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Reproductive cycling in adult baboons (Papio species) that were intrauterine growth restricted at birth implies normal fertility but increased psychosocial stress.

Huber HF, Considine MM, Jenkins S, Li C, Nathanielsz PW.

J Med Primatol. 2018 Jun 29. doi: 10.1111/jmp.12356. [Epub ahead of print]


Corrigendum: Nitric Oxide Enables Germination by a Four-Pronged Attack on ABA-Induced Seed Dormancy.

Signorelli S, Considine MJ.

Front Plant Sci. 2018 May 17;9:654. doi: 10.3389/fpls.2018.00654. eCollection 2018.


Integrated time course omics analysis distinguishes immediate therapeutic response from acquired resistance.

Stein-O'Brien G, Kagohara LT, Li S, Thakar M, Ranaweera R, Ozawa H, Cheng H, Considine M, Schmitz S, Favorov AV, Danilova LV, Califano JA, Izumchenko E, Gaykalova DA, Chung CH, Fertig EJ.

Genome Med. 2018 May 23;10(1):37. doi: 10.1186/s13073-018-0545-2.


Nitric Oxide Enables Germination by a Four-Pronged Attack on ABA-Induced Seed Dormancy.

Signorelli S, Considine MJ.

Front Plant Sci. 2018 Mar 9;9:296. doi: 10.3389/fpls.2018.00296. eCollection 2018. Erratum in: Front Plant Sci. 2018 May 17;9:654.


Splice Expression Variation Analysis (SEVA) for inter-tumor heterogeneity of gene isoform usage in cancer.

Afsari B, Guo T, Considine M, Florea L, Kagohara LT, Stein-O'Brien GL, Kelley D, Flam E, Zambo KD, Ha PK, Geman D, Ochs MF, Califano JA, Gaykalova DA, Favorov AV, Fertig EJ.

Bioinformatics. 2018 Jun 1;34(11):1859-1867. doi: 10.1093/bioinformatics/bty004.


Developmental control of hypoxia during bud burst in grapevine.

Meitha K, Agudelo-Romero P, Signorelli S, Gibbs DJ, Considine JA, Foyer CH, Considine MJ.

Plant Cell Environ. 2018 May;41(5):1154-1170. doi: 10.1111/pce.13141. Epub 2018 Feb 28.


Roles for Light, Energy, and Oxygen in the Fate of Quiescent Axillary Buds.

Signorelli S, Agudelo-Romero P, Meitha K, Foyer CH, Considine MJ.

Plant Physiol. 2018 Feb;176(2):1171-1181. doi: 10.1104/pp.17.01479. Epub 2017 Dec 4. No abstract available.


Flavonoid-Rich Apple Improves Endothelial Function in Individuals at Risk for Cardiovascular Disease: A Randomized Controlled Clinical Trial.

Bondonno NP, Bondonno CP, Blekkenhorst LC, Considine MJ, Maghzal G, Stocker R, Woodman RJ, Ward NC, Hodgson JM, Croft KD.

Mol Nutr Food Res. 2018 Feb;62(3). doi: 10.1002/mnfr.201700674. Epub 2017 Dec 19.


Molecular analysis of high-grade serous ovarian carcinoma with and without associated serous tubal intra-epithelial carcinoma.

Ducie J, Dao F, Considine M, Olvera N, Shaw PA, Kurman RJ, Shih IM, Soslow RA, Cope L, Levine DA.

Nat Commun. 2017 Oct 17;8(1):990. doi: 10.1038/s41467-017-01217-9.


Oxygen, Energy, and Light Signalling Direct Meristem Fate.

Considine MJ.

Trends Plant Sci. 2018 Jan;23(1):1-3. doi: 10.1016/j.tplants.2017.09.013. Epub 2017 Oct 10.


Cell cycle arrest in plants: what distinguishes quiescence, dormancy and differentiated G1?

Velappan Y, Signorelli S, Considine MJ.

Ann Bot. 2017 Oct 17;120(4):495-509. doi: 10.1093/aob/mcx082. Review.


