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Items: 27

1.

Genome Sequences of Penicillin-Resistant Bacillus anthracis Strains.

Gargis AS, Lascols C, McLaughlin HP, Conley AB, Hoffmaster AR, Sue D.

Microbiol Resour Announc. 2019 Jan 10;8(2). pii: e01122-18. doi: 10.1128/MRA.01122-18. eCollection 2019 Jan.

2.

Analysis of Whole-Genome Sequences for the Prediction of Penicillin Resistance and β-Lactamase Activity in Bacillus anthracis.

Gargis AS, McLaughlin HP, Conley AB, Lascols C, Michel PA, Gee JE, Marston CK, Kolton CB, Rodriguez-R LM, Hoffmaster AR, Weigel LM, Sue D.

mSystems. 2018 Dec 11;3(6). pii: e00154-18. doi: 10.1128/mSystems.00154-18. eCollection 2018 Nov-Dec.

3.

Genetic ancestry, admixture and health determinants in Latin America.

Norris ET, Wang L, Conley AB, Rishishwar L, Mariño-Ramírez L, Valderrama-Aguirre A, Jordan IK.

BMC Genomics. 2018 Dec 11;19(Suppl 8):861. doi: 10.1186/s12864-018-5195-7.

4.

GlobAl Distribution of GEnetic Traits (GADGET) web server: polygenic trait scores worldwide.

Chande AT, Wang L, Rishishwar L, Conley AB, Norris ET, Valderrama-Aguirre A, Jordan IK.

Nucleic Acids Res. 2018 Jul 2;46(W1):W121-W126. doi: 10.1093/nar/gky415.

5.

Influence of genetic ancestry and socioeconomic status on type 2 diabetes in the diverse Colombian populations of Chocó and Antioquia.

Chande AT, Rowell J, Rishishwar L, Conley AB, Norris ET, Valderrama-Aguirre A, Medina-Rivas MA, Jordan IK.

Sci Rep. 2017 Dec 7;7(1):17127. doi: 10.1038/s41598-017-17380-4.

6.

A Comparative Analysis of Genetic Ancestry and Admixture in the Colombian Populations of Chocó and Medellín.

Conley AB, Rishishwar L, Norris ET, Valderrama-Aguirre A, Mariño-Ramírez L, Medina-Rivas MA, Jordan IK.

G3 (Bethesda). 2017 Oct 5;7(10):3435-3447. doi: 10.1534/g3.117.1118.

7.

Genome-wide map of Apn1 binding sites under oxidative stress in Saccharomyces cerevisiae.

Morris LP, Conley AB, Degtyareva N, Jordan IK, Doetsch PW.

Yeast. 2017 Nov;34(11):447-458. doi: 10.1002/yea.3247. Epub 2017 Sep 26.

8.

Complete Genome Sequences for Three Chromosomes of the Burkholderia stabilis Type Strain (ATCC BAA-67).

Bugrysheva JV, Cherney B, Sue D, Conley AB, Rowe LA, Knipe KM, Frace MA, Loparev VN, Avila JR, Anderson K, Hodge DR, Pillai SP, Weigel LM.

Genome Announc. 2016 Nov 17;4(6). pii: e01294-16. doi: 10.1128/genomeA.01294-16.

9.

Chocó, Colombia: a hotspot of human biodiversity.

Medina-Rivas MA, Norris ET, Rishishwar L, Conley AB, Medrano-Trochez C, Valderrama-Aguirre A, Vannberg FO, Mariño-Ramírez L, Jordan IK.

Rev Biodivers Neotrop. 2016 Jan-Jun;6(1):45-54.

10.

A combined evidence Bayesian method for human ancestry inference applied to Afro-Colombians.

Rishishwar L, Conley AB, Vidakovic B, Jordan IK.

Gene. 2015 Dec 15;574(2):345-51. doi: 10.1016/j.gene.2015.08.015. Epub 2015 Aug 11.

PMID:
26275940
11.

Ancestry, admixture and fitness in Colombian genomes.

Rishishwar L, Conley AB, Wigington CH, Wang L, Valderrama-Aguirre A, Jordan IK.

Sci Rep. 2015 Jul 21;5:12376. doi: 10.1038/srep12376.

12.

Genome Sequences of Vibrio navarrensis, a Potential Human Pathogen.

Gladney LM, Katz LS, Knipe KM, Rowe LA, Conley AB, Rishishwar L, Mariño-Ramírez L, Jordan IK, Tarr CL.

Genome Announc. 2014 Nov 20;2(6). pii: e01188-14. doi: 10.1128/genomeA.01188-14.

13.

Mammalian-wide interspersed repeat (MIR)-derived enhancers and the regulation of human gene expression.

