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Items: 1 to 50 of 534

1.

Oral Beta-Lactamase Protects the Canine Gut Microbiome from Oral Amoxicillin-Mediated Damage.

Connelly S, Fanelli B, Hasan NA, Colwell RR, Kaleko M.

Microorganisms. 2019 May 27;7(5). pii: E150. doi: 10.3390/microorganisms7050150.

2.

Consent insufficient for data release-Response.

Amann RI, Baichoo S, Blencowe BJ, Bork P, Borodovsky M, Brooksbank C, Chain PSG, Colwell RR, Daffonchio DG, Danchin A, de Lorenzo V, Dorrestein PC, Finn RD, Fraser CM, Gilbert JA, Hallam SJ, Hugenholtz P, Ioannidis JPA, Jansson JK, Kim JF, Klenk HP, Klotz MG, Knight R, Konstantinidis KT, Kyrpides NC, Mason CE, McHardy AC, Meyer F, Ouzounis CA, Patrinos AAN, Podar M, Pollard KS, Ravel J, Muñoz AR, Roberts RJ, Rosselló-Móra R, Sansone SA, Schloss PD, Schriml LM, Setubal JC, Sorek R, Stevens RL, Tiedje JM, Turjanski A, Tyson GW, Ussery DW, Weinstock GM, White O, Whitman WB, Xenarios I.

Science. 2019 May 3;364(6439):446. doi: 10.1126/science.aax7509. No abstract available.

PMID:
31048484
3.

Drinking Water Microbiome Project: Is it Time?

Hull NM, Ling F, Pinto AJ, Albertsen M, Jang HG, Hong PY, Konstantinidis KT, LeChevallier M, Colwell RR, Liu WT.

Trends Microbiol. 2019 Apr 25. pii: S0966-842X(19)30075-7. doi: 10.1016/j.tim.2019.03.011. [Epub ahead of print] Review.

PMID:
31031092
4.

Correction to: Comprehensive benchmarking and ensemble approaches for metagenomic classifiers.

McIntyre ABR, Ounit R, Afshinnekoo E, Prill RJ, Hénaff E, Alexander N, Minot SS, Danko D, Foox J, Ahsanuddin S, Tighe S, Hasan NA, Subramanian P, Moffat K, Levy S, Lonardi S, Greenfield N, Colwell RR, Rosen GL, Mason CE.

Genome Biol. 2019 Apr 5;20(1):72. doi: 10.1186/s13059-019-1687-2.

5.

Science during crisis.

Colwell RR, Machlis GE.

Science. 2019 Apr 5;364(6435):5. doi: 10.1126/science.aax5052. Epub 2019 Apr 4. No abstract available.

PMID:
30948528
6.

Metagenomic Profiling of Microbial Pathogens in the Little Bighorn River, Montana.

Hamner S, Brown BL, Hasan NA, Franklin MJ, Doyle J, Eggers MJ, Colwell RR, Ford TE.

Int J Environ Res Public Health. 2019 Mar 27;16(7). pii: E1097. doi: 10.3390/ijerph16071097.

7.

Oral Metallo-Beta-Lactamase Protects the Gut Microbiome From Carbapenem-Mediated Damage and Reduces Propagation of Antibiotic Resistance in Pigs.

Connelly S, Fanelli B, Hasan NA, Colwell RR, Kaleko M.

Front Microbiol. 2019 Feb 5;10:101. doi: 10.3389/fmicb.2019.00101. eCollection 2019.

8.

Toward unrestricted use of public genomic data.

Amann RI, Baichoo S, Blencowe BJ, Bork P, Borodovsky M, Brooksbank C, Chain PSG, Colwell RR, Daffonchio DG, Danchin A, de Lorenzo V, Dorrestein PC, Finn RD, Fraser CM, Gilbert JA, Hallam SJ, Hugenholtz P, Ioannidis JPA, Jansson JK, Kim JF, Klenk HP, Klotz MG, Knight R, Konstantinidis KT, Kyrpides NC, Mason CE, McHardy AC, Meyer F, Ouzounis CA, Patrinos AAN, Podar M, Pollard KS, Ravel J, Muñoz AR, Roberts RJ, Rosselló-Móra R, Sansone SA, Schloss PD, Schriml LM, Setubal JC, Sorek R, Stevens RL, Tiedje JM, Turjanski A, Tyson GW, Ussery DW, Weinstock GM, White O, Whitman WB, Xenarios I.

Science. 2019 Jan 25;363(6425):350-352. doi: 10.1126/science.aaw1280. No abstract available.