Integrated Analysis of Whole-Genome ChIP-Seq and RNA-Seq Data of Primary Head and Neck Tumor Samples Associates HPV Integration Sites with Open Chromatin Marks.

Kelley DZ, Flam EL, Izumchenko E, Danilova LV, Wulf HA, Guo T, Singman DA, Afsari B, Skaist AM, Considine M, Welch JA, Stavrovskaya E, Bishop JA, Westra WH, Khan Z, Koch WM, Sidransky D, Wheelan SJ, Califano JA, Favorov AV, Fertig EJ, Gaykalova DA.

Cancer Res. 2017 Dec 1;77(23):6538-6550. doi: 10.1158/0008-5472.CAN-17-0833. Epub 2017 Sep 25.


Mitochondrial Respiration and Oxygen Tension.

Shaw DS, Meitha K, Considine MJ, Foyer CH.

Methods Mol Biol. 2017;1670:97-113. doi: 10.1007/978-1-4939-7292-0_11.


A Novel Functional Splice Variant of AKT3 Defined by Analysis of Alternative Splice Expression in HPV-Positive Oropharyngeal Cancers.

Guo T, Sakai A, Afsari B, Considine M, Danilova L, Favorov AV, Yegnasubramanian S, Kelley DZ, Flam E, Ha PK, Khan Z, Wheelan SJ, Gutkind JS, Fertig EJ, Gaykalova DA, Califano J.

Cancer Res. 2017 Oct 1;77(19):5248-5258. doi: 10.1158/0008-5472.CAN-16-3106. Epub 2017 Jul 21.


Nature's pulse power: legumes, food security and climate change.

Considine MJ, Siddique KHM, Foyer CH.

J Exp Bot. 2017 Apr 1;68(8):1815-1818. doi: 10.1093/jxb/erx099. No abstract available.


A decline in female baboon hypothalamo-pituitary-adrenal axis activity anticipates aging.

Yang S, Gerow KG, Huber HF, Considine MM, Li C, Mattern V, Comuzzie AG, Ford SP, Nathanielsz PW.

Aging (Albany NY). 2017 May 9;9(5):1375-1385. doi: 10.18632/aging.101235.


Redox Changes During the Cell Cycle in the Embryonic Root Meristem of Arabidopsis thaliana.

de Simone A, Hubbard R, de la Torre NV, Velappan Y, Wilson M, Considine MJ, Soppe WJJ, Foyer CH.

Antioxid Redox Signal. 2017 Dec 20;27(18):1505-1519. doi: 10.1089/ars.2016.6959. Epub 2017 May 30.


Neglecting legumes has compromised human health and sustainable food production.

Foyer CH, Lam HM, Nguyen HT, Siddique KH, Varshney RK, Colmer TD, Cowling W, Bramley H, Mori TA, Hodgson JM, Cooper JW, Miller AJ, Kunert K, Vorster J, Cullis C, Ozga JA, Wahlqvist ML, Liang Y, Shou H, Shi K, Yu J, Fodor N, Kaiser BN, Wong FL, Valliyodan B, Considine MJ.

Nat Plants. 2016 Aug 2;2:16112. doi: 10.1038/nplants.2016.112.


PatternMarkers & GWCoGAPS for novel data-driven biomarkers via whole transcriptome NMF.

Stein-O'Brien GL, Carey JL, Lee WS, Considine M, Favorov AV, Flam E, Guo T, Li S, Marchionni L, Sherman T, Sivy S, Gaykalova DA, McKay RD, Ochs MF, Colantuoni C, Fertig EJ.

Bioinformatics. 2017 Jun 15;33(12):1892-1894. doi: 10.1093/bioinformatics/btx058.


Learning To Breathe: Developmental Phase Transitions in Oxygen Status.

Considine MJ, Diaz-Vivancos P, Kerchev P, Signorelli S, Agudelo-Romero P, Gibbs DJ, Foyer CH.

Trends Plant Sci. 2017 Feb;22(2):140-153. doi: 10.1016/j.tplants.2016.11.013. Epub 2016 Dec 13. Review.


Tankyrase inhibition promotes a stable human naïve pluripotent state with improved functionality.

