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Items: 35

1.

Comparison of core-genome MLST, coreSNP and PFGE methods for Klebsiella pneumoniae cluster analysis.

Gona F, Comandatore F, Battaglia S, Piazza A, Trovato A, Lorenzin G, Cichero P, Biancardi A, Nizzero P, Moro M, Cirillo DM.

Microb Genom. 2020 Mar 9. doi: 10.1099/mgen.0.000347. [Epub ahead of print]

2.

EasyPrimer: user-friendly tool for pan-PCR/HRM primers design. Development of an HRM protocol on wzi gene for fast Klebsiella pneumoniae typing.

Perini M, Piazza A, Panelli S, Di Carlo D, Corbella M, Gona F, Vailati F, Marone P, Cirillo DM, Farina C, Zuccotti G, Comandatore F.

Sci Rep. 2020 Jan 28;10(1):1307. doi: 10.1038/s41598-020-57742-z.

3.

In vivo acquisition and risk of inter-species spread of bla KPC-3-plasmid from Klebsiella pneumoniae to Serratia marcescens in the lower respiratory tract.

Bielli A, Piazza A, Cento V, Comandatore F, Lepera V, Gatti M, Brioschi P, Vismara C, Bandi C, Perno CF.

J Med Microbiol. 2020 Jan;69(1):82-86. doi: 10.1099/jmm.0.001113.

PMID:
31904319
4.

Multiple Klebsiella pneumoniae KPC Clones Contribute to an Extended Hospital Outbreak.

Ferrari C, Corbella M, Gaiarsa S, Comandatore F, Scaltriti E, Bandi C, Cambieri P, Marone P, Sassera D.

Front Microbiol. 2019 Nov 29;10:2767. doi: 10.3389/fmicb.2019.02767. eCollection 2019.

5.

Gene Composition as a Potential Barrier to Large Recombinations in the Bacterial Pathogen Klebsiella pneumoniae.

Comandatore F, Sassera D, Bayliss SC, Scaltriti E, Gaiarsa S, Cao X, Gales AC, Saito R, Pongolini S, Brisse S, Feil EJ, Bandi C.

Genome Biol Evol. 2019 Nov 1;11(11):3240-3251. doi: 10.1093/gbe/evz236.

6.

SeqDeχ: A Sequence Deconvolution Tool for Genome Separation of Endosymbionts From Mixed Sequencing Samples.

Chiodi A, Comandatore F, Sassera D, Petroni G, Bandi C, Brilli M.

Front Genet. 2019 Sep 19;10:853. doi: 10.3389/fgene.2019.00853. eCollection 2019.

7.

Can Insertion Sequences Proliferation Influence Genomic Plasticity? Comparative Analysis of Acinetobacter baumannii Sequence Type 78, a Persistent Clone in Italian Hospitals.

Gaiarsa S, Bitar I, Comandatore F, Corbella M, Piazza A, Scaltriti E, Villa L, Postiglione U, Marone P, Nucleo E, Pongolini S, Migliavacca R, Sassera D.

Front Microbiol. 2019 Sep 12;10:2080. doi: 10.3389/fmicb.2019.02080. eCollection 2019.

8.

Taste perception and oral microbiota are associated with obesity in children and adolescents.

Mameli C, Cattaneo C, Panelli S, Comandatore F, Sangiorgio A, Bedogni G, Bandi C, Zuccotti G, Pagliarini E.

PLoS One. 2019 Sep 11;14(9):e0221656. doi: 10.1371/journal.pone.0221656. eCollection 2019.

9.

A meta-barcoding analysis of soil mycobiota of the upper Andean Colombian agro-environment.

Landinez-Torres A, Panelli S, Picco AM, Comandatore F, Tosi S, Capelli E.

Sci Rep. 2019 Jul 12;9(1):10085. doi: 10.1038/s41598-019-46485-1.

10.

Genomic Characterization of an ST1153 PVL-producing Methicillin Resistant Staphylococcus aureus Clinical Isolate in Italy.

