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Items: 33

1.

Selective inactivation of hypomethylating agents by SAMHD1 provides a rationale for therapeutic stratification in AML.

Oellerich T, Schneider C, Thomas D, Knecht KM, Buzovetsky O, Kaderali L, Schliemann C, Bohnenberger H, Angenendt L, Hartmann W, Wardelmann E, Rothenburger T, Mohr S, Scheich S, Comoglio F, Wilke A, Ströbel P, Serve H, Michaelis M, Ferreirós N, Geisslinger G, Xiong Y, Keppler OT, Cinatl J Jr.

Nat Commun. 2019 Aug 2;10(1):3475. doi: 10.1038/s41467-019-11413-4.

2.

Dissection of acute stimulus-inducible nucleosome remodeling in mammalian cells.

Comoglio F, Simonatto M, Polletti S, Liu X, Smale ST, Barozzi I, Natoli G.

Genes Dev. 2019 Sep 1;33(17-18):1159-1174. doi: 10.1101/gad.326348.119. Epub 2019 Aug 1.

3.

High-throughput identification of human SNPs affecting regulatory element activity.

van Arensbergen J, Pagie L, FitzPatrick VD, de Haas M, Baltissen MP, Comoglio F, van der Weide RH, Teunissen H, Võsa U, Franke L, de Wit E, Vermeulen M, Bussemaker HJ, van Steensel B.

Nat Genet. 2019 Jul;51(7):1160-1169. doi: 10.1038/s41588-019-0455-2. Epub 2019 Jun 28.

4.

Promoter-Intrinsic and Local Chromatin Features Determine Gene Repression in LADs.

Leemans C, van der Zwalm MCH, Brueckner L, Comoglio F, van Schaik T, Pagie L, van Arensbergen J, van Steensel B.

Cell. 2019 May 2;177(4):852-864.e14. doi: 10.1016/j.cell.2019.03.009. Epub 2019 Apr 11.

5.

Comparative proteomics reveals a diagnostic signature for pulmonary head-and-neck cancer metastasis.

Bohnenberger H, Kaderali L, Ströbel P, Yepes D, Plessmann U, Dharia NV, Yao S, Heydt C, Merkelbach-Bruse S, Emmert A, Hoffmann J, Bodemeyer J, Reuter-Jessen K, Lois AM, Dröge LH, Baumeister P, Walz C, Biggemann L, Walter R, Häupl B, Comoglio F, Pan KT, Scheich S, Lenz C, Küffer S, Bremmer F, Kitz J, Sitte M, Beißbarth T, Hinterthaner M, Sebastian M, Lotz J, Schildhaus HU, Wolff H, Danner BC, Brandts C, Büttner R, Canis M, Stegmaier K, Serve H, Urlaub H, Oellerich T.

EMBO Mol Med. 2018 Sep;10(9). pii: e8428. doi: 10.15252/emmm.201708428.

6.

MicroRNA-101 expression is associated with JAK2V617F activity and regulates JAK2/STAT5 signaling.

Pagano F, Comoglio F, Grinfeld J, Li J, Godfrey A, Baxter J, Silber Y, Green AR.

Leukemia. 2018 Aug;32(8):1826-1830. doi: 10.1038/s41375-018-0053-9. Epub 2018 Feb 27. No abstract available.

7.

Thrombopoietin signaling to chromatin elicits rapid and pervasive epigenome remodeling within poised chromatin architectures.

Comoglio F, Park HJ, Schoenfelder S, Barozzi I, Bode D, Fraser P, Green AR.

Genome Res. 2018 Feb 2. pii: gr.227272.117. doi: 10.1101/gr.227272.117. [Epub ahead of print]

8.

Mbd3/NuRD controls lymphoid cell fate and inhibits tumorigenesis by repressing a B cell transcriptional program.

Loughran SJ, Comoglio F, Hamey FK, Giustacchini A, Errami Y, Earp E, Göttgens B, Jacobsen SEW, Mead AJ, Hendrich B, Green AR.

J Exp Med. 2017 Oct 2;214(10):3085-3104. doi: 10.1084/jem.20161827. Epub 2017 Sep 12.

9.

Consensus Document of the Italian Association of Hospital Cardiologists (ANMCO), Italian Society of Pediatric Cardiology (SICP), and Italian Society of Gynaecologists and Obstetrics (SIGO): pregnancy and congenital heart diseases.

Bianca I, Geraci G, Gulizia MM, Egidy Assenza G, Barone C, Campisi M, Alaimo A, Adorisio R, Comoglio F, Favilli S, Agnoletti G, Carmina MG, Chessa M, Sarubbi B, Mongiovì M, Russo MG, Bianca S, Canzone G, Bonvicini M, Viora E, Poli M.

Eur Heart J Suppl. 2017 May;19(Suppl D):D256-D292. doi: 10.1093/eurheartj/sux032. Epub 2017 May 2.

10.