Zimmerlin L, Park TS, Huo JS, Verma K, Pather SR, Talbot CC Jr, Agarwal J, Steppan D, Zhang YW, Considine M, Guo H, Zhong X, Gutierrez C, Cope L, Canto-Soler MV, Friedman AD, Baylin SB, Zambidis ET.

Development. 2016 Dec 1;143(23):4368-4380. Epub 2016 Sep 22.


Identification of methylated genes in salivary gland adenoid cystic carcinoma xenografts using global demethylation and methylation microarray screening.

Ling S, Rettig EM, Tan M, Chang X, Wang Z, Brait M, Bishop JA, Fertig EJ, Considine M, Wick MJ, Ha PK.

Int J Oncol. 2016 Jul;49(1):225-34. doi: 10.3892/ijo.2016.3532. Epub 2016 May 18.


On the language and physiology of dormancy and quiescence in plants.

Considine MJ, Considine JA.

J Exp Bot. 2016 May;67(11):3189-203. doi: 10.1093/jxb/erw138. Epub 2016 Apr 6. Review.


Characterization of functionally active gene fusions in human papillomavirus related oropharyngeal squamous cell carcinoma.

Guo T, Gaykalova DA, Considine M, Wheelan S, Pallavajjala A, Bishop JA, Westra WH, Ideker T, Koch WM, Khan Z, Fertig EJ, Califano JA.

Int J Cancer. 2016 Jul 15;139(2):373-82. doi: 10.1002/ijc.30081. Epub 2016 Mar 30.


Whole-Genome Sequencing of Salivary Gland Adenoid Cystic Carcinoma.

Rettig EM, Talbot CC Jr, Sausen M, Jones S, Bishop JA, Wood LD, Tokheim C, Niknafs N, Karchin R, Fertig EJ, Wheelan SJ, Marchionni L, Considine M, Fakhry C, Papadopoulos N, Kinzler KW, Vogelstein B, Ha PK, Agrawal N.

Cancer Prev Res (Phila). 2016 Apr;9(4):265-74. doi: 10.1158/1940-6207.CAPR-15-0316. Epub 2016 Feb 9. Erratum in: Cancer Prev Res (Phila). 2018 Apr;11(4):249.


Unravelling how plants benefit from ROS and NO reactions, while resisting oxidative stress.

Considine MJ, Sandalio LM, Foyer CH.

Ann Bot. 2015 Sep;116(4):469-73.


Epigenetic screening of salivary gland mucoepidermoid carcinoma identifies hypomethylation of CLIC3 as a common alteration.

Wang Z, Ling S, Rettig E, Sobel R, Tan M, Fertig EJ, Considine M, El-Naggar AK, Brait M, Fakhry C, Ha PK.

Oral Oncol. 2015 Dec;51(12):1120-5. doi: 10.1016/j.oraloncology.2015.09.010. Epub 2015 Oct 17.


Spatio-temporal relief from hypoxia and production of reactive oxygen species during bud burst in grapevine (Vitis vinifera).

Meitha K, Konnerup D, Colmer TD, Considine JA, Foyer CH, Considine MJ.

Ann Bot. 2015 Sep;116(4):703-11. doi: 10.1093/aob/mcv123. Epub 2015 Sep 3.


Decreased SMAD4 expression is associated with induction of epithelial-to-mesenchymal transition and cetuximab resistance in head and neck squamous cell carcinoma.

Cheng H, Fertig EJ, Ozawa H, Hatakeyama H, Howard JD, Perez J, Considine M, Thakar M, Ranaweera R, Krigsfeld G, Chung CH.

Cancer Biol Ther. 2015;16(8):1252-8. doi: 10.1080/15384047.2015.1056418. Epub 2015 Jun 5.


Dietary flavonoids and nitrate: effects on nitric oxide and vascular function.

Bondonno CP, Croft KD, Ward N, Considine MJ, Hodgson JM.

Nutr Rev. 2015 Apr;73(4):216-35. doi: 10.1093/nutrit/nuu014. Epub 2015 Mar 24. Review.


