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Items: 1 to 50 of 644

1.

Building mountain biodiversity: Geological and evolutionary processes.

Rahbek C, Borregaard MK, Antonelli A, Colwell RK, Holt BG, Nogues-Bravo D, Rasmussen CMØ, Richardson K, Rosing MT, Whittaker RJ, Fjeldså J.

Science. 2019 Sep 13;365(6458):1114-1119. doi: 10.1126/science.aax0151. Review.

PMID:
31515384
2.

Humboldt's enigma: What causes global patterns of mountain biodiversity?

Rahbek C, Borregaard MK, Colwell RK, Dalsgaard B, Holt BG, Morueta-Holme N, Nogues-Bravo D, Whittaker RJ, Fjeldså J.

Science. 2019 Sep 13;365(6458):1108-1113. doi: 10.1126/science.aax0149. Review.

PMID:
31515383
3.

Prosthetic joint infections present diverse and unique microbial communities using combined whole-genome shotgun sequencing and culturing methods.

Weaver AA, Hasan NA, Klaassen M, Karathia H, Colwell RR, Shrout JD.

J Med Microbiol. 2019 Oct;68(10):1507-1516. doi: 10.1099/jmm.0.001068.

PMID:
31460858
4.

Proportional mixture of two rarefaction/extrapolation curves to forecast biodiversity changes under landscape transformation.

Chao A, Colwell RK, Gotelli NJ, Thorn S.

Ecol Lett. 2019 Nov;22(11):1913-1922. doi: 10.1111/ele.13322. Epub 2019 Aug 5.

PMID:
31385450
5.

Oral Beta-Lactamase Protects the Canine Gut Microbiome from Oral Amoxicillin-Mediated Damage.

Connelly S, Fanelli B, Hasan NA, Colwell RR, Kaleko M.

Microorganisms. 2019 May 27;7(5). pii: E150. doi: 10.3390/microorganisms7050150.

6.

Consent insufficient for data release-Response.

Amann RI, Baichoo S, Blencowe BJ, Bork P, Borodovsky M, Brooksbank C, Chain PSG, Colwell RR, Daffonchio DG, Danchin A, de Lorenzo V, Dorrestein PC, Finn RD, Fraser CM, Gilbert JA, Hallam SJ, Hugenholtz P, Ioannidis JPA, Jansson JK, Kim JF, Klenk HP, Klotz MG, Knight R, Konstantinidis KT, Kyrpides NC, Mason CE, McHardy AC, Meyer F, Ouzounis CA, Patrinos AAN, Podar M, Pollard KS, Ravel J, Muñoz AR, Roberts RJ, Rosselló-Móra R, Sansone SA, Schloss PD, Schriml LM, Setubal JC, Sorek R, Stevens RL, Tiedje JM, Turjanski A, Tyson GW, Ussery DW, Weinstock GM, White O, Whitman WB, Xenarios I.

Science. 2019 May 3;364(6439):446. doi: 10.1126/science.aax7509. No abstract available.

PMID:
31048484
7.

Drinking Water Microbiome Project: Is it Time?

Hull NM, Ling F, Pinto AJ, Albertsen M, Jang HG, Hong PY, Konstantinidis KT, LeChevallier M, Colwell RR, Liu WT.

Trends Microbiol. 2019 Aug;27(8):670-677. doi: 10.1016/j.tim.2019.03.011. Epub 2019 Apr 25. Review.

PMID:
31031092
8.

Correction to: Comprehensive benchmarking and ensemble approaches for metagenomic classifiers.

McIntyre ABR, Ounit R, Afshinnekoo E, Prill RJ, Hénaff E, Alexander N, Minot SS, Danko D, Foox J, Ahsanuddin S, Tighe S, Hasan NA, Subramanian P, Moffat K, Levy S, Lonardi S, Greenfield N, Colwell RR, Rosen GL, Mason CE.

Genome Biol. 2019 Apr 5;20(1):72. doi: 10.1186/s13059-019-1687-2.

