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Items: 36

1.

White matter abnormalities in depression: A categorical and phenotypic diffusion MRI study.

Coloigner J, Batail JM, Commowick O, Corouge I, Robert G, Barillot C, Drapier D.

Neuroimage Clin. 2019;22:101710. doi: 10.1016/j.nicl.2019.101710. Epub 2019 Feb 4.

2.

Objective Evaluation of Multiple Sclerosis Lesion Segmentation using a Data Management and Processing Infrastructure.

Commowick O, Istace A, Kain M, Laurent B, Leray F, Simon M, Pop SC, Girard P, Améli R, Ferré JC, Kerbrat A, Tourdias T, Cervenansky F, Glatard T, Beaumont J, Doyle S, Forbes F, Knight J, Khademi A, Mahbod A, Wang C, McKinley R, Wagner F, Muschelli J, Sweeney E, Roura E, Lladó X, Santos MM, Santos WP, Silva-Filho AG, Tomas-Fernandez X, Urien H, Bloch I, Valverde S, Cabezas M, Vera-Olmos FJ, Malpica N, Guttmann C, Vukusic S, Edan G, Dojat M, Styner M, Warfield SK, Cotton F, Barillot C.

Sci Rep. 2018 Sep 12;8(1):13650. doi: 10.1038/s41598-018-31911-7.

3.

Measurement of pediatric regional cerebral blood flow from 6 months to 15 years of age in a clinical population.

Carsin-Vu A, Corouge I, Commowick O, Bouzillé G, Barillot C, Ferré JC, Proisy M.

Eur J Radiol. 2018 Apr;101:38-44. doi: 10.1016/j.ejrad.2018.02.003. Epub 2018 Feb 6.

4.

USPIO-positive MS lesions are associated with greater tissue damage than gadolinium-positive-only lesions during 3-year follow-up.

Kerbrat A, Combès B, Commowick O, Maarouf A, Bannier E, Ferré JC, Tourbah A, Ranjeva JP, Barillot C, Edan G.

Mult Scler. 2017 Oct 1:1352458517736148. doi: 10.1177/1352458517736148. [Epub ahead of print]

PMID:
29064775
5.

Block-Matching Distortion Correction of Echo-Planar Images With Opposite Phase Encoding Directions.

Hedouin R, Commowick O, Bannier E, Scherrer B, Taquet M, Warfield SK, Barillot C.

IEEE Trans Med Imaging. 2017 May;36(5):1106-1115. doi: 10.1109/TMI.2016.2646920. Epub 2017 Jan 9.

PMID:
28092527
6.

Longitudinal multiple sclerosis lesion segmentation: Resource and challenge.

Carass A, Roy S, Jog A, Cuzzocreo JL, Magrath E, Gherman A, Button J, Nguyen J, Prados F, Sudre CH, Jorge Cardoso M, Cawley N, Ciccarelli O, Wheeler-Kingshott CAM, Ourselin S, Catanese L, Deshpande H, Maurel P, Commowick O, Barillot C, Tomas-Fernandez X, Warfield SK, Vaidya S, Chunduru A, Muthuganapathy R, Krishnamurthi G, Jesson A, Arbel T, Maier O, Handels H, Iheme LO, Unay D, Jain S, Sima DM, Smeets D, Ghafoorian M, Platel B, Birenbaum A, Greenspan H, Bazin PL, Calabresi PA, Crainiceanu CM, Ellingsen LM, Reich DS, Prince JL, Pham DL.

Neuroimage. 2017 Mar 1;148:77-102. doi: 10.1016/j.neuroimage.2016.12.064. Epub 2017 Jan 11.

7.

Imaging biomarkers in multiple Sclerosis: From image analysis to population imaging.

Barillot C, Edan G, Commowick O.

Med Image Anal. 2016 Oct;33:134-139. doi: 10.1016/j.media.2016.06.017. Epub 2016 Jun 15.

PMID:
27374128
8.

The DTI Challenge: Toward Standardized Evaluation of Diffusion Tensor Imaging Tractography for Neurosurgery.

Pujol S, Wells W, Pierpaoli C, Brun C, Gee J, Cheng G, Vemuri B, Commowick O, Prima S, Stamm A, Goubran M, Khan A, Peters T, Neher P, Maier-Hein KH, Shi Y, Tristan-Vega A, Veni G, Whitaker R, Styner M, Westin CF, Gouttard S, Norton I, Chauvin L, Mamata H, Gerig G, Nabavi A, Golby A, Kikinis R.