NF-κB and stat3 transcription factor signatures differentiate HPV-positive and HPV-negative head and neck squamous cell carcinoma.

Gaykalova DA, Manola JB, Ozawa H, Zizkova V, Morton K, Bishop JA, Sharma R, Zhang C, Michailidi C, Considine M, Tan M, Fertig EJ, Hennessey PT, Ahn J, Koch WM, Westra WH, Khan Z, Chung CH, Ochs MF, Califano JA.

Int J Cancer. 2015 Oct 15;137(8):1879-89. doi: 10.1002/ijc.29558. Epub 2015 Jun 23.


Metabolic responses to sulfur dioxide in grapevine (Vitis vinifera L.): photosynthetic tissues and berries.

Considine MJ, Foyer CH.

Front Plant Sci. 2015 Feb 20;6:60. doi: 10.3389/fpls.2015.00060. eCollection 2015.


Correction to Supplementation of a high-fat diet with chlorogenic acid is associated with insulin resistance and hepatic lipid accumulation in mice.

Mubarak A, Hodgson JM, Considine MJ, Croft KD, Matthews VB.

J Agric Food Chem. 2015 Feb 18;63(6):1882. doi: 10.1021/acs.jafc.5b00621. Epub 2015 Feb 9. No abstract available.


AGA: Interactive pipeline for reproducible genomics analyses.

Considine M, Parker H, Wei Y, Xia X, Cope L, Ochs M, Fertig E.

Version 2. F1000Res. 2015 Jan 28 [revised 2015 Jan 1];4:28. doi: 10.12688/f1000research.6030.1. eCollection 2015.


Antibacterial mouthwash blunts oral nitrate reduction and increases blood pressure in treated hypertensive men and women.

Bondonno CP, Liu AH, Croft KD, Considine MJ, Puddey IB, Woodman RJ, Hodgson JM.

Am J Hypertens. 2015 May;28(5):572-5. doi: 10.1093/ajh/hpu192. Epub 2014 Oct 30.


Short-term effects of nitrate-rich green leafy vegetables on blood pressure and arterial stiffness in individuals with high-normal blood pressure.

Bondonno CP, Liu AH, Croft KD, Ward NC, Yang X, Considine MJ, Puddey IB, Woodman RJ, Hodgson JM.

Free Radic Biol Med. 2014 Dec;77:353-62. doi: 10.1016/j.freeradbiomed.2014.09.021. Epub 2014 Sep 28.


Two clinical phenotypes in polycythemia vera.

Spivak JL, Considine M, Williams DM, Talbot CC Jr, Rogers O, Moliterno AR, Jie C, Ochs MF.

N Engl J Med. 2014 Aug 28;371(9):808-17. doi: 10.1056/NEJMoa1403141.


A 3'-UTR KRAS-variant is associated with cisplatin resistance in patients with recurrent and/or metastatic head and neck squamous cell carcinoma.

Chung CH, Lee JW, Slebos RJ, Howard JD, Perez J, Kang H, Fertig EJ, Considine M, Gilbert J, Murphy BA, Nallur S, Paranjape T, Jordan RC, Garcia J, Burtness B, Forastiere AA, Weidhaas JB.

Ann Oncol. 2014 Nov;25(11):2230-6. doi: 10.1093/annonc/mdu367. Epub 2014 Jul 31. Erratum in: Ann Oncol. 2015 May;26(5):1038-9.


Preserving biological heterogeneity with a permuted surrogate variable analysis for genomics batch correction.

Parker HS, Leek JT, Favorov AV, Considine M, Xia X, Chavan S, Chung CH, Fertig EJ.

Bioinformatics. 2014 Oct;30(19):2757-63. doi: 10.1093/bioinformatics/btu375. Epub 2014 Jun 6.


Outlier Analysis and Top Scoring Pair for Integrated Data Analysis and Biomarker Discovery.

Ochs MF, Farrar JE, Considine M, Wei Y, Meshinchi S, Arceci RJ.

IEEE/ACM Trans Comput Biol Bioinform. 2014 May-Jun;11(3):520-32. doi: 10.1109/TCBB.2013.153.