9.

Science during crisis.

Colwell RR, Machlis GE.

Science. 2019 Apr 5;364(6435):5. doi: 10.1126/science.aax5052. Epub 2019 Apr 4. No abstract available.

PMID:
30948528
10.

Metagenomic Profiling of Microbial Pathogens in the Little Bighorn River, Montana.

Hamner S, Brown BL, Hasan NA, Franklin MJ, Doyle J, Eggers MJ, Colwell RR, Ford TE.

Int J Environ Res Public Health. 2019 Mar 27;16(7). pii: E1097. doi: 10.3390/ijerph16071097.

11.

Drivers of geographical patterns of North American language diversity.

Pacheco Coelho MT, Pereira EB, Haynie HJ, Rangel TF, Kavanagh P, Kirby KR, Greenhill SJ, Bowern C, Gray RD, Colwell RK, Evans N, Gavin MC.

Proc Biol Sci. 2019 Mar 27;286(1899):20190242. doi: 10.1098/rspb.2019.0242.

PMID:
30914010
12.

Oral Metallo-Beta-Lactamase Protects the Gut Microbiome From Carbapenem-Mediated Damage and Reduces Propagation of Antibiotic Resistance in Pigs.

Connelly S, Fanelli B, Hasan NA, Colwell RR, Kaleko M.

Front Microbiol. 2019 Feb 5;10:101. doi: 10.3389/fmicb.2019.00101. eCollection 2019.

13.

Toward unrestricted use of public genomic data.

Amann RI, Baichoo S, Blencowe BJ, Bork P, Borodovsky M, Brooksbank C, Chain PSG, Colwell RR, Daffonchio DG, Danchin A, de Lorenzo V, Dorrestein PC, Finn RD, Fraser CM, Gilbert JA, Hallam SJ, Hugenholtz P, Ioannidis JPA, Jansson JK, Kim JF, Klenk HP, Klotz MG, Knight R, Konstantinidis KT, Kyrpides NC, Mason CE, McHardy AC, Meyer F, Ouzounis CA, Patrinos AAN, Podar M, Pollard KS, Ravel J, Muñoz AR, Roberts RJ, Rosselló-Móra R, Sansone SA, Schloss PD, Schriml LM, Setubal JC, Sorek R, Stevens RL, Tiedje JM, Turjanski A, Tyson GW, Ussery DW, Weinstock GM, White O, Whitman WB, Xenarios I.

Science. 2019 Jan 25;363(6425):350-352. doi: 10.1126/science.aaw1280. No abstract available.

14.

Metagenome sequencing-based strain-level and functional characterization of supragingival microbiome associated with dental caries in children.

Al-Hebshi NN, Baraniya D, Chen T, Hill J, Puri S, Tellez M, Hasan NA, Colwell RR, Ismail A.

J Oral Microbiol. 2018 Dec 28;11(1):1557986. doi: 10.1080/20002297.2018.1557986. eCollection 2019.

15.

Potential application of SMART II for Vibrio cholerae O1 and O139 detection in ship's ballast water.

Chen A, Tamburri MN, Colwell RR, Huq A.

Mar Pollut Bull. 2018 Nov;136:79-83. doi: 10.1016/j.marpolbul.2018.08.029. Epub 2018 Sep 8.

PMID:
30509844
16.

Characterization of the Microbiome at the World's Largest Potable Water Reuse Facility.

Stamps BW, Leddy MB, Plumlee MH, Hasan NA, Colwell RR, Spear JR.

Front Microbiol. 2018 Oct 26;9:2435. doi: 10.3389/fmicb.2018.02435. eCollection 2018.

17.

A Metagenomic Approach to Evaluating Surface Water Quality in Haiti.

Roy MA, Arnaud JM, Jasmin PM, Hamner S, Hasan NA, Colwell RR, Ford TE.

