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Examining the clinical learning environment through the architectural avenue.

Nordquist J, Chan MK, Maniate J, Cook D, Kelly C, McDougall A.

Med Teach. 2019 Feb 14:1-5. doi: 10.1080/0142159X.2019.1566603. [Epub ahead of print]


Occurrence and Ear Damage of Helicoverpa zea on Transgenic Bacillus thuringiensis Maize in the Field in Texas, U.S. and Its Susceptibility to Vip3A Protein.

Yang F, González JCS, Williams J, Cook DC, Gilreath RT, Kerns ADL.

Toxins (Basel). 2019 Feb 9;11(2). pii: E102. doi: 10.3390/toxins11020102.


Multiplexing Protein and Gene Level Measurements on a Single Luminex Platform.

Cook DB, McLucas BC, Montoya LA, Brotski CM, Das S, Miholits M, Sebata TH.

Methods. 2019 Feb 8. pii: S1046-2023(18)30177-4. doi: 10.1016/j.ymeth.2019.01.018. [Epub ahead of print]


Boron-Pleuromutilins as Anti-Wolbachia Agents with Potential for Treatment of Onchocerciasis and Lymphatic Filariasis.

Jacobs RT, Lunde CS, Freund YR, Hernandez V, Li X, Xia Y, Carter DS, Berry P, Halladay J, Rock F, Stefanakis R, Easom EE, Plattner JJ, Ford L, Johnston KL, Cook DAN, Clare R, Cassidy A, Myhill L, Tyrer H, Gamble J, Guimaraes AF, Steven A, Lenz F, Ehrens A, Frohberger SJ, Koschel M, Hoerauf A, Hübner MP, McNamara C, Bakowski MA, Turner JD, Taylor MJ, Ward SA.

J Med Chem. 2019 Feb 7. doi: 10.1021/acs.jmedchem.8b01854. [Epub ahead of print]


A multicentre controlled pre-post trial of an implementation science intervention to improve venous thromboembolism prophylaxis in critically ill patients.

Stelfox HT, Brundin-Mather R, Soo A, Parsons Leigh J, Niven DJ, Fiest KM, Doig CJ, Zuege DJ, Kushner B, Clement F, Straus SE, Cook DJ, Bagshaw SM, Sauro KM.

Intensive Care Med. 2019 Feb;45(2):211-222. doi: 10.1007/s00134-019-05532-1. Epub 2019 Feb 1.


A general review of the biomechanics of root anchorage.

Stubbs CJ, Cook DD, Niklas KJ.

J Exp Bot. 2019 Jan 30. doi: 10.1093/jxb/ery451. [Epub ahead of print]


Associations Among Practice Variation, Clinician Characteristics, and Care Algorithm Usage: A Multispecialty Vignette Study.

Cook DA, Pankratz VS, Pencille LJ, Dupras DM, Linderbaum JA, Wilkinson JM.

Am J Med Qual. 2019 Jan 30:1062860618824992. doi: 10.1177/1062860618824992. [Epub ahead of print]


Measuring change in trials of physical activity interventions: a comparison of self-report questionnaire and accelerometry within the PACE-UP trial.

Limb ES, Ahmad S, Cook DG, Kerry SM, Ekelund U, Whincup PH, Victor CR, Iliffe S, Ussher M, Fox-Rushby J, Furness C, Ibison J, DeWilde S, Harris T.

Int J Behav Nutr Phys Act. 2019 Jan 22;16(1):10. doi: 10.1186/s12966-018-0762-5.


Feasibility, Reliability, Responsiveness, and Validity of the Patient-Reported Functional Scale for the Intensive Care Unit: A Pilot Study.

Reid JC, Clarke F, Cook DJ, Molloy A, Rudkowski JC, Stratford P, Kho ME.

J Intensive Care Med. 2019 Jan 22:885066618824534. doi: 10.1177/0885066618824534. [Epub ahead of print]


Paclitaxel Reduces Brain Injury from Repeated Head Trauma in Mice.

Cross DJ, Meabon JS, Cline MM, Richards TL, Stump AJ, Cross CG, Minoshima S, Banks WA, Cook DG.

