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The persimmon genome reveals clues to the evolution of a lineage-specific sex determination system in plants.

Akagi T, Shirasawa K, Nagasaki H, Hirakawa H, Tao R, Comai L, Henry IM.

PLoS Genet. 2020 Feb 18;16(2):e1008566. doi: 10.1371/journal.pgen.1008566. [Epub ahead of print]


Genomic Outcomes of Haploid Induction Crosses in Potato (Solanum tuberosum L.).

Amundson KR, Ordoñez B, Santayana M, Tan EH, Henry IM, Mihovilovich E, Bonierbale M, Comai L.

Genetics. 2020 Feb;214(2):369-380. doi: 10.1534/genetics.119.302843. Epub 2019 Dec 23.


Comparison between the Transcriptomes of 'KDML105' Rice and a Salt-Tolerant Chromosome Segment Substitution Line.

Khrueasan N, Chutimanukul P, Plaimas K, Buaboocha T, Siangliw M, Toojinda T, Comai L, Chadchawan S.

Genes (Basel). 2019 Sep 24;10(10). pii: E742. doi: 10.3390/genes10100742.


Genetic variation and temperature affects hybrid barriers during interspecific hybridization.

Bjerkan KN, Hornslien KS, Johannessen IM, Krabberød AK, van Ekelenburg YS, Kalantarian M, Shirzadi R, Comai L, Brysting AK, Bramsiepe J, Grini PE.

Plant J. 2020 Jan;101(1):122-140. doi: 10.1111/tpj.14523. Epub 2019 Oct 12.


Haploid Induction and Genome Instability.

Comai L, Tan EH.

Trends Genet. 2019 Nov;35(11):791-803. doi: 10.1016/j.tig.2019.07.005. Epub 2019 Aug 14. Review.


Comparative Genomic Analysis of Rice with Contrasting Photosynthesis and Grain Production under Salt Stress.

Lekklar C, Suriya-Arunroj D, Pongpanich M, Comai L, Kositsup B, Chadchawan S, Buaboocha T.

Genes (Basel). 2019 Jul 25;10(8). pii: E562. doi: 10.3390/genes10080562.


A comprehensive genomic scan reveals gene dosage balance impacts on quantitative traits in Populus trees.

Bastiaanse H, Zinkgraf M, Canning C, Tsai H, Lieberman M, Comai L, Henry I, Groover A.

Proc Natl Acad Sci U S A. 2019 Jul 2;116(27):13690-13699. doi: 10.1073/pnas.1903229116. Epub 2019 Jun 18.


Regeneration of Solanum tuberosum Plants from Protoplasts Induces Widespread Genome Instability.

Fossi M, Amundson K, Kuppu S, Britt A, Comai L.

Plant Physiol. 2019 May;180(1):78-86. doi: 10.1104/pp.18.00906. Epub 2019 Feb 21.


Genome-wide association study for salinity tolerance at the flowering stage in a panel of rice accessions from Thailand.

Lekklar C, Pongpanich M, Suriya-Arunroj D, Chinpongpanich A, Tsai H, Comai L, Chadchawan S, Buaboocha T.

BMC Genomics. 2019 Jan 22;20(1):76. doi: 10.1186/s12864-018-5317-2.


Rice Overexpressing OsNUC1-S Reveals Differential Gene Expression Leading to Yield Loss Reduction after Salt Stress at the Booting Stage.

Boonchai C, Udomchalothorn T, Sripinyowanich S, Comai L, Buaboocha T, Chadchawan S.

Int J Mol Sci. 2018 Dec 7;19(12). pii: E3936. doi: 10.3390/ijms19123936.


Downstream components of the calmodulin signaling pathway in the rice salt stress response revealed by transcriptome profiling and target identification.

Yuenyong W, Chinpongpanich A, Comai L, Chadchawan S, Buaboocha T.

BMC Plant Biol. 2018 Dec 5;18(1):335. doi: 10.1186/s12870-018-1538-4.


Data in support of photosynthetic responses in a chromosome segment substitution line of 'Khao Dawk Mali 105' rice at seedling stage.