Int J Environ Res Public Health. 2018 Oct 10;15(10). pii: E2211. doi: 10.3390/ijerph15102211.

18.

Environmental and hydroclimatic factors influencing Vibrio populations in the estuarine zone of the Bengal delta.

Neogi SB, Lara R, Alam M, Harder J, Yamasaki S, Colwell RR.

Environ Monit Assess. 2018 Sep 3;190(10):565. doi: 10.1007/s10661-018-6925-7.

PMID:
30178153
19.

Modeling the ecology and evolution of biodiversity: Biogeographical cradles, museums, and graves.

Rangel TF, Edwards NR, Holden PB, Diniz-Filho JAF, Gosling WD, Coelho MTP, Cassemiro FAS, Rahbek C, Colwell RK.

Science. 2018 Jul 20;361(6399). pii: eaar5452. doi: 10.1126/science.aar5452.

PMID:
30026200
20.

Comparison of Infant Gut and Skin Microbiota, Resistome and Virulome Between Neonatal Intensive Care Unit (NICU) Environments.

Hourigan SK, Subramanian P, Hasan NA, Ta A, Klein E, Chettout N, Huddleston K, Deopujari V, Levy S, Baveja R, Clemency NC, Baker RL, Niederhuber JE, Colwell RR.

Front Microbiol. 2018 Jun 25;9:1361. doi: 10.3389/fmicb.2018.01361. eCollection 2018.

21.

Spores and soil from six sides: interdisciplinarity and the environmental biology of anthrax (Bacillus anthracis).

Carlson CJ, Getz WM, Kausrud KL, Cizauskas CA, Blackburn JK, Bustos Carrillo FA, Colwell R, Easterday WR, Ganz HH, Kamath PL, Økstad OA, Turner WC, Kolstø AB, Stenseth NC.

Biol Rev Camb Philos Soc. 2018 Nov;93(4):1813-1831. doi: 10.1111/brv.12420. Epub 2018 May 6. Review.

22.

Distinct consequences of amoxicillin and ertapenem exposure in the porcine gut microbiome.

Connelly S, Subramanian P, Hasan NA, Colwell RR, Kaleko M.

Anaerobe. 2018 Oct;53:82-93. doi: 10.1016/j.anaerobe.2018.04.012. Epub 2018 Apr 22.

PMID:
29689301
23.

Biofilms Comprise a Component of the Annual Cycle of Vibrio cholerae in the Bay of Bengal Estuary.

Sultana M, Nusrin S, Hasan NA, Sadique A, Ahmed KU, Islam A, Hossain A, Longini I, Nizam A, Huq A, Siddique AK, Sack DA, Sack RB, Colwell RR, Alam M.

MBio. 2018 Apr 17;9(2). pii: e00483-18. doi: 10.1128/mBio.00483-18.

24.

Virulence-Related Genes Identified from the Genome Sequence of the Non-O1/Non-O139 Vibrio cholerae Strain VcN1, Isolated from Dhaka, Bangladesh.

Hossain M, Alam M, Khaleque A, Islam S, Sadique A, Khan N, Halim Z, Sarker M, El-Sayed NM, Huq A, Ahsan GU, Colwell RR.

Genome Announc. 2018 Mar 8;6(10). pii: e01513-17. doi: 10.1128/genomeA.01513-17.

25.

Characterization of Pathogenic Vibrio parahaemolyticus from the Chesapeake Bay, Maryland.

Chen AJ, Hasan NA, Haley BJ, Taviani E, Tarnowski M, Brohawn K, Johnson CN, Colwell RR, Huq A.

Front Microbiol. 2017 Dec 15;8:2460. doi: 10.3389/fmicb.2017.02460. eCollection 2017.

26.

Mechanism, Process, and Causation in Ecological Models: A Reply to McGill and Potochnik.

Connolly SR, Keith SA, Colwell RK, Rahbek C.

Trends Ecol Evol. 2018 May;33(5):305-306. doi: 10.1016/j.tree.2017.11.009. Epub 2017 Dec 23. No abstract available.