J Alzheimers Dis. 2019 Jan 16. doi: 10.3233/JAD-180871. [Epub ahead of print]


Endogenous glucocorticoids prevent gastric metaplasia by suppressing spontaneous inflammation.

Busada JT, Ramamoorthy S, Cain DW, Xu X, Cook DN, Cidlowski JA.

J Clin Invest. 2019 Jan 17. pii: 123233. doi: 10.1172/JCI123233. [Epub ahead of print]


Material characterization and selection for 3D-printed spine models.

Hao J, Nangunoori R, Wu YY, Rajaraman M, Cook D, Yu A, Cheng B, Shimada K.

3D Print Med. 2018 Oct 19;4(1):8. doi: 10.1186/s41205-018-0032-9.


Systemic Amyloidosis.

Metzger YC, Cook DL, Holmes TE.

JAMA Dermatol. 2019 Jan 16. doi: 10.1001/jamadermatol.2018.4413. [Epub ahead of print] No abstract available.


Whole-genome sequencing reveals a large deletion in the MITF gene in horses with white spotted coat colour and increased risk of deafness.

Henkel J, Lafayette C, Brooks SA, Martin K, Patterson-Rosa L, Cook D, Jagannathan V, Leeb T.

Anim Genet. 2019 Jan 15. doi: 10.1111/age.12762. [Epub ahead of print]


Benchmarks of Duration and Magnitude of Opioid Consumption After Total Hip and Knee Arthroplasty: A Database Analysis of 69,368 Patients.

Cook DJ, Kaskovich SW, Pirkle SC, Mica MAC, Shi LL, Lee MJ.

J Arthroplasty. 2018 Dec 24. pii: S0883-5403(18)31224-5. doi: 10.1016/j.arth.2018.12.023. [Epub ahead of print]


Measuring the transverse Young's modulus of maize rind and pith tissues.

Stubbs CJ, Sun W, Cook DD.

J Biomech. 2019 Feb 14;84:113-120. doi: 10.1016/j.jbiomech.2018.12.028. Epub 2018 Dec 23.


AWZ1066S, a highly specific anti-Wolbachia drug candidate for a short-course treatment of filariasis.

Hong WD, Benayoud F, Nixon GL, Ford L, Johnston KL, Clare RH, Cassidy A, Cook DAN, Siu A, Shiotani M, Webborn PJH, Kavanagh S, Aljayyoussi G, Murphy E, Steven A, Archer J, Struever D, Frohberger SJ, Ehrens A, Hübner MP, Hoerauf A, Roberts AP, Hubbard ATM, Tate EW, Serwa RA, Leung SC, Qie L, Berry NG, Gusovsky F, Hemingway J, Turner JD, Taylor MJ, Ward SA, O'Neill PM.

Proc Natl Acad Sci U S A. 2019 Jan 22;116(4):1414-1419. doi: 10.1073/pnas.1816585116. Epub 2019 Jan 7.


plyranges: a grammar of genomic data transformation.

Lee S, Cook D, Lawrence M.

Genome Biol. 2019 Jan 4;20(1):4. doi: 10.1186/s13059-018-1597-8.


Vitamin D-modulated dendritic cells delay lethal graft-versus-host disease through induction of regulatory T cells.

Vanherwegen AS, Cook DP, Ferreira GB, Gysemans C, Mathieu C.

J Steroid Biochem Mol Biol. 2018 Dec 31. pii: S0960-0760(18)30607-1. doi: 10.1016/j.jsbmb.2018.12.013. [Epub ahead of print]


Industrial scale high-throughput screening delivers multiple fast acting macrofilaricides.

Clare RH, Bardelle C, Harper P, Hong WD, Börjesson U, Johnston KL, Collier M, Myhill L, Cassidy A, Plant D, Plant H, Clark R, Cook DAN, Steven A, Archer J, McGillan P, Charoensutthivarakul S, Bibby J, Sharma R, Nixon GL, Slatko BE, Cantin L, Wu B, Turner J, Ford L, Rich K, Wigglesworth M, Berry NG, O'Neill PM, Taylor MJ, Ward SA.

Nat Commun. 2019 Jan 2;10(1):11. doi: 10.1038/s41467-018-07826-2.