Jjingo D, Conley AB, Wang J, Mariño-Ramírez L, Lunyak VV, Jordan IK.

Mob DNA. 2014 May 5;5:14. doi: 10.1186/1759-8753-5-14. eCollection 2014.

14.

Compound cis-regulatory elements with both boundary and enhancer sequences in the human genome.

Jjingo D, Wang J, Conley AB, Lunyak VV, Jordan IK.

Bioinformatics. 2013 Dec 15;29(24):3109-12. doi: 10.1093/bioinformatics/btt542. Epub 2013 Oct 1.

15.

Origin and evolution of the cystic fibrosis transmembrane regulator protein R domain.

Sebastian A, Rishishwar L, Wang J, Bernard KF, Conley AB, McCarty NA, Jordan IK.

Gene. 2013 Jul 10;523(2):137-46. doi: 10.1016/j.gene.2013.02.050. Epub 2013 Apr 8.

16.

Cell type-specific termination of transcription by transposable element sequences.

Conley AB, Jordan IK.

Mob DNA. 2012 Sep 30;3(1):15. doi: 10.1186/1759-8753-3-15.

17.

Do human transposable element small RNAs serve primarily as genome defenders or genome regulators?

Lee KJ, Conley AB, Lunyak VV, Jordan IK.

Mob Genet Elements. 2012 Jan 1;2(1):19-25.

18.

On the presence and role of human gene-body DNA methylation.

Jjingo D, Conley AB, Yi SV, Lunyak VV, Jordan IK.

Oncotarget. 2012 Apr;3(4):462-74.

19.

Epigenetic regulation of human cis-natural antisense transcripts.

Conley AB, Jordan IK.

Nucleic Acids Res. 2012 Feb;40(4):1438-45. doi: 10.1093/nar/gkr1010.

20.

Transcription factor binding sites are highly enriched within microRNA precursor sequences.

Piriyapongsa J, Jordan IK, Conley AB, Ronan T, Smalheiser NR.

Biol Direct. 2011 Dec 2;6:61. doi: 10.1186/1745-6150-6-61.

21.

Genome sequences for five strains of the emerging pathogen Haemophilus haemolyticus.

Jordan IK, Conley AB, Antonov IV, Arthur RA, Cook ED, Cooper GP, Jones BL, Knipe KM, Lee KJ, Liu X, Mitchell GJ, Pande PR, Petit RA, Qin S, Rajan VN, Sarda S, Sebastian A, Tang S, Thapliyal R, Varghese NJ, Ye T, Katz LS, Wang X, Rowe L, Frace M, Mayer LW.

J Bacteriol. 2011 Oct;193(20):5879-80. doi: 10.1128/JB.05863-11.

22.

Neisseria Base: a comparative genomics database for Neisseria meningitidis.

Katz LS, Humphrey JC, Conley AB, Nelakuditi V, Kislyuk AO, Agrawal S, Jayaraman P, Harcourt BH, Olsen-Rasmussen MA, Frace M, Sharma NV, Mayer LW, Jordan IK.

Database (Oxford). 2011 Sep 18;2011:bar035. doi: 10.1093/database/bar035. Print 2011.

23.

Epigenetic regulation of transposable element derived human gene promoters.

Huda A, Bowen NJ, Conley AB, Jordan IK.

Gene. 2011 Apr 1;475(1):39-48. doi: 10.1016/j.gene.2010.12.010. Epub 2011 Jan 6.

PMID:
21215797
24.

Identification of transcription factor binding sites derived from transposable element sequences using ChIP-seq.

Conley AB, Jordan IK.

Methods Mol Biol. 2010;674:225-40. doi: 10.1007/978-1-60761-854-6_14.

PMID:
20827595
25.

A computational genomics pipeline for prokaryotic sequencing projects.

Kislyuk AO, Katz LS, Agrawal S, Hagen MS, Conley AB, Jayaraman P, Nelakuditi V, Humphrey JC, Sammons SA, Govil D, Mair RD, Tatti KM, Tondella ML, Harcourt BH, Mayer LW, Jordan IK.

Bioinformatics. 2010 Aug 1;26(15):1819-26. doi: 10.1093/bioinformatics/btq284. Epub 2010 Jun 2.

26.

Retroviral promoters in the human genome.

Conley AB, Piriyapongsa J, Jordan IK.

Bioinformatics. 2008 Jul 15;24(14):1563-7. doi: 10.1093/bioinformatics/btn243. Epub 2008 Jun 5.

PMID:
18535086
27.

Human cis natural antisense transcripts initiated by transposable elements.

Conley AB, Miller WJ, Jordan IK.

Trends Genet. 2008 Feb;24(2):53-6. doi: 10.1016/j.tig.2007.11.008. Epub 2008 Jan 14.

PMID:
18192066

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