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Items: 15

1.

Topological Data Analysis as a Morphometric Method: Using Persistent Homology to Demarcate a Leaf Morphospace.

Li M, An H, Angelovici R, Bagaza C, Batushansky A, Clark L, Coneva V, Donoghue MJ, Edwards E, Fajardo D, Fang H, Frank MH, Gallaher T, Gebken S, Hill T, Jansky S, Kaur B, Klahs PC, Klein LL, Kuraparthy V, Londo J, Migicovsky Z, Miller A, Mohn R, Myles S, Otoni WC, Pires JC, Rieffer E, Schmerler S, Spriggs E, Topp CN, Van Deynze A, Zhang K, Zhu L, Zink BM, Chitwood DH.

Front Plant Sci. 2018 Apr 25;9:553. doi: 10.3389/fpls.2018.00553. eCollection 2018.

2.

The Persistent Homology Mathematical Framework Provides Enhanced Genotype-to-Phenotype Associations for Plant Morphology.

Li M, Frank MH, Coneva V, Mio W, Chitwood DH, Topp CN.

Plant Physiol. 2018 Aug;177(4):1382-1395. doi: 10.1104/pp.18.00104. Epub 2018 Jun 5.

3.

Genetic and Developmental Basis for Increased Leaf Thickness in the Arabidopsis Cvi Ecotype.

Coneva V, Chitwood DH.

Front Plant Sci. 2018 Mar 14;9:322. doi: 10.3389/fpls.2018.00322. eCollection 2018.

4.

Genetic Architecture and Molecular Networks Underlying Leaf Thickness in Desert-Adapted Tomato Solanum pennellii.

Coneva V, Frank MH, Balaguer MAL, Li M, Sozzani R, Chitwood DH.

Plant Physiol. 2017 Sep;175(1):376-391. doi: 10.1104/pp.17.00790. Epub 2017 Aug 9.

5.

Morphological Plant Modeling: Unleashing Geometric and Topological Potential within the Plant Sciences.

Bucksch A, Atta-Boateng A, Azihou AF, Battogtokh D, Baumgartner A, Binder BM, Braybrook SA, Chang C, Coneva V, DeWitt TJ, Fletcher AG, Gehan MA, Diaz-Martinez DH, Hong L, Iyer-Pascuzzi AS, Klein LL, Leiboff S, Li M, Lynch JP, Maizel A, Maloof JN, Markelz RJC, Martinez CC, Miller LA, Mio W, Palubicki W, Poorter H, Pradal C, Price CA, Puttonen E, Reese JB, Rellán-Álvarez R, Spalding EP, Sparks EE, Topp CN, Williams JH, Chitwood DH.

Front Plant Sci. 2017 Jun 9;8:900. doi: 10.3389/fpls.2017.00900. eCollection 2017. Review.

6.

Modifications to a LATE MERISTEM IDENTITY1 gene are responsible for the major leaf shapes of Upland cotton (Gossypium hirsutum L.).

Andres RJ, Coneva V, Frank MH, Tuttle JR, Samayoa LF, Han SW, Kaur B, Zhu L, Fang H, Bowman DT, Rojas-Pierce M, Haigler CH, Jones DC, Holland JB, Chitwood DH, Kuraparthy V.

Proc Natl Acad Sci U S A. 2017 Jan 3;114(1):E57-E66. doi: 10.1073/pnas.1613593114. Epub 2016 Dec 20.

7.

OsPIN5b modulates rice (Oryza sativa) plant architecture and yield by changing auxin homeostasis, transport and distribution.

Lu G, Coneva V, Casaretto JA, Ying S, Mahmood K, Liu F, Nambara E, Bi YM, Rothstein SJ.

Plant J. 2015 Sep;83(5):913-25. doi: 10.1111/tpj.12939.

8.

Plant architecture without multicellularity: quandaries over patterning and the soma-germline divide in siphonous algae.

Coneva V, Chitwood DH.

Front Plant Sci. 2015 Apr 24;6:287. doi: 10.3389/fpls.2015.00287. eCollection 2015.

9.

Metabolic and co-expression network-based analyses associated with nitrate response in rice.

Coneva V, Simopoulos C, Casaretto JA, El-Kereamy A, Guevara DR, Cohn J, Zhu T, Guo L, Alexander DC, Bi YM, McNicholas PD, Rothstein SJ.

BMC Genomics. 2014 Dec 3;15:1056. doi: 10.1186/1471-2164-15-1056.

10.

The challenges of commercializing second-generation transgenic crop traits necessitate the development of international public sector research infrastructure.

Rothstein SJ, Bi YM, Coneva V, Han M, Good A.

J Exp Bot. 2014 Oct;65(19):5673-82. doi: 10.1093/jxb/eru236. Epub 2014 Jun 19. Review.

PMID:
24948680
11.

Transcript and metabolite signature of maize source leaves suggests a link between transitory starch to sucrose balance and the autonomous floral transition.

Coneva V, Guevara D, Rothstein SJ, Colasanti J.

J Exp Bot. 2012 Sep;63(14):5079-92. doi: 10.1093/jxb/ers158. Epub 2012 Jul 12.

12.

ZCN8 encodes a potential orthologue of Arabidopsis FT florigen that integrates both endogenous and photoperiod flowering signals in maize.

Lazakis CM, Coneva V, Colasanti J.

J Exp Bot. 2011 Oct;62(14):4833-42. doi: 10.1093/jxb/err129. Epub 2011 Jul 5.

13.

Mechanisms of floral induction in grasses: something borrowed, something new.

Colasanti J, Coneva V.

Plant Physiol. 2009 Jan;149(1):56-62. doi: 10.1104/pp.108.130500. No abstract available.

14.
15.

The maize INDETERMINATE1 flowering time regulator defines a highly conserved zinc finger protein family in higher plants.

Colasanti J, Tremblay R, Wong AY, Coneva V, Kozaki A, Mable BK.

BMC Genomics. 2006 Jun 19;7:158.

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