Screening for hypovitaminosis D: cost-effective or not?

Minisola S, Colangelo L, Cipriani C, Pepe J, Cook DP, Mathieu C.

Eur J Endocrinol. 2019 Mar 1;180(3):D1-D7. doi: 10.1530/EJE-18-0977.


Domestication and Temperature Modulate Gene Expression Signatures and Growth in the Australasian Snapper Chrysophrys auratus.

Wellenreuther M, Le Luyer J, Cook D, Ritchie PA, Bernatchez L.

G3 (Bethesda). 2019 Jan 9;9(1):105-116. doi: 10.1534/g3.118.200647.


Does osteogenic potential of clonal human bone marrow mesenchymal stem/stromal cells correlate with their vascular supportive ability?

Merryweather-Clarke AT, Cook D, Lara BJ, Hua P, Repapi E, Ashley N, Lim SY, Watt SM.

Stem Cell Res Ther. 2018 Dec 19;9(1):351. doi: 10.1186/s13287-018-1095-7.


Fatigue in Gulf War Illness is associated with tonically high activation in the executive control network.

Wylie GR, Genova H, Dobryakova E, DeLuca J, Chiaravalloti N, Falvo M, Cook D.

Neuroimage Clin. 2018 Dec 11:101641. doi: 10.1016/j.nicl.2018.101641. [Epub ahead of print]


Exploring the use of adjusted body mass index thresholds based on equivalent insulin resistance for defining overweight and obesity in UK South Asian children.

Hudda MT, Donin AS, Owen CG, Rudnicka AR, Sattar N, Cook DG, Whincup PH, Nightingale CM.

Int J Obes (Lond). 2018 Dec 13. doi: 10.1038/s41366-018-0279-7. [Epub ahead of print]


Improving the adoption of optimal venous thromboembolism prophylaxis in critically ill patients: A process evaluation of a complex quality improvement initiative.

Sauro KM, Brundin-Mather R, Parsons Leigh J, Niven DJ, Kushner B, Soo A, Cook DJ, Straus S, Doig CJ, Bagshaw S, Stelfox HT.

J Crit Care. 2019 Apr;50:111-117. doi: 10.1016/j.jcrc.2018.11.023. Epub 2018 Nov 29.


Microbial dysbiosis and mortality during mechanical ventilation: a prospective observational study.

Lamarche D, Johnstone J, Zytaruk N, Clarke F, Hand L, Loukov D, Szamosi JC, Rossi L, Schenck LP, Verschoor CP, McDonald E, Meade MO, Marshall JC, Bowdish DME, Karachi T, Heels-Ansdell D, Cook DJ, Surette MG; PROSPECT Investigators; Canadian Critical Care Trials Group; Canadian Critical Care Translational Biology Group.

Respir Res. 2018 Dec 7;19(1):245. doi: 10.1186/s12931-018-0950-5.


An Evaluation of Hair, Oral Fluid, Earwax, and Nasal Mucus as Noninvasive Specimens to Determine Livestock Exposure to Teratogenic Lupine spp.

Lee ST, Stonecipher CA, Dos Santos FC, Pfister JA, Welch KD, Cook D, Green BT, Gardner DR, Panter KE.

J Agric Food Chem. 2018 Dec 7. doi: 10.1021/acs.jafc.8b05673. [Epub ahead of print]


CNB-001, a pleiotropic drug is efficacious in embolized agyrencephalic New Zealand white rabbits and ischemic gyrencephalic cynomolgus monkeys.

Lapchak PA, Boitano PD, Bombien R, Cook DJ, Doyan S, Lara JM, Schubert DR.

Exp Neurol. 2019 Mar;313:98-108. doi: 10.1016/j.expneurol.2018.11.010. Epub 2018 Dec 4.


Effect of blast-related mTBI on the working memory system: a resting state fMRI study.

Pagulayan KF, Petrie EC, Cook DG, Hendrickson RC, Rau H, Reilly M, Mayer C, Meabon JS, Raskind MA, Peskind ER, Kleinhans N.

