016/j.jss.2019.07.012. [Epub ahead of print]


Adaptive instruction and learner interactivity in online learning: a randomized trial.

Warner DO, Nolan M, Garcia-Marcinkiewicz A, Schultz C, Warner MA, Schroeder DR, Cook DA.

Adv Health Sci Educ Theory Pract. 2019 Aug 1. doi: 10.1007/s10459-019-09907-3. [Epub ahead of print]


Impact of Clinicians' Use of Electronic Knowledge Resources on Clinical and Learning Outcomes: Systematic Review and Meta-Analysis.

Maggio LA, Aakre CA, Del Fiol G, Shellum J, Cook DA.

J Med Internet Res. 2019 Jul 25;21(7):e13315. doi: 10.2196/13315. Review.


Multi-parametric analysis reveals metabolic and vascular effects driving differences in BOLD-based cerebrovascular reactivity associated with a history of sport concussion.

Champagne AA, Coverdale NS, Germuska M, Cook DJ.

Brain Inj. 2019;33(11):1479-1489. doi: 10.1080/02699052.2019.1644375. Epub 2019 Jul 27.


COX2 is Induced in the Ovarian Epithelium During Ovulatory Wound Repair and Promotes Cell Survival.

Carter LE, Cook DP, Collins O, Gamwell LF, Dempster HA, Wong HW, McCloskey CW, Garson K, Vuong NH, Vanderhyden BC.

Biol Reprod. 2019 Jul 26. pii: ioz134. doi: 10.1093/biolre/ioz134. [Epub ahead of print]


The effect of moving to East Village, the former London 2012 Olympic and Paralympic Games Athletes' Village, on physical activity and adiposity (ENABLE London): a cohort study.

Nightingale CM, Limb ES, Ram B, Shankar A, Clary C, Lewis D, Cummins S, Procter D, Cooper AR, Page AS, Ellaway A, Giles-Corti B, Whincup PH, Rudnicka AR, Cook DG, Owen CG.

Lancet Public Health. 2019 Aug;4(8):e421-e430. doi: 10.1016/S2468-2667(19)30133-1. Epub 2019 Jul 22.


Development and validation of a prediction model for fat mass in children and adolescents: meta-analysis using individual participant data.

Hudda MT, Fewtrell MS, Haroun D, Lum S, Williams JE, Wells JCK, Riley RD, Owen CG, Cook DG, Rudnicka AR, Whincup PH, Nightingale CM.

BMJ. 2019 Jul 24;366:l4293. doi: 10.1136/bmj.l4293.


Ergonomics in apiculture: A case study based on inspecting movable frame hives for healthy bee activities.

Fels DI, Blackler A, Cook D, Foth M.

Heliyon. 2019 Jul 8;5(7):e01973. doi: 10.1016/j.heliyon.2019.e01973. eCollection 2019 Jul.


Altered Expression of an FT Cluster Underlies a Major Locus Controlling Domestication-Related Changes to Chickpea Phenology and Growth Habit.

Ortega R, Hecht VFG, Freeman JS, Rubio J, Carrasquilla-Garcia N, Mir RR, Penmetsa RV, Cook DR, Millan T, Weller JL.

Front Plant Sci. 2019 Jul 3;10:824. doi: 10.3389/fpls.2019.00824. eCollection 2019.


Structural Racism and Odds for Infant Mortality Among Infants Born in the United States 2010.

Pabayo R, Ehntholt A, Davis K, Liu SY, Muennig P, Cook DM.

J Racial Ethn Health Disparities. 2019 Jul 15. doi: 10.1007/s40615-019-00612-w. [Epub ahead of print]


Identification of a potent small-molecule inhibitor of bacterial DNA repair that potentiates quinolone antibiotic activity in methicillin-resistant Staphylococcus aureus.

Lim CSQ, Ha KP, Clarke RS, Gavin LA, Cook DT, Hutton JA, Sutherell CL, Edwards AM, Evans LE, Tate EW, Lanyon-Hogg T.

