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Items: 45

1.

Metagenomic and lipid analyses reveal a diel cycle in a hypersaline microbial ecosystem.

Andrade K, Logemann J, Heidelberg KB, Emerson JB, Comolli LR, Hug LA, Probst AJ, Keillar A, Thomas BC, Miller CS, Allen EE, Moreau JW, Brocks JJ, Banfield JF.

ISME J. 2015 Dec;9(12):2697-711. doi: 10.1038/ismej.2015.66. Epub 2015 Apr 28.

2.

Diverse uncultivated ultra-small bacterial cells in groundwater.

Luef B, Frischkorn KR, Wrighton KC, Holman HY, Birarda G, Thomas BC, Singh A, Williams KH, Siegerist CE, Tringe SG, Downing KH, Comolli LR, Banfield JF.

Nat Commun. 2015 Feb 27;6:6372. doi: 10.1038/ncomms7372.

PMID:
25721682
3.

Intra- and inter-species interactions in microbial communities.

Comolli LR.

Front Microbiol. 2014 Nov 24;5:629. doi: 10.3389/fmicb.2014.00629. eCollection 2014. No abstract available.

4.

Impacts of ionic strength on three-dimensional nanoparticle aggregate structure and consequences for environmental transport and deposition.

Legg BA, Zhu M, Comolli LR, Gilbert B, Banfield JF.

Environ Sci Technol. 2014 Dec 2;48(23):13703-10. doi: 10.1021/es502654q. Epub 2014 Nov 19.

PMID:
25380400
5.

Osmotically-driven transport in carbon nanotube porins.

Kim K, Geng J, Tunuguntla R, Comolli LR, Grigoropoulos CP, Ajo-Franklin CM, Noy A.

Nano Lett. 2014 Dec 10;14(12):7051-6. doi: 10.1021/nl5034446. Epub 2014 Nov 5.

PMID:
25372973
6.

Community transcriptomics reveals unexpected high microbial diversity in acidophilic biofilm communities.

Aliaga Goltsman DS, Comolli LR, Thomas BC, Banfield JF.

ISME J. 2015 Mar 17;9(4):1014-23. doi: 10.1038/ismej.2014.200.

7.

Stochastic transport through carbon nanotubes in lipid bilayers and live cell membranes.

Geng J, Kim K, Zhang J, Escalada A, Tunuguntla R, Comolli LR, Allen FI, Shnyrova AV, Cho KR, Munoz D, Wang YM, Grigoropoulos CP, Ajo-Franklin CM, Frolov VA, Noy A.

Nature. 2014 Oct 30;514(7524):612-5. doi: 10.1038/nature13817.

PMID:
25355362
8.

Emergence of microbial networks as response to hostile environments.

Madeo D, Comolli LR, Mocenni C.

Front Microbiol. 2014 Aug 19;5:407. doi: 10.3389/fmicb.2014.00407. eCollection 2014.

9.

Inter-species interconnections in acid mine drainage microbial communities.

Comolli LR, Banfield JF.

Front Microbiol. 2014 Jul 25;5:367. doi: 10.3389/fmicb.2014.00367. eCollection 2014.

10.

Evidence of Geobacter-associated phage in a uranium-contaminated aquifer.

Holmes DE, Giloteaux L, Chaurasia AK, Williams KH, Luef B, Wilkins MJ, Wrighton KC, Thompson CA, Comolli LR, Lovley DR.

ISME J. 2015 Feb;9(2):333-46. doi: 10.1038/ismej.2014.128. Epub 2014 Aug 1.

11.

Determination of the three-dimensional structure of ferrihydrite nanoparticle aggregates.

Legg BA, Zhu M, Comolli LR, Gilbert B, Banfield JF.

Langmuir. 2014 Aug 26;30(33):9931-40. doi: 10.1021/la502128d. Epub 2014 Aug 15.

PMID:
25079430
12.

Oligomerization and higher-order assembly contribute to sub-cellular localization of a bacterial scaffold.

Bowman GR, Perez AM, Ptacin JL, Ighodaro E, Folta-Stogniew E, Comolli LR, Shapiro L.

Mol Microbiol. 2013 Nov;90(4):776-95. doi: 10.1111/mmi.12398. Epub 2013 Oct 7.

13.

U(VI) reduction by diverse outer surface c-type cytochromes of Geobacter sulfurreducens.

Orellana R, Leavitt JJ, Comolli LR, Csencsits R, Janot N, Flanagan KA, Gray AS, Leang C, Izallalen M, Mester T, Lovley DR.

Appl Environ Microbiol. 2013 Oct;79(20):6369-74. doi: 10.1128/AEM.02551-13. Epub 2013 Aug 9.

14.

Comparative genomics in acid mine drainage biofilm communities reveals metabolic and structural differentiation of co-occurring archaea.

Yelton AP, Comolli LR, Justice NB, Castelle C, Denef VJ, Thomas BC, Banfield JF.

BMC Genomics. 2013 Jul 17;14:485. doi: 10.1186/1471-2164-14-485.

15.

Self-assembly of "S-bilayers", a step toward expanding the dimensionality of S-layer assemblies.