Rimoldi SG, Comandatore F, Longhi E, Romeri F, Piazza A, Pagani C, Tamoni A, Longobardi C, Negri C, Bestetti G, Gervasoni C, Perini M, Antinori S, Bandi C, Gismondo MR.

New Microbiol. 2019 Apr;42(2):129-131. Epub 2019 Apr 29.

11.

Identification of blaVIM-1 Gene in ST307 and ST661 Klebsiella pneumoniae Clones in Italy: Old Acquaintances for New Combinations.

Piazza A, Comandatore F, Romeri F, Brilli M, Dichirico B, Ridolfo A, Antona C, Bandi C, Gismondo MR, Rimoldi SG.

Microb Drug Resist. 2019 Jun;25(5):787-790. doi: 10.1089/mdr.2018.0327. Epub 2018 Dec 27.

PMID:
30589602
12.

Is there life in the meconium? A challenging, burning question.

Panelli S, Schneider L, Comandatore F, Bandi C, Zuccotti GV, D'Auria E.

Pharmacol Res. 2018 Nov;137:148-149. doi: 10.1016/j.phrs.2018.10.005. Epub 2018 Oct 5. No abstract available.

PMID:
30296570
13.

Detection of ST1702 Escherichia coli blaNDM-5 and blaCMY-42 genes positive isolates from a Northern Italian hospital.

Piazza A, Comandatore F, Romeri F, Pagani C, Mattioni Marchetti V, Brilli M, Panelli S, Migliavacca R, Ridolfo A, Olivieri P, Gismondo MR, Bandi C, Rimoldi SG.

New Microbiol. 2018 Jul;41(3):230-231. Epub 2018 Jul 20.

14.

First Report of an ST410 OXA-181 and CTX-M-15 Coproducing Escherichia coli Clone in Italy: A Whole-Genome Sequence Characterization.

Piazza A, Comandatore F, Romeri F, Pagani C, Floriano AM, Ridolfo A, Antona C, Brilli M, Mattioni Marchetti V, Bandi C, Gismondo MR, Rimoldi SG.

Microb Drug Resist. 2018 Oct;24(8):1207-1209. doi: 10.1089/mdr.2017.0366. Epub 2018 Feb 23.

PMID:
29473791
15.

Genomic Characterization Helps Dissecting an Outbreak of Listeriosis in Northern Italy.

Comandatore F, Corbella M, Andreoli G, Scaltriti E, Aguzzi M, Gaiarsa S, Mariani B, Morganti M, Bandi C, Fabbi M, Marone P, Pongolini S, Sassera D.

PLoS Curr. 2017 Jul 6;9. pii: ecurrents.outbreaks.633fd8994e9f06f31b3494567c7e504c. doi: 10.1371/currents.outbreaks.633fd8994e9f06f31b3494567c7e504c.

16.

A survey of the mycobiota associated with larvae of the black soldier fly (Hermetia illucens) reared for feed production.

Varotto Boccazzi I, Ottoboni M, Martin E, Comandatore F, Vallone L, Spranghers T, Eeckhout M, Mereghetti V, Pinotti L, Epis S.

PLoS One. 2017 Aug 3;12(8):e0182533. doi: 10.1371/journal.pone.0182533. eCollection 2017.

17.

Three cases of mcr-1-positive colistin-resistant Escherichia coli bloodstream infections in Italy, August 2016 to January 2017.

Corbella M, Mariani B, Ferrari C, Comandatore F, Scaltriti E, Marone P, Cambieri P.

Euro Surveill. 2017 Apr 20;22(16). pii: 30517. doi: 10.2807/1560-7917.ES.2017.22.16.30517.

18.

The choreography of the chemical defensome response to insecticide stress: insights into the Anopheles stephensi transcriptome using RNA-Seq.

De Marco L, Sassera D, Epis S, Mastrantonio V, Ferrari M, Ricci I, Comandatore F, Bandi C, Porretta D, Urbanelli S.