J Neuroimaging. 2015 Nov-Dec;25(6):875-82. doi: 10.1111/jon.12283. Epub 2015 Aug 11.

9.

Diffusion MRI abnormalities detection with orientation distribution functions: a multiple sclerosis longitudinal study.

Commowick O, Maarouf A, Ferré JC, Ranjeva JP, Edan G, Barillot C.

Med Image Anal. 2015 May;22(1):114-23. doi: 10.1016/j.media.2015.02.005. Epub 2015 Mar 20.

10.

Predictive value of imaging markers at multiple sclerosis disease onset based on gadolinium- and USPIO-enhanced MRI and machine learning.

Crimi A, Commowick O, Maarouf A, Ferré JC, Bannier E, Tourbah A, Berry I, Ranjeva JP, Edan G, Barillot C.

PLoS One. 2014 Apr 1;9(4):e93024. doi: 10.1371/journal.pone.0093024. eCollection 2014.

11.

A mathematical framework for the registration and analysis of multi-fascicle models for population studies of the brain microstructure.

Taquet M, Scherrer B, Commowick O, Peters JM, Sahin M, Macq B, Warfield SK.

IEEE Trans Med Imaging. 2014 Feb;33(2):504-17. doi: 10.1109/TMI.2013.2289381. Epub 2013 Nov 6.

12.

Non-local robust detection of DTI white matter differences with small databases.

Commowick O, Stamm A.

Med Image Comput Comput Assist Interv. 2012;15(Pt 3):476-84.

13.

Registration and analysis of white matter group differences with a multi-fiber model.

Taquet M, Scherrer B, Commowick O, Peters J, Sahin M, Macq B, Warfield SK.

Med Image Comput Comput Assist Interv. 2012;15(Pt 3):313-20.

14.

Automated diffeomorphic registration of anatomical structures with rigid parts: application to dynamic cervical MRI.

Commowick O, Wiest-Daesslé N, Prima S.

Med Image Comput Comput Assist Interv. 2012;15(Pt 2):163-70.

15.

Adaptive multi-modal particle filtering for probabilistic white matter tractography.

Stamm A, Commowick O, Barillot C, Pérez P.

Inf Process Med Imaging. 2013;23:594-606.

PMID:
24684002
16.

Estimating a reference standard segmentation with spatially varying performance parameters: local MAP STAPLE.

Commowick O, Akhondi-Asl A, Warfield SK.

IEEE Trans Med Imaging. 2012 Aug;31(8):1593-606. doi: 10.1109/TMI.2012.2197406. Epub 2012 May 2.

17.

Voxel-based quantitative analysis of brain images from ¹⁸F-FDG PET with a block-matching algorithm for spatial normalization.

Person C, Louis-Dorr V, Poussier S, Commowick O, Malandain G, Maillard L, Wolf D, Gillet N, Roch V, Karcher G, Marie PY.

Clin Nucl Med. 2012 Mar;37(3):268-73. doi: 10.1097/RLU.0b013e3182443b2d.

PMID:
22310254
18.

Automated delineation of white matter fiber tracts with a multiple region-of-interest approach.

Suarez RO, Commowick O, Prabhu SP, Warfield SK.

Neuroimage. 2012 Feb 15;59(4):3690-700. doi: 10.1016/j.neuroimage.2011.11.043. Epub 2011 Nov 27.

19.

Evaluation of registration methods on thoracic CT: the EMPIRE10 challenge.

Murphy K, van Ginneken B, Reinhardt JM, Kabus S, Ding K, Deng X, Cao K, Du K, Christensen GE, Garcia V, Vercauteren T, Ayache N, Commowick O, Malandain G, Glocker B, Paragios N, Navab N, Gorbunova V, Sporring J, de Bruijne M, Han X, Heinrich MP, Schnabel JA, Jenkinson M, Lorenz C, Modat M, McClelland JR, Ourselin S, Muenzing SE, Viergever MA, De Nigris D, Collins DL, Arbel T, Peroni M, Li R, Sharp GC, Schmidt-Richberg A, Ehrhardt J, Werner R, Smeets D, Loeckx D, Song G, Tustison N, Avants B, Gee JC, Staring M, Klein S, Stoel BC, Urschler M, Werlberger M, Vandemeulebroucke J, Rit S, Sarrut D, Pluim JP.

IEEE Trans Med Imaging. 2011 Nov;30(11):1901-20. doi: 10.1109/TMI.2011.2158349. Epub 2011 May 31.

PMID:
21632295
20.

Construction of patient specific atlases from locally most similar anatomical pieces.

Ramus L, Commowick O, Malandain G.