Bioorg Med Chem. 2019 Jun 15:114962. doi: 10.1016/j.bmc.2019.06.025. [Epub ahead of print]


Changes in volumetric and metabolic parameters relate to differences in exposure to sub-concussive head impacts.

Champagne AA, Coverdale NS, Germuska M, Bhogal AA, Cook DJ.

J Cereb Blood Flow Metab. 2019 Jul 15:271678X19862861. doi: 10.1177/0271678X19862861. [Epub ahead of print]


Measurement accuracy and uncertainty in plant biomechanics.

Nelson N, Stubbs CJ, Larson R, Cook DD.

J Exp Bot. 2019 Jul 23;70(14):3649-3658. doi: 10.1093/jxb/erz279.


Global-level population genomics reveals differential effects of geography and phylogeny on horizontal gene transfer in soil bacteria.

Greenlon A, Chang PL, Damtew ZM, Muleta A, Carrasquilla-Garcia N, Kim D, Nguyen HP, Suryawanshi V, Krieg CP, Yadav SK, Patel JS, Mukherjee A, Udupa S, Benjelloun I, Thami-Alami I, Yasin M, Patil B, Singh S, Sarma BK, von Wettberg EJB, Kahraman A, Bukun B, Assefa F, Tesfaye K, Fikre A, Cook DR.

Proc Natl Acad Sci U S A. 2019 Jul 23;116(30):15200-15209. doi: 10.1073/pnas.1900056116. Epub 2019 Jul 8.


Improving End-of-Life Care in the Intensive Care Unit: Clinicians' Experiences with the 3 Wishes Project.

Neville TH, Agarwal N, Swinton M, Phung P, Xu X, Kao Y, Seo J, Granone MC, Hjelmhaug K, Hainje J, Pavlish C, Clarke F, Cook DJ.

J Palliat Med. 2019 Jul 25. doi: 10.1089/jpm.2019.0135. [Epub ahead of print]


Data-informed Intervention Improves Football Technique and Reduces Head Impacts.

Champagne AA, DiStefano V, Boulanger MM, Magee B, Coverdale NS, Gallucci D, Guskiewicz K, Cook DJ.

Med Sci Sports Exerc. 2019 Jun 20. doi: 10.1249/MSS.0000000000002046. [Epub ahead of print]


Diarrhoea: interventions, consequences and epidemiology in the intensive care unit (DICE-ICU): a protocol for a prospective multicentre cohort study.

Dionne JC, Sullivan K, Mbuagbaw L, Takaoka A, Duan EH, Alhazzani W, Devlin JW, Duprey M, Moayyedi P, Armstrong D, Thabane L, Tsang JLY, Jaeschke R, Hamielec C, Karachi T, Cartin-Ceba R, Muscedere J, Alshahrani MSS, Cook DJ.

BMJ Open. 2019 Jun 27;9(6):e028237. doi: 10.1136/bmjopen-2018-028237.


Disease detection at the 48-month exit round of the HPV FOCAL cervical cancer screening trial in women per-protocol eligible for routine screening.

Coldman AJ, van Niekerk D, Krajden M, Smith LW, Cook D, Gondara L, Ceballos K, Quinlan DJ, Lee M, Elwood-Martin R, Gentile L, Peacock S, Stuart GCE, Franco EL, Ogilvie GS.

Int J Cancer. 2019 Jun 27. doi: 10.1002/ijc.32524. [Epub ahead of print]


Effect of pedometer-based walking interventions on long-term health outcomes: Prospective 4-year follow-up of two randomised controlled trials using routine primary care data.

Harris T, Limb ES, Hosking F, Carey I, DeWilde S, Furness C, Wahlich C, Ahmad S, Kerry S, Whincup P, Victor C, Ussher M, Iliffe S, Ekelund U, Fox-Rushby J, Ibison J, Cook DG.

PLoS Med. 2019 Jun 25;16(6):e1002836. doi: 10.1371/journal.pmed.1002836. eCollection 2019 Jun.