Brain Imaging Behav. 2018 Dec 5. doi: 10.1007/s11682-018-9987-9. [Epub ahead of print]


Rush desensitization with a single antigen induces subclinical activation of mast cells and protects against bystander challenge in dually sensitized mice.

Killoran KE, Kropp LE, Lindrose AR, Curtis HE, Cook D, Mitre E.

Clin Exp Allergy. 2018 Dec 2. doi: 10.1111/cea.13323. [Epub ahead of print]


Community-Based Activity and Sedentary Patterns Are Associated With Cognitive Performance in Mobility-Limited Older Adults.

Wanigatunga AA, Manini TM, Cook DR, Katula J, Fielding RA, Kramer AF, Verghese J, Rapp SR, Sink KM, King AC, Buford TW, Anton S, Nadkarni N, Jennings JM, Reid K, Espeland MA, Gill TM, Pahor M, Nocera JR.

Front Aging Neurosci. 2018 Nov 15;10:341. doi: 10.3389/fnagi.2018.00341. eCollection 2018.


Vitamin D controls the capacity of human dendritic cells to induce functional regulatory T cells by regulation of glucose metabolism.

Vanherwegen AS, Eelen G, Ferreira GB, Ghesquière B, Cook DP, Nikolic T, Roep B, Carmeliet P, Telang S, Mathieu C, Gysemans C.

J Steroid Biochem Mol Biol. 2019 Mar;187:134-145. doi: 10.1016/j.jsbmb.2018.11.011. Epub 2018 Nov 24.


Stroke Longitudinal Volumetric Measures Correlate with the Behavioral Score in Non-Human Primates.

Ramirez-Garcia G, Harrison KA, Fernandez-Ruiz J, Nashed JY, Cook DJ.

Neuroscience. 2019 Jan 15;397:41-55. doi: 10.1016/j.neuroscience.2018.11.026. Epub 2018 Nov 24.


Influencing Mindsets and Motivation in Procedural Skills Learning: Two Randomized Studies.

Cook DA, Gas BL, Farley DR, Lineberry M, Naik ND, Cardenas Lara FJ, Artino AR Jr.

J Surg Educ. 2018 Nov 22. pii: S1931-7204(18)30274-5. doi: 10.1016/j.jsurg.2018.09.018. [Epub ahead of print]


Porous titanium-coated polyetheretherketone implants exhibit an improved bone-implant interface: an in vitro and in vivo biochemical, biomechanical, and histological study.

Cheng BC, Koduri S, Wing CA, Woolery N, Cook DJ, Spiro RC.

Med Devices (Auckl). 2018 Oct 29;11:391-402. doi: 10.2147/MDER.S180482. eCollection 2018.


Quantifying the Impact of Excluding Insecticide Classes From Cotton Integrated Pest Management Programs in the U.S. Mid-South.

North JH, Gore J, Catchot AL, Cook DR, Dodds DM, Musser FR.

J Econ Entomol. 2019 Feb 12;112(1):341-348. doi: 10.1093/jee/toy339.


Harmonizing semantic annotations for computational models in biology.

Neal ML, König M, Nickerson D, Misirli G, Kalbasi R, Dräger A, Atalag K, Chelliah V, Cooling MT, Cook DL, Crook S, de Alba M, Friedman SH, Garny A, Gennari JH, Gleeson P, Golebiewski M, Hucka M, Juty N, Myers C, Olivier BG, Sauro HM, Scharm M, Snoep JL, Touré V, Wipat A, Wolkenhauer O, Waltemath D.

Brief Bioinform. 2018 Nov 21. doi: 10.1093/bib/bby087. [Epub ahead of print]


Assessment of endophyte-derived tremorgenic compounds in Ipomoea asarifolia using mouse models.

Welch KD, Pfister JA, Cook D, Carriao Dos Santos F, Lee ST.

Toxicon. 2018 Dec 15;156:52-60. doi: 10.1016/j.toxicon.2018.11.008. Epub 2018 Nov 12.


Single-cell RNA-sequencing reveals transcriptional dynamics of estrogen-induced dysplasia in the ovarian surface epithelium.

Vuong NH, Cook DP, Forrest LA, Carter LE, Robineau-Charette P, Kofsky JM, Hodgkinson KM, Vanderhyden BC.