Chutimanukul P, Kositsup B, Plaimas K, Buaboocha T, Siangliw M, Toojinda T, Comai L, Chadchawan S.

Data Brief. 2018 Oct 3;21:307-312. doi: 10.1016/j.dib.2018.09.128. eCollection 2018 Dec.


The taming of the shrub.

Comai L.

Nat Plants. 2018 Oct;4(10):742-743. doi: 10.1038/s41477-018-0275-x. No abstract available.


One Hundred Ways to Invent the Sexes: Theoretical and Observed Paths to Dioecy in Plants.

Henry IM, Akagi T, Tao R, Comai L.

Annu Rev Plant Biol. 2018 Apr 29;69:553-575. doi: 10.1146/annurev-arplant-042817-040615. Review.


Detection of Chromothripsis in Plants.

Henry IM, Comai L, Tan EH.

Methods Mol Biol. 2018;1769:119-132. doi: 10.1007/978-1-4939-7780-2_8.


​Plant centromeres​.

Comai L, Maheshwari S, Marimuthu MPA.

Curr Opin Plant Biol. 2017 Apr;36:158-167. doi: 10.1016/j.pbi.2017.03.003. Epub 2017 Apr 13. Review.


Centromere location in Arabidopsis is unaltered by extreme divergence in CENH3 protein sequence.

Maheshwari S, Ishii T, Brown CT, Houben A, Comai L.

Genome Res. 2017 Mar;27(3):471-478. doi: 10.1101/gr.214619.116. Epub 2017 Feb 21.


OsNucleolin1-L Expression in Arabidopsis Enhances Photosynthesis via Transcriptome Modification under Salt Stress Conditions.

Udomchalothorn T, Plaimas K, Sripinyowanich S, Boonchai C, Kojonna T, Chutimanukul P, Comai L, Buaboocha T, Chadchawan S.

Plant Cell Physiol. 2017 Apr 1;58(4):717-734. doi: 10.1093/pcp/pcx024.


Epigenetic Regulation of the Sex Determination Gene MeGI in Polyploid Persimmon.

Akagi T, Henry IM, Kawai T, Comai L, Tao R.

Plant Cell. 2016 Dec;28(12):2905-2915. doi: 10.1105/tpc.16.00532. Epub 2016 Dec 12.


Significant enhancement of fatty acid composition in seeds of the allohexaploid, Camelina sativa, using CRISPR/Cas9 gene editing.

Jiang WZ, Henry IM, Lynagh PG, Comai L, Cahoon EB, Weeks DP.

Plant Biotechnol J. 2017 May;15(5):648-657. doi: 10.1111/pbi.12663. Epub 2017 Jan 12.


The Werner Syndrome Helicase Coordinates Sequential Strand Displacement and FEN1-Mediated Flap Cleavage during Polymerase δ Elongation.

Li B, Reddy S, Comai L.

Mol Cell Biol. 2017 Jan 19;37(3). pii: e00560-16. doi: 10.1128/MCB.00560-16. Print 2017 Feb 1.


Recent advances in understanding the role of lamins in health and disease.

Reddy S, Comai L.

F1000Res. 2016 Oct 19;5:2536. eCollection 2016. Review.


Muscleblind-like 3 deficit results in a spectrum of age-associated pathologies observed in myotonic dystrophy.

Choi J, Dixon DM, Dansithong W, Abdallah WF, Roos KP, Jordan MC, Trac B, Lee HS, Comai L, Reddy S.

Sci Rep. 2016 Aug 3;6:30999. doi: 10.1038/srep30999.


Rapid identification of lettuce seed germination mutants by bulked segregant analysis and whole genome sequencing.

Huo H, Henry IM, Coppoolse ER, Verhoef-Post M, Schut JW, de Rooij H, Vogelaar A, Joosen RV, Woudenberg L, Comai L, Bradford KJ.

Plant J. 2016 Nov;88(3):345-360. doi: 10.1111/tpj.13267. Epub 2016 Sep 15.


Creation and Genomic Analysis of Irradiation Hybrids in Populus.