PMID:
29279296
27.

Characterization of Two Cryptic Plasmids Isolated in Haiti from Clinical Vibrio cholerae Non-O1/Non-O139.

Ceccarelli D, Garriss G, Choi SY, Hasan NA, Stepanauskas R, Pop M, Huq A, Colwell RR.

Front Microbiol. 2017 Nov 23;8:2283. doi: 10.3389/fmicb.2017.02283. eCollection 2017.

28.

The microbiomes of blowflies and houseflies as bacterial transmission reservoirs.

Junqueira ACM, Ratan A, Acerbi E, Drautz-Moses DI, Premkrishnan BNV, Costea PI, Linz B, Purbojati RW, Paulo DF, Gaultier NE, Subramanian P, Hasan NA, Colwell RR, Bork P, Azeredo-Espin AML, Bryant DA, Schuster SC.

Sci Rep. 2017 Nov 24;7(1):16324. doi: 10.1038/s41598-017-16353-x.

29.

Comprehensive benchmarking and ensemble approaches for metagenomic classifiers.

McIntyre ABR, Ounit R, Afshinnekoo E, Prill RJ, Hénaff E, Alexander N, Minot SS, Danko D, Foox J, Ahsanuddin S, Tighe S, Hasan NA, Subramanian P, Moffat K, Levy S, Lonardi S, Greenfield N, Colwell RR, Rosen GL, Mason CE.

Genome Biol. 2017 Sep 21;18(1):182. doi: 10.1186/s13059-017-1299-7. Erratum in: Genome Biol. 2019 Apr 5;20(1):72.

30.

Process, Mechanism, and Modeling in Macroecology.

Connolly SR, Keith SA, Colwell RK, Rahbek C.

Trends Ecol Evol. 2017 Nov;32(11):835-844. doi: 10.1016/j.tree.2017.08.011. Epub 2017 Sep 14. Review.

PMID:
28919203
31.

Not just Salk.

Greider C, Hopkins N, Steitz J, Amon A, Asai D, Barres B, Bass B, Bassler B, Birgeneau R, Bjorkman P, Botchan M, Brugge J, Cech T, Colwell R, Craig N, deLange T, Eisen M, Gottesman S, Green R, Handelsman J, Kimble J, King MC, Lehmann R, Marder E, Mullins D, O'Shea E, Schmid S, Seydoux G, Spradling A, Storz G, Szostak J, Telesnitsky A, Tilghman S, Tjian R, Vale R, Wolberger C, Zakian V.

Science. 2017 Sep 15;357(6356):1105-1106. doi: 10.1126/science.aao6221. No abstract available.

PMID:
28912235
32.

Occurrence of Vibrio cholerae in water reservoirs of Burkina Faso.

Kaboré S, Cecchi P, Mosser T, Toubiana M, Traoré O, Ouattara AS, Traoré AS, Barro N, Colwell RR, Monfort P.

Res Microbiol. 2018 Jan;169(1):1-10. doi: 10.1016/j.resmic.2017.08.004. Epub 2017 Sep 6.

PMID:
28888938
33.

Deciphering the enigma of undetected species, phylogenetic, and functional diversity based on Good-Turing theory.

Chao A, Chiu CH, Colwell RK, Magnago LFS, Chazdon RL, Gotelli NJ.

Ecology. 2017 Nov;98(11):2914-2929. doi: 10.1002/ecy.2000.

PMID:
28869780
34.

Comparative Genomics of Escherichia coli Isolated from Skin and Soft Tissue and Other Extraintestinal Infections.

Ranjan A, Shaik S, Nandanwar N, Hussain A, Tiwari SK, Semmler T, Jadhav S, Wieler LH, Alam M, Colwell RR, Ahmed N.

MBio. 2017 Aug 15;8(4). pii: e01070-17. doi: 10.1128/mBio.01070-17.

35.