9.

Metagenome sequencing-based strain-level and functional characterization of supragingival microbiome associated with dental caries in children.

Al-Hebshi NN, Baraniya D, Chen T, Hill J, Puri S, Tellez M, Hasan NA, Colwell RR, Ismail A.

J Oral Microbiol. 2018 Dec 28;11(1):1557986. doi: 10.1080/20002297.2018.1557986. eCollection 2019.

10.

Potential application of SMART II for Vibrio cholerae O1 and O139 detection in ship's ballast water.

Chen A, Tamburri MN, Colwell RR, Huq A.

Mar Pollut Bull. 2018 Nov;136:79-83. doi: 10.1016/j.marpolbul.2018.08.029. Epub 2018 Sep 8.

PMID:
30509844
11.

Characterization of the Microbiome at the World's Largest Potable Water Reuse Facility.

Stamps BW, Leddy MB, Plumlee MH, Hasan NA, Colwell RR, Spear JR.

Front Microbiol. 2018 Oct 26;9:2435. doi: 10.3389/fmicb.2018.02435. eCollection 2018.

12.

A Metagenomic Approach to Evaluating Surface Water Quality in Haiti.

Roy MA, Arnaud JM, Jasmin PM, Hamner S, Hasan NA, Colwell RR, Ford TE.

Int J Environ Res Public Health. 2018 Oct 10;15(10). pii: E2211. doi: 10.3390/ijerph15102211.

13.

Environmental and hydroclimatic factors influencing Vibrio populations in the estuarine zone of the Bengal delta.

Neogi SB, Lara R, Alam M, Harder J, Yamasaki S, Colwell RR.

Environ Monit Assess. 2018 Sep 3;190(10):565. doi: 10.1007/s10661-018-6925-7.

PMID:
30178153
14.

Comparison of Infant Gut and Skin Microbiota, Resistome and Virulome Between Neonatal Intensive Care Unit (NICU) Environments.

Hourigan SK, Subramanian P, Hasan NA, Ta A, Klein E, Chettout N, Huddleston K, Deopujari V, Levy S, Baveja R, Clemency NC, Baker RL, Niederhuber JE, Colwell RR.

Front Microbiol. 2018 Jun 25;9:1361. doi: 10.3389/fmicb.2018.01361. eCollection 2018.

15.

Distinct consequences of amoxicillin and ertapenem exposure in the porcine gut microbiome.

Connelly S, Subramanian P, Hasan NA, Colwell RR, Kaleko M.

Anaerobe. 2018 Oct;53:82-93. doi: 10.1016/j.anaerobe.2018.04.012. Epub 2018 Apr 22.

PMID:
29689301
16.

Biofilms Comprise a Component of the Annual Cycle of Vibrio cholerae in the Bay of Bengal Estuary.

Sultana M, Nusrin S, Hasan NA, Sadique A, Ahmed KU, Islam A, Hossain A, Longini I, Nizam A, Huq A, Siddique AK, Sack DA, Sack RB, Colwell RR, Alam M.

MBio. 2018 Apr 17;9(2). pii: e00483-18. doi: 10.1128/mBio.00483-18.

17.

Virulence-Related Genes Identified from the Genome Sequence of the Non-O1/Non-O139 Vibrio cholerae Strain VcN1, Isolated from Dhaka, Bangladesh.

Hossain M, Alam M, Khaleque A, Islam S, Sadique A, Khan N, Halim Z, Sarker M, El-Sayed NM, Huq A, Ahsan GU, Colwell RR.

Genome Announc. 2018 Mar 8;6(10). pii: e01513-17. doi: 10.1128/genomeA.01513-17.

18.

Characterization of Pathogenic Vibrio parahaemolyticus from the Chesapeake Bay, Maryland.

Chen AJ, Hasan NA, Haley BJ, Taviani E, Tarnowski M, Brohawn K, Johnson CN, Colwell RR, Huq A.

Front Microbiol. 2017 Dec 15;8:2460. doi: 10.3389/fmicb.2017.02460. eCollection 2017.

19.

Characterization of Two Cryptic Plasmids Isolated in Haiti from Clinical Vibrio cholerae Non-O1/Non-O139.

Ceccarelli D, Garriss G, Choi SY, Hasan NA, Stepanauskas R, Pop M, Huq A, Colwell RR.

Front Microbiol. 2017 Nov 23;8:2283. doi: 10.3389/fmicb.2017.02283. eCollection 2017.