Shin SH, Comolli LR, Tscheliessnig R, Wang C, Nam KT, Hexemer A, Siegerist CE, De Yoreo JJ, Bertozzi CR.

ACS Nano. 2013 Jun 25;7(6):4946-53. doi: 10.1021/nn400263j. Epub 2013 Jun 3.

PMID:
23705800
16.

Conformational transitions at an S-layer growing boundary resolved by cryo-TEM.

Comolli LR, Siegerist CE, Shin SH, Bertozzi C, Regan W, Zettl A, De Yoreo J.

Angew Chem Int Ed Engl. 2013 Apr 26;52(18):4829-32. doi: 10.1002/anie.201300543. Epub 2013 Apr 5. No abstract available.

PMID:
23564404
17.

Iron-reducing bacteria accumulate ferric oxyhydroxide nanoparticle aggregates that may support planktonic growth.

Luef B, Fakra SC, Csencsits R, Wrighton KC, Williams KH, Wilkins MJ, Downing KH, Long PE, Comolli LR, Banfield JF.

ISME J. 2013 Feb;7(2):338-50. doi: 10.1038/ismej.2012.103. Epub 2012 Oct 4.

18.

Direct observation of kinetic traps associated with structural transformations leading to multiple pathways of S-layer assembly.

Shin SH, Chung S, Sanii B, Comolli LR, Bertozzi CR, De Yoreo JJ.

Proc Natl Acad Sci U S A. 2012 Aug 7;109(32):12968-73. doi: 10.1073/pnas.1201504109. Epub 2012 Jul 20.

19.

Correlative microscopy for phylogenetic and ultrastructural characterization of microbial communities.

Knierim B, Luef B, Wilmes P, Webb RI, Auer M, Comolli LR, Banfield JF.

Environ Microbiol Rep. 2012 Feb;4(1):36-41. doi: 10.1111/j.1758-2229.2011.00275.x. Epub 2011 Aug 22.

20.

Removing high contrast artifacts via digital inpainting in cryo-electron tomography: an application of compressed sensing.

Song K, Comolli LR, Horowitz M.

J Struct Biol. 2012 May;178(2):108-20. doi: 10.1016/j.jsb.2012.01.003. Epub 2012 Jan 10.

PMID:
22248454
21.

A portable cryo-plunger for on-site intact cryogenic microscopy sample preparation in natural environments.

Comolli LR, Duarte R, Baum D, Luef B, Downing KH, Larson DM, Csencsits R, Banfield JF.

Microsc Res Tech. 2012 Jun;75(6):829-36. doi: 10.1002/jemt.22001. Epub 2011 Dec 30.

22.

Mariprofundus ferrooxydans PV-1 the first genome of a marine Fe(II) oxidizing Zetaproteobacterium.

Singer E, Emerson D, Webb EA, Barco RA, Kuenen JG, Nelson WC, Chan CS, Comolli LR, Ferriera S, Johnson J, Heidelberg JF, Edwards KJ.

PLoS One. 2011;6(9):e25386. doi: 10.1371/journal.pone.0025386. Epub 2011 Sep 23.

23.

High-resolution 2D and 3D cryo-TEM reveals structural adaptations of two stalk-forming bacteria to an Fe-oxidizing lifestyle.

Comolli LR, Luef B, Chan CS.

Environ Microbiol. 2011 Nov;13(11):2915-29. doi: 10.1111/j.1462-2920.2011.02567.x. Epub 2011 Sep 5.

PMID:
21895918
24.

Analysis of the intact surface layer of Caulobacter crescentus by cryo-electron tomography.

Amat F, Comolli LR, Nomellini JF, Moussavi F, Downing KH, Smit J, Horowitz M.

J Bacteriol. 2010 Nov;192(22):5855-65. doi: 10.1128/JB.00747-10. Epub 2010 Sep 10.

25.

The caulobacter Tol-Pal complex is essential for outer membrane integrity and the positioning of a polar localization factor.

Yeh YC, Comolli LR, Downing KH, Shapiro L, McAdams HH.

J Bacteriol. 2010 Oct;192(19):4847-58. doi: 10.1128/JB.00607-10. Epub 2010 Aug 6.

26.

A spindle-like apparatus guides bacterial chromosome segregation.

Ptacin JL, Lee SF, Garner EC, Toro E, Eckart M, Comolli LR, Moerner WE, Shapiro L.

Nat Cell Biol. 2010 Aug;12(8):791-8. doi: 10.1038/ncb2083. Epub 2010 Jul 25.

27.

Subtomogram alignment by adaptive Fourier coefficient thresholding.

Amat F, Comolli LR, Moussavi F, Smit J, Downing KH, Horowitz M.

J Struct Biol. 2010 Sep;171(3):332-44. doi: 10.1016/j.jsb.2010.05.013. Epub 2010 Jun 1.

28.

DipM links peptidoglycan remodelling to outer membrane organization in Caulobacter.

Goley ED, Comolli LR, Fero KE, Downing KH, Shapiro L.

Mol Microbiol. 2010 Jul 1;77(1):56-73. doi: 10.1111/j.1365-2958.2010.07222.x. Epub 2010 May 24.