Comparative genomic analysis and characterization of incompatibility group FIB plasmid encoded virulence factors of Salmonella enterica isolated from food sources.

Khajanchi BK, Hasan NA, Choi SY, Han J, Zhao S, Colwell RR, Cerniglia CE, Foley SL.

BMC Genomics. 2017 Aug 2;18(1):570. doi: 10.1186/s12864-017-3954-5.

36.

Assessment of Risk of Cholera in Haiti following Hurricane Matthew.

Khan R, Anwar R, Akanda S, McDonald MD, Huq A, Jutla A, Colwell R.

Am J Trop Med Hyg. 2017 Sep;97(3):896-903. doi: 10.4269/ajtmh.17-0048. Epub 2017 Jul 27.

37.

Managing consequences of climate-driven species redistribution requires integration of ecology, conservation and social science.

Bonebrake TC, Brown CJ, Bell JD, Blanchard JL, Chauvenet A, Champion C, Chen IC, Clark TD, Colwell RK, Danielsen F, Dell AI, Donelson JM, Evengård B, Ferrier S, Frusher S, Garcia RA, Griffis RB, Hobday AJ, Jarzyna MA, Lee E, Lenoir J, Linnetved H, Martin VY, McCormack PC, McDonald J, McDonald-Madden E, Mitchell N, Mustonen T, Pandolfi JM, Pettorelli N, Possingham H, Pulsifer P, Reynolds M, Scheffers BR, Sorte CJB, Strugnell JM, Tuanmu MN, Twiname S, Vergés A, Villanueva C, Wapstra E, Wernberg T, Pecl GT.

Biol Rev Camb Philos Soc. 2018 Feb;93(1):284-305. doi: 10.1111/brv.12344. Epub 2017 Jun 1. Review.

38.

Biodiversity redistribution under climate change: Impacts on ecosystems and human well-being.

Pecl GT, Araújo MB, Bell JD, Blanchard J, Bonebrake TC, Chen IC, Clark TD, Colwell RK, Danielsen F, Evengård B, Falconi L, Ferrier S, Frusher S, Garcia RA, Griffis RB, Hobday AJ, Janion-Scheepers C, Jarzyna MA, Jennings S, Lenoir J, Linnetved HI, Martin VY, McCormack PC, McDonald J, Mitchell NJ, Mustonen T, Pandolfi JM, Pettorelli N, Popova E, Robinson SA, Scheffers BR, Shaw JD, Sorte CJ, Strugnell JM, Sunday JM, Tuanmu MN, Vergés A, Villanueva C, Wernberg T, Wapstra E, Williams SE.

Science. 2017 Mar 31;355(6332). pii: eaai9214. doi: 10.1126/science.aai9214. Review.

39.

Genomic Methods and Microbiological Technologies for Profiling Novel and Extreme Environments for the Extreme Microbiome Project (XMP).

Tighe S, Afshinnekoo E, Rock TM, McGrath K, Alexander N, McIntyre A, Ahsanuddin S, Bezdan D, Green SJ, Joye S, Stewart Johnson S, Baldwin DA, Bivens N, Ajami N, Carmical JR, Herriott IC, Colwell R, Donia M, Foox J, Greenfield N, Hunter T, Hoffman J, Hyman J, Jorgensen E, Krawczyk D, Lee J, Levy S, Garcia-Reyero N, Settles M, Thomas K, Gómez F, Schriml L, Kyrpides N, Zaikova E, Penterman J, Mason CE.

J Biomol Tech. 2017 Apr;28(1):31-39. doi: 10.7171/jbt.17-2801-004. Epub 2017 Mar 10. Erratum in: J Biomol Tech. 2017 Jul;28(2):93.

40.

Environment-induced changes in selective constraints on social learning during the peopling of the Americas.

Buchanan B, Chao A, Chiu CH, Colwell RK, O'Brien MJ, Werner A, Eren MI.

Sci Rep. 2017 Mar 16;7:44431. doi: 10.1038/srep44431.