20.

The microbiomes of blowflies and houseflies as bacterial transmission reservoirs.

Junqueira ACM, Ratan A, Acerbi E, Drautz-Moses DI, Premkrishnan BNV, Costea PI, Linz B, Purbojati RW, Paulo DF, Gaultier NE, Subramanian P, Hasan NA, Colwell RR, Bork P, Azeredo-Espin AML, Bryant DA, Schuster SC.

Sci Rep. 2017 Nov 24;7(1):16324. doi: 10.1038/s41598-017-16353-x.

21.

Comprehensive benchmarking and ensemble approaches for metagenomic classifiers.

McIntyre ABR, Ounit R, Afshinnekoo E, Prill RJ, Hénaff E, Alexander N, Minot SS, Danko D, Foox J, Ahsanuddin S, Tighe S, Hasan NA, Subramanian P, Moffat K, Levy S, Lonardi S, Greenfield N, Colwell RR, Rosen GL, Mason CE.

Genome Biol. 2017 Sep 21;18(1):182. doi: 10.1186/s13059-017-1299-7. Erratum in: Genome Biol. 2019 Apr 5;20(1):72.

22.

Occurrence of Vibrio cholerae in water reservoirs of Burkina Faso.

Kaboré S, Cecchi P, Mosser T, Toubiana M, Traoré O, Ouattara AS, Traoré AS, Barro N, Colwell RR, Monfort P.

Res Microbiol. 2018 Jan;169(1):1-10. doi: 10.1016/j.resmic.2017.08.004. Epub 2017 Sep 6.

PMID:
28888938
23.

Comparative Genomics of Escherichia coli Isolated from Skin and Soft Tissue and Other Extraintestinal Infections.

Ranjan A, Shaik S, Nandanwar N, Hussain A, Tiwari SK, Semmler T, Jadhav S, Wieler LH, Alam M, Colwell RR, Ahmed N.

MBio. 2017 Aug 15;8(4). pii: e01070-17. doi: 10.1128/mBio.01070-17.

24.

Comparative genomic analysis and characterization of incompatibility group FIB plasmid encoded virulence factors of Salmonella enterica isolated from food sources.

Khajanchi BK, Hasan NA, Choi SY, Han J, Zhao S, Colwell RR, Cerniglia CE, Foley SL.

BMC Genomics. 2017 Aug 2;18(1):570. doi: 10.1186/s12864-017-3954-5.

25.

Vibrio cholerae O1 with Reduced Susceptibility to Ciprofloxacin and Azithromycin Isolated from a Rural Coastal Area of Bangladesh.

Rashed SM, Hasan NA, Alam M, Sadique A, Sultana M, Hoq MM, Sack RB, Colwell RR, Huq A.

Front Microbiol. 2017 Feb 21;8:252. doi: 10.3389/fmicb.2017.00252. eCollection 2017.

26.

CRISPR-Cas and Contact-Dependent Secretion Systems Present on Excisable Pathogenicity Islands with Conserved Recombination Modules.

Carpenter MR, Kalburge SS, Borowski JD, Peters MC, Colwell RR, Boyd EF.

J Bacteriol. 2017 Apr 25;199(10). pii: e00842-16. doi: 10.1128/JB.00842-16. Print 2017 May 15.

27.

SYN-004 (ribaxamase), an oral beta-lactamase, mitigates antibiotic-mediated dysbiosis in a porcine gut microbiome model.

Connelly S, Bristol JA, Hubert S, Subramanian P, Hasan NA, Colwell RR, Kaleko M.

J Appl Microbiol. 2017 Jul;123(1):66-79. doi: 10.1111/jam.13432. Epub 2017 May 23.

PMID:
28245091
28.

Application of a paper based device containing a new culture medium to detect Vibrio cholerae in water samples collected in Haiti.

Briquaire R, Colwell RR, Boncy J, Rossignol E, Dardy A, Pandini I, Villeval F, Machuron JL, Huq A, Rashed S, Vandevelde T, Rozand C.

J Microbiol Methods. 2017 Feb;133:23-31. doi: 10.1016/j.mimet.2016.12.014. Epub 2016 Dec 19.

PMID:
28007529
29.

Reduced Susceptibility to Extended-Spectrum β-Lactams in Vibrio cholerae Isolated in Bangladesh.

Ceccarelli D, Alam M, Huq A, Colwell RR.

Front Public Health. 2016 Oct 18;4:231. eCollection 2016.

30.