Sci Rep. 2017 Jan 23;7:41312. doi: 10.1038/srep41312.

19.

Intra-instar larval cannibalism in Anopheles gambiae (s.s.) and Anopheles stephensi (Diptera: Culicidae).

Porretta D, Mastrantonio V, Crasta G, Bellini R, Comandatore F, Rossi P, Favia G, Bandi C, Urbanelli S.

Parasit Vectors. 2016 Nov 2;9(1):566.

20.

Transcriptome of larvae representing the Rhipicephalus sanguineus complex.

De Marco L, Epis S, Comandatore F, Porretta D, Cafarchia C, Mastrantonio V, Dantas-Torres F, Otranto D, Urbanelli S, Bandi C, Sassera D.

Mol Cell Probes. 2017 Feb;31:85-90. doi: 10.1016/j.mcp.2016.02.006. Epub 2016 Feb 24.

PMID:
26921517
21.

Bacterial genomic epidemiology, from local outbreak characterization to species-history reconstruction.

Gaiarsa S, De Marco L, Comandatore F, Marone P, Bandi C, Sassera D.

Pathog Glob Health. 2015;109(7):319-27. doi: 10.1080/20477724.2015.1103503. Review.

22.

Supergroup C Wolbachia, mutualist symbionts of filarial nematodes, have a distinct genome structure.

Comandatore F, Cordaux R, Bandi C, Blaxter M, Darby A, Makepeace BL, Montagna M, Sassera D.

Open Biol. 2015 Dec;5(12):150099. doi: 10.1098/rsob.150099.

23.

Tracking Nosocomial Klebsiella pneumoniae Infections and Outbreaks by Whole-Genome Analysis: Small-Scale Italian Scenario within a Single Hospital.

Onori R, Gaiarsa S, Comandatore F, Pongolini S, Brisse S, Colombo A, Cassani G, Marone P, Grossi P, Minoja G, Bandi C, Sassera D, Toniolo A.

J Clin Microbiol. 2015 Sep;53(9):2861-8. doi: 10.1128/JCM.00545-15. Epub 2015 Jul 1.

24.

Matrix-assisted laser desorption ionization-time of flight and comparative genomic analysis of M-18 group a Streptococcus strains associated with an acute rheumatic fever outbreak in northeast Italy in 2012 and 2013.

Gaibani P, Scaltriti E, Foschi C, Baggio E, Tamburini MV, Creti R, Pascucci MG, Fagioni M, Ambretti S, Comandatore F, Pongolini S, Landini MP.

J Clin Microbiol. 2015 May;53(5):1562-72. doi: 10.1128/JCM.03465-14. Epub 2015 Mar 4.

25.

Differential single nucleotide polymorphism-based analysis of an outbreak caused by Salmonella enterica serovar Manhattan reveals epidemiological details missed by standard pulsed-field gel electrophoresis.

Scaltriti E, Sassera D, Comandatore F, Morganti M, Mandalari C, Gaiarsa S, Bandi C, Zehender G, Bolzoni L, Casadei G, Pongolini S.

J Clin Microbiol. 2015 Apr;53(4):1227-38. doi: 10.1128/JCM.02930-14. Epub 2015 Feb 4.

26.

Genomic epidemiology of Klebsiella pneumoniae in Italy and novel insights into the origin and global evolution of its resistance to carbapenem antibiotics.

Gaiarsa S, Comandatore F, Gaibani P, Corbella M, Dalla Valle C, Epis S, Scaltriti E, Carretto E, Farina C, Labonia M, Landini MP, Pongolini S, Sambri V, Bandi C, Marone P, Sassera D.

Antimicrob Agents Chemother. 2015 Jan;59(1):389-96. doi: 10.1128/AAC.04224-14. Epub 2014 Nov 3.

27.

ABC transporters are involved in defense against permethrin insecticide in the malaria vector Anopheles stephensi.