PLoS Genet. 2018 Nov 12;14(11):e1007788. doi: 10.1371/journal.pgen.1007788. eCollection 2018 Nov.


Evaluation of a validated methylation triage signature for human papillomavirus positive women in the HPV FOCAL cervical cancer screening trial.

Cook DA, Krajden M, Brentnall AR, Gondara L, Chan T, Law JH, Smith LW, van Niekerk DJ, Ogilvie GS, Coldman AJ, Warman R, Reuter C, Cuzick J, Lorincz AT.

Int J Cancer. 2018 Nov 9. doi: 10.1002/ijc.31976. [Epub ahead of print]


Long-Read Annotation: Automated Eukaryotic Genome Annotation Based on Long-Read cDNA Sequencing.

Cook DE, Valle-Inclan JE, Pajoro A, Rovenich H, Thomma BPHJ, Faino L.

Plant Physiol. 2019 Jan;179(1):38-54. doi: 10.1104/pp.18.00848. Epub 2018 Nov 6.


Diagnostic vs Management Reasoning-Reply.

Cook DA, Sherbino J, Durning SJ.

JAMA. 2018 Nov 6;320(17):1818-1819. doi: 10.1001/jama.2018.13358. No abstract available.


Comfort with uncertainty: reframing our conceptions of how clinicians navigate complex clinical situations.

Ilgen JS, Eva KW, de Bruin A, Cook DA, Regehr G.

Adv Health Sci Educ Theory Pract. 2018 Nov 2. doi: 10.1007/s10459-018-9859-5. [Epub ahead of print] Review.


Supporting self-regulation in simulation-based education: a randomized experiment of practice schedules and goals.

Cook DA, Aljamal Y, Pankratz VS, Sedlack RE, Farley DR, Brydges R.

Adv Health Sci Educ Theory Pract. 2018 Oct 31. doi: 10.1007/s10459-018-9860-z. [Epub ahead of print]


Influence of Temperature on the Efficacy of Foliar Insecticide Sprays Against Sugarcane Aphid (Hemiptera: Aphididae) Populations in Grain Sorghum.

Etheridge B, Gore J, Catchot AL, Cook DR, Musser FR, Larson EJ.

J Econ Entomol. 2019 Feb 12;112(1):196-200. doi: 10.1093/jee/toy315.


Fork pausing allows centromere DNA loop formation and kinetochore assembly.

Cook DM, Bennett M, Friedman B, Lawrimore J, Yeh E, Bloom K.

Proc Natl Acad Sci U S A. 2018 Nov 13;115(46):11784-11789. doi: 10.1073/pnas.1806791115. Epub 2018 Oct 29.


Electronic Knowledge Resources and Point-of-Care Learning: A Scoping Review.

Aakre CA, Pencille LJ, Sorensen KJ, Shellum JL, Del Fiol G, Maggio LA, Prokop LJ, Cook DA.

Acad Med. 2018 Nov;93(11S Association of American Medical Colleges Learn Serve Lead: Proceedings of the 57th Annual Research in Medical Education Sessions):S60-S67. doi: 10.1097/ACM.0000000000002375.


Inflammation-Induced Citrullinated Glucose-Regulated Protein 78 Elicits Immune Responses in Human Type 1 Diabetes.

Buitinga M, Callebaut A, Marques Câmara Sodré F, Crèvecoeur I, Blahnik-Fagan G, Yang ML, Bugliani M, Arribas-Layton D, Marré M, Cook DP, Waelkens E, Mallone R, Piganelli JD, Marchetti P, Mamula MJ, Derua R, James EA, Mathieu C, Overbergh L.

Diabetes. 2018 Nov;67(11):2337-2348. doi: 10.2337/db18-0295.


Shared Genomic Regions Underlie Natural Variation in Diverse Toxin Responses.

Evans KS, Brady SC, Bloom JS, Tanny RE, Cook DE, Giuliani SE, Hippleheuser SW, Zamanian M, Andersen EC.

Genetics. 2018 Dec;210(4):1509-1525. doi: 10.1534/genetics.118.301311. Epub 2018 Oct 19.

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