Climate influence on Vibrio and associated human diseases during the past half-century in the coastal North Atlantic.

Vezzulli L, Grande C, Reid PC, Hélaouët P, Edwards M, Höfle MG, Brettar I, Colwell RR, Pruzzo C.

Proc Natl Acad Sci U S A. 2016 Aug 23;113(34):E5062-71. doi: 10.1073/pnas.1609157113. Epub 2016 Aug 8.

31.

IncA/C Conjugative Plasmids Mobilize a New Family of Multidrug Resistance Islands in Clinical Vibrio cholerae Non-O1/Non-O139 Isolates from Haiti.

Carraro N, Rivard N, Ceccarelli D, Colwell RR, Burrus V.

MBio. 2016 Jul 19;7(4). pii: e00509-16. doi: 10.1128/mBio.00509-16.

32.

Are natural reservoirs important for cholera surveillance? The case of an outbreak in a Brazilian estuary.

Martinelli Filho JE, Lopes RM, Rivera IN, Colwell RR.

Lett Appl Microbiol. 2016 Sep;63(3):183-8. doi: 10.1111/lam.12614. Epub 2016 Aug 5.

PMID:
27416521
33.

Comparison of inferred relatedness based on multilocus variable-number tandem-repeat analysis and whole genome sequencing of Vibrio cholerae O1.

Rashid MU, Almeida M, Azman AS, Lindsay BR, Sack DA, Colwell RR, Huq A, Morris JG Jr, Alam M, Stine OC.

FEMS Microbiol Lett. 2016 Jun;363(12). pii: fnw116. doi: 10.1093/femsle/fnw116. Epub 2016 Apr 28.

34.

Phylogenetic Diversity of Vibrio cholerae Associated with Endemic Cholera in Mexico from 1991 to 2008.

Choi SY, Rashed SM, Hasan NA, Alam M, Islam T, Sadique A, Johura FT, Eppinger M, Ravel J, Huq A, Cravioto A, Colwell RR.

MBio. 2016 Mar 15;7(2):e02160. doi: 10.1128/mBio.02160-15.

35.

Cross-talk among flesh-eating Aeromonas hydrophila strains in mixed infection leading to necrotizing fasciitis.

Ponnusamy D, Kozlova EV, Sha J, Erova TE, Azar SR, Fitts EC, Kirtley ML, Tiner BL, Andersson JA, Grim CJ, Isom RP, Hasan NA, Colwell RR, Chopra AK.

Proc Natl Acad Sci U S A. 2016 Jan 19;113(3):722-7. doi: 10.1073/pnas.1523817113. Epub 2016 Jan 5.

36.

Building Infectious Disease Research Programs to Promote Security and Enhance Collaborations with Countries of the Former Soviet Union.

Bartholomew JC, Pearson AD, Stenseth NC, LeDuc JW, Hirschberg DL, Colwell RR.

Front Public Health. 2015 Nov 26;3:271. doi: 10.3389/fpubh.2015.00271. eCollection 2015. Review.

37.

Occurrence and Diversity of Clinically Important Vibrio Species in the Aquatic Environment of Georgia.

Kokashvili T, Whitehouse CA, Tskhvediani A, Grim CJ, Elbakidze T, Mitaishvili N, Janelidze N, Jaiani E, Haley BJ, Lashkhi N, Huq A, Colwell RR, Tediashvili M.

Front Public Health. 2015 Oct 13;3:232. doi: 10.3389/fpubh.2015.00232. eCollection 2015.

38.

Molecular tools in understanding the evolution of Vibrio cholerae.

Rahaman MH, Islam T, Colwell RR, Alam M.

Front Microbiol. 2015 Oct 6;6:1040. doi: 10.3389/fmicb.2015.01040. eCollection 2015. Review.

39.

Rapid proliferation of Vibrio parahaemolyticus, Vibrio vulnificus, and Vibrio cholerae during freshwater flash floods in French Mediterranean coastal lagoons.

Esteves K, Hervio-Heath D, Mosser T, Rodier C, Tournoud MG, Jumas-Bilak E, Colwell RR, Monfort P.

Appl Environ Microbiol. 2015 Nov;81(21):7600-9. doi: 10.1128/AEM.01848-15. Epub 2015 Aug 28.

40.

Deep-sea hydrothermal vent bacteria related to human pathogenic Vibrio species.

Hasan NA, Grim CJ, Lipp EK, Rivera IN, Chun J, Haley BJ, Taviani E, Choi SY, Hoq M, Munk AC, Brettin TS, Bruce D, Challacombe JF, Detter JC, Han CS, Eisen JA, Huq A, Colwell RR.