What is killing people with hepatitis C virus infection? Analysis of a population-based cohort in Canada.

Krajden M, Cook DA, Wong S, Yu A, Butt ZA, Rossi C, Darvishian M, Alvarez M, Buxton JA, Tyndall M, Janjua NZ.

Int J Drug Policy. 2019 Oct;72:114-122. doi: 10.1016/j.drugpo.2019.06.003. Epub 2019 Jun 20.


Evaluating probiotics for the prevention of ventilator-associated pneumonia: a randomised placebo-controlled multicentre trial protocol and statistical analysis plan for PROSPECT.

Johnstone J, Heels-Ansdell D, Thabane L, Meade M, Marshall J, Lauzier F, Duan EH, Zytaruk N, Lamarche D, Surette M, Cook DJ; PROSPECT Investigators and the Canadian Critical Care Trials Group.

BMJ Open. 2019 Jun 20;9(6):e025228. doi: 10.1136/bmjopen-2018-025228.


Multi-trait analysis of domestication genes in Cicer arietinum - Cicer reticulatum hybrids with a multidimensional approach: Modeling wide crosses for crop improvement.

Shin MG, Bulyntsev SV, Chang PL, Korbu LB, Carrasquila-Garcia N, Vishnyakova MA, Samsonova MG, Cook DR, Nuzhdin SV.

Plant Sci. 2019 Aug;285:122-131. doi: 10.1016/j.plantsci.2019.04.018. Epub 2019 Apr 25.


Ovarian cancer and the evolution of subtype classifications using transcriptional profiling.

Cook DP, Vanderhyden BC.

Biol Reprod. 2019 Jun 11. pii: ioz099. doi: 10.1093/biolre/ioz099. [Epub ahead of print]


Therapeutic suppression of pulmonary neutrophilia and allergic airway hyperresponsiveness by a RORγt inverse agonist.

Whitehead GS, Kang HS, Thomas SY, Medvedev A, Karcz TP, Izumi G, Nakano K, Makarov SS, Nakano H, Jetten AM, Cook DN.

JCI Insight. 2019 Jun 11;5. pii: 125528. doi: 10.1172/jci.insight.125528.


Definitions of post-coronary artery bypass grafting myocardial infarction: variations in incidence and prognostic significance.

Belley-Cote EP, Lamy A, Devereaux PJ, Kavsak P, Lamontagne F, Cook DJ, Kennedy K, Vincent J, Ou Y, Tagarakis G, Whitlock RP.

Eur J Cardiothorac Surg. 2019 Jun 10. pii: ezz161. doi: 10.1093/ejcts/ezz161. [Epub ahead of print]


Imaging spinal cord activity in behaving animals.

Nelson NA, Wang X, Cook D, Carey EM, Nimmerjahn A.

Exp Neurol. 2019 Oct;320:112974. doi: 10.1016/j.expneurol.2019.112974. Epub 2019 Jun 6. Review.


A Novel Gene Underlies Bleomycin-Response Variation in Caenorhabditis elegans.

Brady SC, Zdraljevic S, Bisaga KW, Tanny RE, Cook DE, Lee D, Wang Y, Andersen EC.

Genetics. 2019 Aug;212(4):1453-1468. doi: 10.1534/genetics.119.302286. Epub 2019 Jun 6.


Competencies and Feedback on Internal Medicine Residents' End-of-Rotation Assessments Over Time: Qualitative and Quantitative Analyses.

Tekian A, Park YS, Tilton S, Prunty PF, Abasolo E, Zar F, Cook DA.

Acad Med. 2019 Jun 4. doi: 10.1097/ACM.0000000000002821. [Epub ahead of print]


Barriers and facilitators to clinical information seeking: a systematic review.

Aakre CA, Maggio LA, Fiol GD, Cook DA.

J Am Med Inform Assoc. 2019 May 25. pii: ocz065. doi: 10.1093/jamia/ocz065. [Epub ahead of print]


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