Corrigendum: SAMHD1 is a biomarker for cytarabine response and a therapeutic target in acute myeloid leukemia.

Schneider C, Oellerich T, Baldauf HM, Schwarz SM, Thomas D, Flick R, Bohnenberger H, Kaderali L, Stegmann L, Cremer A, Martin M, Lohmeyer J, Michaelis M, Hornung V, Schliemann C, Berdel WE, Hartmann W, Wardelmann E, Comoglio F, Hansmann ML, Yakunin AF, Geisslinger G, Ströbel P, Ferreirós N, Serve H, Keppler OT, Cinatl J Jr.

Nat Med. 2017 Jun 6;23(6):788. doi: 10.1038/nm0617-788a. No abstract available.

PMID:
28586337
11.

Stable Polycomb-dependent transgenerational inheritance of chromatin states in Drosophila.

Ciabrelli F, Comoglio F, Fellous S, Bonev B, Ninova M, Szabo Q, Xuéreb A, Klopp C, Aravin A, Paro R, Bantignies F, Cavalli G.

Nat Genet. 2017 Jun;49(6):876-886. doi: 10.1038/ng.3848. Epub 2017 Apr 24.

12.

Hoxa9 and Meis1 Cooperatively Induce Addiction to Syk Signaling by Suppressing miR-146a in Acute Myeloid Leukemia.

Mohr S, Doebele C, Comoglio F, Berg T, Beck J, Bohnenberger H, Alexe G, Corso J, Ströbel P, Wachter A, Beissbarth T, Schnütgen F, Cremer A, Haetscher N, Göllner S, Rouhi A, Palmqvist L, Rieger MA, Schroeder T, Bönig H, Müller-Tidow C, Kuchenbauer F, Schütz E, Green AR, Urlaub H, Stegmaier K, Humphries RK, Serve H, Oellerich T.

Cancer Cell. 2017 Apr 10;31(4):549-562.e11. doi: 10.1016/j.ccell.2017.03.001.

13.

HSP90 promotes Burkitt lymphoma cell survival by maintaining tonic B-cell receptor signaling.

Walter R, Pan KT, Doebele C, Comoglio F, Tomska K, Bohnenberger H, Young RM, Jacobs L, Keller U, Bönig H, Engelke M, Rosenwald A, Urlaub H, Staudt LM, Serve H, Zenz T, Oellerich T.

Blood. 2017 Feb 2;129(5):598-608. doi: 10.1182/blood-2016-06-721423. Epub 2016 Nov 15.

14.

SAMHD1 is a biomarker for cytarabine response and a therapeutic target in acute myeloid leukemia.

Schneider C, Oellerich T, Baldauf HM, Schwarz SM, Thomas D, Flick R, Bohnenberger H, Kaderali L, Stegmann L, Cremer A, Martin M, Lohmeyer J, Michaelis M, Hornung V, Schliemann C, Berdel WE, Hartmann W, Wardelmann E, Comoglio F, Hansmann ML, Yakunin AF, Geisslinger G, Ströbel P, Ferreirós N, Serve H, Keppler OT, Cinatl J Jr.

Nat Med. 2017 Feb;23(2):250-255. doi: 10.1038/nm.4255. Epub 2016 Dec 19. Erratum in: Nat Med. 2017 Jun 6;23 (6):788.

PMID:
27991919
15.

[ANMCO/SICP/SIGO Consensus document: Pregnancy and congenital heart disease].

Bianca I, Geraci G, Gulizia MM, Egidy-Assenza G, Barone C, Campisi M, Alaimo A, Adorisio R, Comoglio F, Favilli S, Agnoletti G, Carmina MG, Chessa M, Sarubbi B, Mongiovì M, Russo MG, Bianca S, Canzone G, Bonvicini M, Viora E, Poli M.

G Ital Cardiol (Rome). 2016 Sep;17(9):687-755. doi: 10.1714/2448.25662. Italian.

PMID:
27869889
16.

A High-Density Map for Navigating the Human Polycomb Complexome.

Hauri S, Comoglio F, Seimiya M, Gerstung M, Glatter T, Hansen K, Aebersold R, Paro R, Gstaiger M, Beisel C.

Cell Rep. 2016 Oct 4;17(2):583-595. doi: 10.1016/j.celrep.2016.08.096.

17.

Elucidation of tonic and activated B-cell receptor signaling in Burkitt's lymphoma provides insights into regulation of cell survival.

Corso J, Pan KT, Walter R, Doebele C, Mohr S, Bohnenberger H, Ströbel P, Lenz C, Slabicki M, Hüllein J, Comoglio F, Rieger MA, Zenz T, Wienands J, Engelke M, Serve H, Urlaub H, Oellerich T.

Proc Natl Acad Sci U S A. 2016 May 17;113(20):5688-93. doi: 10.1073/pnas.1601053113. Epub 2016 May 6.

18.

DNAshapeR: an R/Bioconductor package for DNA shape prediction and feature encoding.