Proc Natl Acad Sci U S A. 2015 May 26;112(21):E2813-9. doi: 10.1073/pnas.1503928112. Epub 2015 May 11.

41.

Hybrid Vibrio cholerae El Tor lacking SXT identified as the cause of a cholera outbreak in the Philippines.

Klinzing DC, Choi SY, Hasan NA, Matias RR, Tayag E, Geronimo J, Skowronski E, Rashed SM, Kawashima K, Rosenzweig CN, Gibbons HS, Torres BC, Liles V, Alfon AC, Juan ML, Natividad FF, Cebula TA, Colwell RR.

MBio. 2015 Apr 21;6(2). pii: e00047-15. doi: 10.1128/mBio.00047-15.

42.

Concordance and discordance of sequence survey methods for molecular epidemiology.

Castro-Nallar E, Hasan NA, Cebula TA, Colwell RR, Robison RA, Johnson WE, Crandall KA.

PeerJ. 2015 Feb 17;3:e761. doi: 10.7717/peerj.761. eCollection 2015.

43.

Diagnostic approach for monitoring hydroclimatic conditions related to emergence of west nile virus in west virginia.

Jutla A, Huq A, Colwell RR.

Front Public Health. 2015 Feb 12;3:10. doi: 10.3389/fpubh.2015.00010. eCollection 2015.

44.

Non-O1/non-O139 Vibrio cholerae carrying multiple virulence factors and V. cholerae O1 in the Chesapeake Bay, Maryland.

Ceccarelli D, Chen A, Hasan NA, Rashed SM, Huq A, Colwell RR.

Appl Environ Microbiol. 2015 Mar;81(6):1909-18. doi: 10.1128/AEM.03540-14. Epub 2015 Jan 2.

45.

Phylodynamic analysis of clinical and environmental Vibrio cholerae isolates from Haiti reveals diversification driven by positive selection.

Azarian T, Ali A, Johnson JA, Mohr D, Prosperi M, Veras NM, Jubair M, Strickland SL, Rashid MH, Alam MT, Weppelmann TA, Katz LS, Tarr CL, Colwell RR, Morris JG Jr, Salemi M.

MBio. 2014 Dec 23;5(6). pii: e01824-14. doi: 10.1128/mBio.01824-14.

46.

Environmental surveillance for toxigenic Vibrio cholerae in surface waters of Haiti.

Kahler AM, Haley BJ, Chen A, Mull BJ, Tarr CL, Turnsek M, Katz LS, Humphrys MS, Derado G, Freeman N, Boncy J, Colwell RR, Huq A, Hill VR.

Am J Trop Med Hyg. 2015 Jan;92(1):118-25. doi: 10.4269/ajtmh.13-0601. Epub 2014 Nov 10.

47.

Nontoxigenic Vibrio cholerae non-O1/O139 isolate from a case of human gastroenteritis in the U.S. Gulf Coast.

Hasan NA, Rezayat T, Blatz PJ, Choi SY, Griffitt KJ, Rashed SM, Huq A, Conger NG, Colwell RR, Grimes DJ.

J Clin Microbiol. 2015 Jan;53(1):9-14. doi: 10.1128/JCM.02187-14. Epub 2014 Oct 22.

48.

Acquisition and evolution of SXT-R391 integrative conjugative elements in the seventh-pandemic Vibrio cholerae lineage.

Spagnoletti M, Ceccarelli D, Rieux A, Fondi M, Taviani E, Fani R, Colombo MM, Colwell RR, Balloux F.

MBio. 2014 Aug 19;5(4). pii: e01356-14. doi: 10.1128/mBio.01356-14.

49.

Global diarrhoea action plan needs integrated climate-based surveillance.

Akanda AS, Jutla AS, Colwell RR.

Lancet Glob Health. 2014 Feb;2(2):e69-70. doi: 10.1016/S2214-109X(13)70155-4. Epub 2014 Jan 23. No abstract available.

50.

Validation of high throughput sequencing and microbial forensics applications.

Budowle B, Connell ND, Bielecka-Oder A, Colwell RR, Corbett CR, Fletcher J, Forsman M, Kadavy DR, Markotic A, Morse SA, Murch RS, Sajantila A, Schmedes SE, Ternus KL, Turner SD, Minot S.

Investig Genet. 2014 Jul 30;5:9. doi: 10.1186/2041-2223-5-9. eCollection 2014. Review.

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