Med Image Comput Comput Assist Interv. 2010;13(Pt 3):155-62.

21.
22.

[Automatic segmentation using atlases in head and neck cancers: Methodology].

Ramus L, Thariat J, Marcy PY, Pointreau Y, Bera G, Commowick O, Malandain G.

Cancer Radiother. 2010 Jun;14(3):206-12. doi: 10.1016/j.canrad.2010.01.005. Epub 2010 Mar 29. French.

PMID:
20347608
23.

Estimation of inferential uncertainty in assessing expert segmentation performance from STAPLE.

Commowick O, Warfield SK.

IEEE Trans Med Imaging. 2010 Mar;29(3):771-80. doi: 10.1109/TMI.2009.2036011.

24.

Diffusion features of white matter in tuberous sclerosis with tractography.

Krishnan ML, Commowick O, Jeste SS, Weisenfeld N, Hans A, Gregas MC, Sahin M, Warfield SK.

Pediatr Neurol. 2010 Feb;42(2):101-6. doi: 10.1016/j.pediatrneurol.2009.08.001.

25.

A pre-clinical assessment of an atlas-based automatic segmentation tool for the head and neck.

Sims R, Isambert A, Grégoire V, Bidault F, Fresco L, Sage J, Mills J, Bourhis J, Lefkopoulos D, Commowick O, Benkebil M, Malandain G.

Radiother Oncol. 2009 Dec;93(3):474-8. doi: 10.1016/j.radonc.2009.08.013. Epub 2009 Sep 14.

PMID:
19758720
26.
27.

A continuous STAPLE for scalar, vector, and tensor images: an application to DTI analysis.

Commowick O, Warfield SK.

IEEE Trans Med Imaging. 2009 Jun;28(6):838-46. doi: 10.1109/TMI.2008.2010438. Epub 2008 Dec 9.

28.

Using Frankenstein's creature paradigm to build a patient specific atlas.

Commowick O, Warfield SK, Malandain G.

Med Image Comput Comput Assist Interv. 2009;12(Pt 2):993-1000.

29.

Detection of DTI white matter abnormalities in multiple sclerosis patients.

Commowick O, Fillard P, Clatz O, Warfield SK.

Med Image Comput Comput Assist Interv. 2008;11(Pt 1):975-82.

30.

An efficient locally affine framework for the smooth registration of anatomical structures.

Commowick O, Arsigny V, Isambert A, Costa J, Dhermain F, Bidault F, Bondiau PY, Ayache N, Malandain G.

Med Image Anal. 2008 Aug;12(4):427-41. doi: 10.1016/j.media.2008.01.002. Epub 2008 Jan 31.

PMID:
18325825
31.

Atlas-based delineation of lymph node levels in head and neck computed tomography images.

Commowick O, Grégoire V, Malandain G.

Radiother Oncol. 2008 May;87(2):281-9. doi: 10.1016/j.radonc.2008.01.018. Epub 2008 Feb 14.

PMID:
18279984
32.

Evaluation of an atlas-based automatic segmentation software for the delineation of brain organs at risk in a radiation therapy clinical context.

Isambert A, Dhermain F, Bidault F, Commowick O, Bondiau PY, Malandain G, Lefkopoulos D.

Radiother Oncol. 2008 Apr;87(1):93-9. Epub 2007 Dec 26.

PMID:
18155791
33.

Efficient selection of the most similar image in a database for critical structures segmentation.

Commowick O, Malandain G.

Med Image Comput Comput Assist Interv. 2007;10(Pt 2):203-10.

PMID:
18044570
34.

A log-Euclidean framework for statistics on diffeomorphisms.

Arsigny V, Commowick O, Pennec X, Ayache N.

Med Image Comput Comput Assist Interv. 2006;9(Pt 1):924-31.

PMID:
17354979
35.

Incorporating statistical measures of anatomical variability in atlas-to-subject registration for conformal brain radiotherapy.

Commowick O, Stefanescu R, Fillard P, Arsigny V, Ayache N, Pennec X, Malandain G.

Med Image Comput Comput Assist Interv. 2005;8(Pt 2):927-34.

PMID:
16686049
36.

Atlas-based automatic segmentation of MR images: validation study on the brainstem in radiotherapy context.

Bondiau PY, Malandain G, Chanalet S, Marcy PY, Habrand JL, Fauchon F, Paquis P, Courdi A, Commowick O, Rutten I, Ayache N.

Int J Radiat Oncol Biol Phys. 2005 Jan 1;61(1):289-98.

PMID:
15629622

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