41.

Vibrio cholerae O1 with Reduced Susceptibility to Ciprofloxacin and Azithromycin Isolated from a Rural Coastal Area of Bangladesh.

Rashed SM, Hasan NA, Alam M, Sadique A, Sultana M, Hoq MM, Sack RB, Colwell RR, Huq A.

Front Microbiol. 2017 Feb 21;8:252. doi: 10.3389/fmicb.2017.00252. eCollection 2017.

42.

CRISPR-Cas and Contact-Dependent Secretion Systems Present on Excisable Pathogenicity Islands with Conserved Recombination Modules.

Carpenter MR, Kalburge SS, Borowski JD, Peters MC, Colwell RR, Boyd EF.

J Bacteriol. 2017 Apr 25;199(10). pii: e00842-16. doi: 10.1128/JB.00842-16. Print 2017 May 15.

43.

SYN-004 (ribaxamase), an oral beta-lactamase, mitigates antibiotic-mediated dysbiosis in a porcine gut microbiome model.

Connelly S, Bristol JA, Hubert S, Subramanian P, Hasan NA, Colwell RR, Kaleko M.

J Appl Microbiol. 2017 Jul;123(1):66-79. doi: 10.1111/jam.13432. Epub 2017 May 23.

PMID:
28245091
44.

Natural Disasters and Cholera Outbreaks: Current Understanding and Future Outlook.

Jutla A, Khan R, Colwell R.

Curr Environ Health Rep. 2017 Mar;4(1):99-107. doi: 10.1007/s40572-017-0132-5. Review.

PMID:
28130661
45.

Beyond cost-effectiveness: Using systems analysis for infectious disease preparedness.

Phelps C, Madhavan G, Rappuoli R, Colwell R, Fineberg H.

Vaccine. 2017 Jan 20;35 Suppl 1:A46-A49. doi: 10.1016/j.vaccine.2016.08.090. Epub 2016 Dec 22.

PMID:
28017432
46.

Application of a paper based device containing a new culture medium to detect Vibrio cholerae in water samples collected in Haiti.

Briquaire R, Colwell RR, Boncy J, Rossignol E, Dardy A, Pandini I, Villeval F, Machuron JL, Huq A, Rashed S, Vandevelde T, Rozand C.

J Microbiol Methods. 2017 Feb;133:23-31. doi: 10.1016/j.mimet.2016.12.014. Epub 2016 Dec 19.

PMID:
28007529
47.

Enrichment dynamics of Listeria monocytogenes and the associated microbiome from naturally contaminated ice cream linked to a listeriosis outbreak.

Ottesen A, Ramachandran P, Reed E, White JR, Hasan N, Subramanian P, Ryan G, Jarvis K, Grim C, Daquiqan N, Hanes D, Allard M, Colwell R, Brown E, Chen Y.

BMC Microbiol. 2016 Nov 16;16(1):275.

48.

Reduced Susceptibility to Extended-Spectrum β-Lactams in Vibrio cholerae Isolated in Bangladesh.

Ceccarelli D, Alam M, Huq A, Colwell RR.

Front Public Health. 2016 Oct 18;4:231. eCollection 2016.

49.

Infant gastrostomy outcomes: The cost of complications.

Landisch RM, Colwell RC, Densmore JC.

J Pediatr Surg. 2016 Dec;51(12):1976-1982. doi: 10.1016/j.jpedsurg.2016.09.025. Epub 2016 Sep 15.

PMID:
27678507
50.

Climate influence on Vibrio and associated human diseases during the past half-century in the coastal North Atlantic.

Vezzulli L, Grande C, Reid PC, Hélaouët P, Edwards M, Höfle MG, Brettar I, Colwell RR, Pruzzo C.

Proc Natl Acad Sci U S A. 2016 Aug 23;113(34):E5062-71. doi: 10.1073/pnas.1609157113. Epub 2016 Aug 8.

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