The sub/supra-optimal temperature-induced inhibition of photosynthesis and oxidative damage in cucumber leaves are alleviated by grafting onto figleaf gourd/luffa rootstocks.

Li H, Wang F, Chen XJ, Shi K, Xia XJ, Considine MJ, Yu JQ, Zhou YH.

Physiol Plant. 2014 Nov;152(3):571-84. doi: 10.1111/ppl.12200. Epub 2014 May 23.


The acute effect of flavonoid-rich apples and nitrate-rich spinach on cognitive performance and mood in healthy men and women.

Bondonno CP, Downey LA, Croft KD, Scholey A, Stough C, Yang X, Considine MJ, Ward NC, Puddey IB, Swinny E, Mubarak A, Hodgson JM.

Food Funct. 2014 May;5(5):849-58. doi: 10.1039/c3fo60590f.


Redox regulation of plant development.

Considine MJ, Foyer CH.

Antioxid Redox Signal. 2014 Sep 20;21(9):1305-26. doi: 10.1089/ars.2013.5665. Epub 2014 Jan 30. Review.


Growth temperature-induced changes in biomass accumulation, photosynthesis and glutathione redox homeostasis as influenced by hydrogen peroxide in cucumber.

Li H, Wang XM, Chen L, Ahammed GJ, Xia XJ, Shi K, Considine MJ, Yu JQ, Zhou YH.

Plant Physiol Biochem. 2013 Oct;71:1-10. doi: 10.1016/j.plaphy.2013.06.018. Epub 2013 Jul 3.


Supplementation of a high-fat diet with chlorogenic acid is associated with insulin resistance and hepatic lipid accumulation in mice.

Mubarak A, Hodgson JM, Considine MJ, Croft KD, Matthews VB.

J Agric Food Chem. 2013 May 8;61(18):4371-8. doi: 10.1021/jf400920x. Epub 2013 Apr 26. Erratum in: J Agric Food Chem. 2015 Feb 18;63(6):1882.


Polyphenol composition of plum selections in relation to total antioxidant capacity.

Mubarak A, Swinny EE, Ching SY, Jacob SR, Lacey K, Hodgson JM, Croft KD, Considine MJ.

J Agric Food Chem. 2012 Oct 17;60(41):10256-62. doi: 10.1021/jf302903k. Epub 2012 Oct 9.


Inhibition of TGF-β enhances the in vivo antitumor efficacy of EGF receptor-targeted therapy.

Bedi A, Chang X, Noonan K, Pham V, Bedi R, Fertig EJ, Considine M, Califano JA, Borrello I, Chung CH, Sidransky D, Ravi R.

Mol Cancer Ther. 2012 Nov;11(11):2429-39. doi: 10.1158/1535-7163.MCT-12-0101-T. Epub 2012 Aug 27.


Acute effects of chlorogenic acid on nitric oxide status, endothelial function, and blood pressure in healthy volunteers: a randomized trial.

Mubarak A, Bondonno CP, Liu AH, Considine MJ, Rich L, Mas E, Croft KD, Hodgson JM.

J Agric Food Chem. 2012 Sep 12;60(36):9130-6. doi: 10.1021/jf303440j. Epub 2012 Sep 4.


Gene expression signatures modulated by epidermal growth factor receptor activation and their relationship to cetuximab resistance in head and neck squamous cell carcinoma.

Fertig EJ, Ren Q, Cheng H, Hatakeyama H, Dicker AP, Rodeck U, Considine M, Ochs MF, Chung CH.

BMC Genomics. 2012 May 1;13:160.


Diversity arrays technology (DArT) markers in apple for genetic linkage maps.

Schouten HJ, van de Weg WE, Carling J, Khan SA, McKay SJ, van Kaauwen MP, Wittenberg AH, Koehorst-van Putten HJ, Noordijk Y, Gao Z, Rees DJ, Van Dyk MM, Jaccoud D, Considine MJ, Kilian A.

Mol Breed. 2012 Mar;29(3):645-660. Epub 2011 May 15.

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