Zinkgraf M, Haiby K, Lieberman MC, Comai L, Henry IM, Groover A.

Curr Protoc Plant Biol. 2016 Mar;1(2):431-450. doi: 10.1002/cppb.20025.


De novo transcriptome sequencing in Bixa orellana to identify genes involved in methylerythritol phosphate, carotenoid and bixin biosynthesis.

Cárdenas-Conejo Y, Carballo-Uicab V, Lieberman M, Aguilar-Espinosa M, Comai L, Rivera-Madrid R.

BMC Genomics. 2015 Oct 28;16:877. doi: 10.1186/s12864-015-2065-4.


Muscleblind-Like 1 and Muscleblind-Like 3 Depletion Synergistically Enhances Myotonia by Altering Clc-1 RNA Translation.

Choi J, Personius KE, DiFranco M, Dansithong W, Yu C, Srivastava S, Dixon DM, Bhatt DB, Comai L, Vergara JL, Reddy S.

EBioMedicine. 2015 Jul 31;2(9):1034-47. doi: 10.1016/j.ebiom.2015.07.028. eCollection 2015 Sep.


High-Throughput Analysis of T-DNA Location and Structure Using Sequence Capture.

Inagaki S, Henry IM, Lieberman MC, Comai L.

PLoS One. 2015 Oct 7;10(10):e0139672. doi: 10.1371/journal.pone.0139672. eCollection 2015.


Point Mutations in Centromeric Histone Induce Post-zygotic Incompatibility and Uniparental Inheritance.

Kuppu S, Tan EH, Nguyen H, Rodgers A, Comai L, Chan SW, Britt AB.

PLoS Genet. 2015 Sep 9;11(9):e1005494. doi: 10.1371/journal.pgen.1005494. eCollection 2015 Sep.


A System for Dosage-Based Functional Genomics in Poplar.

Henry IM, Zinkgraf MS, Groover AT, Comai L.

Plant Cell. 2015 Sep;27(9):2370-83. doi: 10.1105/tpc.15.00349. Epub 2015 Aug 28.


Catastrophic chromosomal restructuring during genome elimination in plants.

Tan EH, Henry IM, Ravi M, Bradnam KR, Mandakova T, Marimuthu MP, Korf I, Lysak MA, Comai L, Chan SW.

Elife. 2015 May 15;4. pii: e06516. doi: 10.7554/eLife.06516.


Loss of muscleblind-like 1 results in cardiac pathology and persistence of embryonic splice isoforms.

Dixon DM, Choi J, El-Ghazali A, Park SY, Roos KP, Jordan MC, Fishbein MC, Comai L, Reddy S.

Sci Rep. 2015 Mar 12;5:9042. doi: 10.1038/srep09042.


Tilling by sequencing.

Tsai H, Ngo K, Lieberman M, Missirian V, Comai L.

Methods Mol Biol. 2015;1284:359-80. doi: 10.1007/978-1-4939-2444-8_18.


Perturbation of parentally biased gene expression during interspecific hybridization.

Burkart-Waco D, Ngo K, Lieberman M, Comai L.

PLoS One. 2015 Feb 26;10(2):e0117293. doi: 10.1371/journal.pone.0117293. eCollection 2015.


Naturally occurring differences in CENH3 affect chromosome segregation in zygotic mitosis of hybrids.

Maheshwari S, Tan EH, West A, Franklin FC, Comai L, Chan SW.

PLoS Genet. 2015 Jan 26;11(1):e1004970. doi: 10.1371/journal.pgen.1004970. eCollection 2015 Jan.


Plant genetics. A Y-chromosome-encoded small RNA acts as a sex determinant in persimmons.

Akagi T, Henry IM, Tao R, Comai L.

Science. 2014 Oct 31;346(6209):646-50. doi: 10.1126/science.1257225. Epub 2014 Oct 30.


A haploid genetics toolbox for Arabidopsis thaliana.

Ravi M, Marimuthu MP, Tan EH, Maheshwari S, Henry IM, Marin-Rodriguez B, Urtecho G, Tan J, Thornhill K, Zhu F, Panoli A, Sundaresan V, Britt AB, Comai L, Chan SW.