29.

Enigmatic, ultrasmall, uncultivated Archaea.

Baker BJ, Comolli LR, Dick GJ, Hauser LJ, Hyatt D, Dill BD, Land ML, Verberkmoes NC, Hettich RL, Banfield JF.

Proc Natl Acad Sci U S A. 2010 May 11;107(19):8806-11. doi: 10.1073/pnas.0914470107. Epub 2010 Apr 26.

30.

Caulobacter PopZ forms a polar subdomain dictating sequential changes in pole composition and function.

Bowman GR, Comolli LR, Gaietta GM, Fero M, Hong SH, Jones Y, Lee JH, Downing KH, Ellisman MH, McAdams HH, Shapiro L.

Mol Microbiol. 2010 Apr;76(1):173-89. doi: 10.1111/j.1365-2958.2010.07088.x. Epub 2010 Feb 10.

31.

3D segmentation of cell boundaries from whole cell cryogenic electron tomography volumes.

Moussavi F, Heitz G, Amat F, Comolli LR, Koller D, Horowitz M.

J Struct Biol. 2010 Apr;170(1):134-45. doi: 10.1016/j.jsb.2009.12.015. Epub 2009 Dec 24.

PMID:
20035877
32.

Real-time molecular monitoring of chemical environment in obligate anaerobes during oxygen adaptive response.

Holman HY, Wozei E, Lin Z, Comolli LR, Ball DA, Borglin S, Fields MW, Hazen TC, Downing KH.

Proc Natl Acad Sci U S A. 2009 Aug 4;106(31):12599-604. doi: 10.1073/pnas.0902070106. Epub 2009 Jun 16.

33.

Three-dimensional analysis of the structure and ecology of a novel, ultra-small archaeon.

Comolli LR, Baker BJ, Downing KH, Siegerist CE, Banfield JF.

ISME J. 2009 Feb;3(2):159-67. doi: 10.1038/ismej.2008.99. Epub 2008 Oct 23.

PMID:
18946497
34.

A polymeric protein anchors the chromosomal origin/ParB complex at a bacterial cell pole.

Bowman GR, Comolli LR, Zhu J, Eckart M, Koenig M, Downing KH, Moerner WE, Earnest T, Shapiro L.

Cell. 2008 Sep 19;134(6):945-55. doi: 10.1016/j.cell.2008.07.015.

35.

Three-dimensional architecture of the bacteriophage phi29 packaged genome and elucidation of its packaging process.

Comolli LR, Spakowitz AJ, Siegerist CE, Jardine PJ, Grimes S, Anderson DL, Bustamante C, Downing KH.

Virology. 2008 Feb 20;371(2):267-77. Epub 2007 Nov 14.

36.

Markov random field based automatic image alignment for electron tomography.

Amat F, Moussavi F, Comolli LR, Elidan G, Downing KH, Horowitz M.

J Struct Biol. 2008 Mar;161(3):260-75. Epub 2007 Jul 28.

PMID:
17855124
37.
38.

Novel crystal form of the ColE1 Rom protein.

Jang SB, Jeong MS, Carter RJ, Holbrook EL, Comolli LR, Holbrook SR.

Acta Crystallogr D Biol Crystallogr. 2006 Jun;62(Pt 6):619-27. Epub 2006 May 12.

PMID:
16699189
39.

Oligomerization states of the association domain and the holoenyzme of Ca2+/CaM kinase II.

Rosenberg OS, Deindl S, Comolli LR, Hoelz A, Downing KH, Nairn AC, Kuriyan J.

FEBS J. 2006 Feb;273(4):682-94.

40.

Distinct constrictive processes, separated in time and space, divide caulobacter inner and outer membranes.

Judd EM, Comolli LR, Chen JC, Downing KH, Moerner WE, McAdams HH.

J Bacteriol. 2005 Oct;187(20):6874-82.

41.

Dose tolerance at helium and nitrogen temperatures for whole cell electron tomography.

Comolli LR, Downing KH.

J Struct Biol. 2005 Dec;152(3):149-56. Epub 2005 Sep 13.

PMID:
16198601
42.

A molecular switch underlies a human telomerase disease.

Comolli LR, Smirnov I, Xu L, Blackburn EH, James TL.

Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16998-7003. Epub 2002 Dec 13.

43.

NMR structure of the 3' stem-loop from human U4 snRNA.

Comolli LR, Ulyanov NB, Soto AM, Marky LA, James TL, Gmeiner WH.

Nucleic Acids Res. 2002 Oct 15;30(20):4371-9.

44.

Mapping of a protein-RNA kissing hairpin interface: Rom and Tar-Tar*.

Comolli LR, Pelton JG, Tinoco I Jr.

Nucleic Acids Res. 1998 Oct 15;26(20):4688-95.

45.

Sequence specific 1HN, 15N, 1H alpha, 13C alpha, and 13C beta assignments for RNA-1 modulator protein ROM.

Pelton JG, Comolli LR.

J Biomol NMR. 1998 May;11(4):463-4. No abstract available.

PMID:
9691290

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