Epis S, Porretta D, Mastrantonio V, Comandatore F, Sassera D, Rossi P, Cafarchia C, Otranto D, Favia G, Genchi C, Bandi C, Urbanelli S.

Parasit Vectors. 2014 Jul 29;7:349. doi: 10.1186/1756-3305-7-349.

28.

Evolution of mitochondria reconstructed from the energy metabolism of living bacteria.

Degli Esposti M, Chouaia B, Comandatore F, Crotti E, Sassera D, Lievens PM, Daffonchio D, Bandi C.

PLoS One. 2014 May 7;9(5):e96566. doi: 10.1371/journal.pone.0096566. eCollection 2014.

29.

Acetic acid bacteria genomes reveal functional traits for adaptation to life in insect guts.

Chouaia B, Gaiarsa S, Crotti E, Comandatore F, Degli Esposti M, Ricci I, Alma A, Favia G, Bandi C, Daffonchio D.

Genome Biol Evol. 2014 Apr;6(4):912-20. doi: 10.1093/gbe/evu062.

30.

Phylogenomics and analysis of shared genes suggest a single transition to mutualism in Wolbachia of nematodes.

Comandatore F, Sassera D, Montagna M, Kumar S, Koutsovoulos G, Thomas G, Repton C, Babayan SA, Gray N, Cordaux R, Darby A, Makepeace B, Blaxter M.

Genome Biol Evol. 2013;5(9):1668-74. doi: 10.1093/gbe/evt125.

31.

Draft Genome Sequence of Stenotrophomonas maltophilia Strain EPM1, Found in Association with a Culture of the Human Parasite Giardia duodenalis.

Sassera D, Leardini I, Villa L, Comandatore F, Carta C, Almeida A, do Céu Sousa M, Gaiarsa S, Marone P, Pozio E, Cacciò SM.

Genome Announc. 2013 Apr 18;1(2):e0018213. doi: 10.1128/genomeA.00182-13.

32.

Draft Genome Sequences of Two Multidrug Resistant Klebsiella pneumoniae ST258 Isolates Resistant to Colistin.

Comandatore F, Sassera D, Ambretti S, Landini MP, Daffonchio D, Marone P, Sambri V, Bandi C, Gaibani P.

Genome Announc. 2013 Jan;1(1). pii: e00113-12. doi: 10.1128/genomeA.00113-12. Epub 2013 Jan 24.

33.

Draft Genome of Klebsiella pneumoniae Sequence Type 512, a Multidrug-Resistant Strain Isolated during a Recent KPC Outbreak in Italy.

Comandatore F, Gaibani P, Ambretti S, Landini MP, Daffonchio D, Marone P, Sambri V, Bandi C, Sassera D.

Genome Announc. 2013 Jan;1(1). pii: e00035-12. doi: 10.1128/genomeA.00035-12. Epub 2013 Jan 15.

34.

The genome of the heartworm, Dirofilaria immitis, reveals drug and vaccine targets.

Godel C, Kumar S, Koutsovoulos G, Ludin P, Nilsson D, Comandatore F, Wrobel N, Thompson M, Schmid CD, Goto S, Bringaud F, Wolstenholme A, Bandi C, Epe C, Kaminsky R, Blaxter M, Mäser P.

FASEB J. 2012 Nov;26(11):4650-61. doi: 10.1096/fj.12-205096. Epub 2012 Aug 13.

35.

Phylogenomic evidence for the presence of a flagellum and cbb(3) oxidase in the free-living mitochondrial ancestor.

Sassera D, Lo N, Epis S, D'Auria G, Montagna M, Comandatore F, Horner D, Peretó J, Luciano AM, Franciosi F, Ferri E, Crotti E, Bazzocchi C, Daffonchio D, Sacchi L, Moya A, Latorre A, Bandi C.

Mol Biol Evol. 2011 Dec;28(12):3285-96. doi: 10.1093/molbev/msr159. Epub 2011 Jun 20.

PMID:
21690562

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