Nat Commun. 2014 Oct 31;5:5334. doi: 10.1038/ncomms6334.


Distinct roles for mitogen-activated protein kinase signaling and CALMODULIN-BINDING TRANSCRIPTIONAL ACTIVATOR3 in regulating the peak time and amplitude of the plant general stress response.

Bjornson M, Benn G, Song X, Comai L, Franz AK, Dandekar AM, Drakakaki G, Dehesh K.

Plant Physiol. 2014 Oct;166(2):988-96. doi: 10.1104/pp.114.245944. Epub 2014 Aug 25.


Genome elimination: translating basic research into a future tool for plant breeding.

Comai L.

PLoS Biol. 2014 Jun 10;12(6):e1001876. doi: 10.1371/journal.pbio.1001876. eCollection 2014 Jun.


Downregulation of the Werner syndrome protein induces a metabolic shift that compromises redox homeostasis and limits proliferation of cancer cells.

Li B, Iglesias-Pedraz JM, Chen LY, Yin F, Cadenas E, Reddy S, Comai L.

Aging Cell. 2014 Apr;13(2):367-78.


Efficient Genome-Wide Detection and Cataloging of EMS-Induced Mutations Using Exome Capture and Next-Generation Sequencing.

Henry IM, Nagalakshmi U, Lieberman MC, Ngo KJ, Krasileva KV, Vasquez-Gross H, Akhunova A, Akhunov E, Dubcovsky J, Tai TH, Comai L.

Plant Cell. 2014 Apr;26(4):1382-1397. Epub 2014 Apr 11.


The BOY NAMED SUE quantitative trait locus confers increased meiotic stability to an adapted natural allopolyploid of Arabidopsis.

Henry IM, Dilkes BP, Tyagi A, Gao J, Christensen B, Comai L.

Plant Cell. 2014 Jan;26(1):181-94. doi: 10.1105/tpc.113.120626. Epub 2014 Jan 24.


Early disruption of maternal-zygotic interaction and activation of defense-like responses in Arabidopsis interspecific crosses.

Burkart-Waco D, Ngo K, Dilkes B, Josefsson C, Comai L.

Plant Cell. 2013 Jun;25(6):2037-55. doi: 10.1105/tpc.112.108258. Epub 2013 Jun 28.


The passionate life of Simon Chan.

Comai L.

Genome Biol. 2013 Jan 30;14(1):103. doi: 10.1186/gb-2013-14-1-103. No abstract available.


Production of a high-efficiency TILLING population through polyploidization.

Tsai H, Missirian V, Ngo KJ, Tran RK, Chan SR, Sundaresan V, Comai L.

Plant Physiol. 2013 Apr;161(4):1604-14. doi: 10.1104/pp.112.213256. Epub 2013 Feb 15.


RNA splicing is responsive to MBNL1 dose.

Jog SP, Paul S, Dansithong W, Tring S, Comai L, Reddy S.

PLoS One. 2012;7(11):e48825. doi: 10.1371/journal.pone.0048825. Epub 2012 Nov 15.


TILLING and ecotilling for rice.

Cooper JL, Henikoff S, Comai L, Till BJ.

Methods Mol Biol. 2013;956:39-56. doi: 10.1007/978-1-62703-194-3_4.


A filtering strategy identifies FOXQ1 as a potential effector of lamin A dysfunction.

Candelario J, Chen LY, Marjoram P, Reddy S, Comai L.

Aging (Albany NY). 2012 Aug;4(8):567-77.


MicroRNAs: key gene regulators with versatile functions.

Comai L, Zhang B.

Plant Mol Biol. 2012 Sep;80(1):1. doi: 10.1007/s11103-012-9947-5. No abstract available.


Global analysis of the small RNA transcriptome in different ploidies and genomic combinations of a vertebrate complex--the Squalius alburnoides.

Inácio A, Pinho J, Pereira PM, Comai L, Coelho MM.

PLoS One. 2012;7(7):e41158. doi: 10.1371/journal.pone.0041158. Epub 2012 Jul 18.

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