Chiu TP, Comoglio F, Zhou T, Yang L, Paro R, Rohs R.

Bioinformatics. 2016 Apr 15;32(8):1211-3. doi: 10.1093/bioinformatics/btv735. Epub 2015 Dec 14.

19.

High-resolution profiling of Drosophila replication start sites reveals a DNA shape and chromatin signature of metazoan origins.

Comoglio F, Schlumpf T, Schmid V, Rohs R, Beisel C, Paro R.

Cell Rep. 2015 May 5;11(5):821-34. doi: 10.1016/j.celrep.2015.03.070. Epub 2015 Apr 23.

20.

During Drosophila disc regeneration, JAK/STAT coordinates cell proliferation with Dilp8-mediated developmental delay.

Katsuyama T, Comoglio F, Seimiya M, Cabuy E, Paro R.

Proc Natl Acad Sci U S A. 2015 May 5;112(18):E2327-36. doi: 10.1073/pnas.1423074112. Epub 2015 Apr 20.

21.

Sensitive and highly resolved identification of RNA-protein interaction sites in PAR-CLIP data.

Comoglio F, Sievers C, Paro R.

BMC Bioinformatics. 2015 Feb 1;16:32. doi: 10.1186/s12859-015-0470-y.

22.

A deterministic analysis of genome integrity during neoplastic growth in Drosophila.

Sievers C, Comoglio F, Seimiya M, Merdes G, Paro R.

PLoS One. 2014 Feb 6;9(2):e87090. doi: 10.1371/journal.pone.0087090. eCollection 2014.

23.

Combinatorial modeling of chromatin features quantitatively predicts DNA replication timing in Drosophila.

Comoglio F, Paro R.

PLoS Comput Biol. 2014 Jan;10(1):e1003419. doi: 10.1371/journal.pcbi.1003419. Epub 2014 Jan 23.

24.

Bayesian inference from count data using discrete uniform priors.

Comoglio F, Fracchia L, Rinaldi M.

PLoS One. 2013 Oct 7;8(10):e74388. doi: 10.1371/journal.pone.0074388. eCollection 2013.

25.

PcG-mediated higher-order chromatin structures modulate replication programs at the Drosophila BX-C.

Lo Sardo F, Lanzuolo C, Comoglio F, De Bardi M, Paro R, Orlando V.

PLoS Genet. 2013;9(2):e1003283. doi: 10.1371/journal.pgen.1003283. Epub 2013 Feb 21.

26.

Network-of-queues approach to B-cell-receptor affinity discrimination.

Felizzi F, Comoglio F.

Phys Rev E Stat Nonlin Soft Matter Phys. 2012 Jun;85(6 Pt 1):061926. Epub 2012 Jun 28.

PMID:
23005146
27.

Mixture models and wavelet transforms reveal high confidence RNA-protein interaction sites in MOV10 PAR-CLIP data.

Sievers C, Schlumpf T, Sawarkar R, Comoglio F, Paro R.

Nucleic Acids Res. 2012 Nov 1;40(20):e160. doi: 10.1093/nar/gks697. Epub 2012 Jul 28.

28.

Rknots: topological analysis of knotted biopolymers with R.

Comoglio F, Rinaldi M.

Bioinformatics. 2012 May 15;28(10):1400-1. doi: 10.1093/bioinformatics/bts160. Epub 2012 Apr 5.

PMID:
22492311
29.

A topological framework for the computation of the HOMFLY polynomial and its application to proteins.

Comoglio F, Rinaldi M.

PLoS One. 2011 Apr 13;6(4):e18693. doi: 10.1371/journal.pone.0018693.

30.

MicroRNA signature of malignant mesothelioma with potential diagnostic and prognostic implications.

Busacca S, Germano S, De Cecco L, Rinaldi M, Comoglio F, Favero F, Murer B, Mutti L, Pierotti M, Gaudino G.

Am J Respir Cell Mol Biol. 2010 Mar;42(3):312-9. doi: 10.1165/rcmb.2009-0060OC. Epub 2009 Jun 5.

PMID:
19502386
31.

Germinal vesicle transfer between fresh and cryopreserved immature mouse oocytes.

Moffa F, Comoglio F, Krey LC, Grifo JA, Revelli A, Massobrio M, Zhang J.

Hum Reprod. 2002 Jan;17(1):178-83.

PMID:
11756384
32.

Ultrasonographic detection of fetal cranio-facial hemangioma: case report and review of the literature.

Viora E, Grassi Pirrone P, Comoglio F, Bastonero S, Campogrande M.

Ultrasound Obstet Gynecol. 2000 May;15(5):431-4. Review.

33.

High-efficiency expression/cloning of epidermal growth factor-receptor-binding proteins with Src homology 2 domains.

Margolis B, Silvennoinen O, Comoglio F, Roonprapunt C, Skolnik E, Ullrich A, Schlessinger J.

Proc Natl Acad Sci U S A. 1992 Oct 1;89(19):8894-8.

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