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James Robert Alfano, A Giant in Phytopathogenic Bacteria Effector Biology.

Collmer A.

Mol Plant Microbe Interact. 2020 Mar;33(3):377-381. doi: 10.1094/MPMI-12-19-0354-CR. Epub 2020 Jan 27.


Natural variation for unusual host responses and flagellin-mediated immunity against Pseudomonas syringae in genetically diverse tomato accessions.

Roberts R, Mainiero S, Powell AF, Liu AE, Shi K, Hind SR, Strickler SR, Collmer A, Martin GB.

New Phytol. 2019 Jul;223(1):447-461. doi: 10.1111/nph.15788. Epub 2019 Apr 8.


Defining essential processes in plant pathogenesis with Pseudomonas syringae pv. tomato DC3000 disarmed polymutants and a subset of key type III effectors.

Wei HL, Collmer A.

Mol Plant Pathol. 2018 Jul;19(7):1779-1794. doi: 10.1111/mpp.12655. Epub 2018 Feb 1. Review.


A plant effector-triggered immunity signaling sector is inhibited by pattern-triggered immunity.

Hatsugai N, Igarashi D, Mase K, Lu Y, Tsuda Y, Chakravarthy S, Wei HL, Foley JW, Collmer A, Glazebrook J, Katagiri F.

EMBO J. 2017 Sep 15;36(18):2758-2769. doi: 10.15252/embj.201796529. Epub 2017 Aug 15.


GABA (γ-Aminobutyric Acid) Uptake Via the GABA Permease GabP Represses Virulence Gene Expression in Pseudomonas syringae pv. tomato DC3000.

McCraw SL, Park DH, Jones R, Bentley MA, Rico A, Ratcliffe RG, Kruger NJ, Collmer A, Preston GM.

Mol Plant Microbe Interact. 2016 Dec;29(12):938-949. doi: 10.1094/MPMI-08-16-0172-R. Epub 2016 Dec 21.


Pseudomonas syringae pv. tomato DC3000 Type III Secretion Effector Polymutants Reveal an Interplay between HopAD1 and AvrPtoB.

Wei HL, Chakravarthy S, Mathieu J, Helmann TC, Stodghill P, Swingle B, Martin GB, Collmer A.

Cell Host Microbe. 2015 Jun 10;17(6):752-62. doi: 10.1016/j.chom.2015.05.007.


Genome-Assisted Development of a Diagnostic Protocol for Distinguishing High Virulence Pseudomonas syringae pv. tomato Strains.

Jones LA, Saha S, Collmer A, Smart CD, Lindeberg M.

Plant Dis. 2015 Apr;99(4):527-534. doi: 10.1094/PDIS-08-14-0833-RE.


Global analysis of the HrpL regulon in the plant pathogen Pseudomonas syringae pv. tomato DC3000 reveals new regulon members with diverse functions.

Lam HN, Chakravarthy S, Wei HL, BuiNguyen H, Stodghill PV, Collmer A, Swingle BM, Cartinhour SW.

PLoS One. 2014 Aug 29;9(8):e106115. doi: 10.1371/journal.pone.0106115. eCollection 2014.


Genomic plasticity enables phenotypic variation of Pseudomonas syringae pv. tomato DC3000.

Bao Z, Stodghill PV, Myers CR, Lam H, Wei HL, Chakravarthy S, Kvitko BH, Collmer A, Cartinhour SW, Schweitzer P, Swingle B.

PLoS One. 2014 Feb 6;9(2):e86628. doi: 10.1371/journal.pone.0086628. eCollection 2014.


Transcriptomics-based screen for genes induced by flagellin and repressed by pathogen effectors identifies a cell wall-associated kinase involved in plant immunity.

Rosli HG, Zheng Y, Pombo MA, Zhong S, Bombarely A, Fei Z, Collmer A, Martin GB.

Genome Biol. 2013 Dec 20;14(12):R139. doi: 10.1186/gb-2013-14-12-r139.


Pseudomonas syringae pv. tomato DC3000 CmaL (PSPTO4723), a DUF1330 family member, is needed to produce L-allo-isoleucine, a precursor for the phytotoxin coronatine.

Worley JN, Russell AB, Wexler AG, Bronstein PA, Kvitko BH, Krasnoff SB, Munkvold KR, Swingle B, Gibson DM, Collmer A.

J Bacteriol. 2013 Jan;195(2):287-96. doi: 10.1128/JB.01352-12. Epub 2012 Nov 9.


Multiple lessons from the multiple functions of a regulator of type III secretion system assembly in the plant pathogen Pseudomonas syringae.

Wei HL, Collmer A.

Mol Microbiol. 2012 Jul;85(2):195-200. doi: 10.1111/j.1365-2958.2012.08119.x. Epub 2012 Jun 14.


Functional and computational analysis of amino acid patterns predictive of type III secretion system substrates in Pseudomonas syringae.

Schechter LM, Valenta JC, Schneider DJ, Collmer A, Sakk E.

PLoS One. 2012;7(4):e36038. doi: 10.1371/journal.pone.0036038. Epub 2012 Apr 27.


Pseudomonas syringae type III effector repertoires: last words in endless arguments.

Lindeberg M, Cunnac S, Collmer A.

Trends Microbiol. 2012 Apr;20(4):199-208. doi: 10.1016/j.tim.2012.01.003. Epub 2012 Feb 16. Review.


A bacterial cysteine protease effector protein interferes with photosynthesis to suppress plant innate immune responses.

Rodríguez-Herva JJ, González-Melendi P, Cuartas-Lanza R, Antúnez-Lamas M, Río-Alvarez I, Li Z, López-Torrejón G, Díaz I, Del Pozo JC, Chakravarthy S, Collmer A, Rodríguez-Palenzuela P, López-Solanilla E.

Cell Microbiol. 2012 May;14(5):669-81. doi: 10.1111/j.1462-5822.2012.01749.x. Epub 2012 Feb 15.


Construction of Pseudomonas syringae pv. tomato DC3000 mutant and polymutant strains.

Kvitko BH, Collmer A.

Methods Mol Biol. 2011;712:109-28. doi: 10.1007/978-1-61737-998-7_10.


Genetic disassembly and combinatorial reassembly identify a minimal functional repertoire of type III effectors in Pseudomonas syringae.

Cunnac S, Chakravarthy S, Kvitko BH, Russell AB, Martin GB, Collmer A.

Proc Natl Acad Sci U S A. 2011 Feb 15;108(7):2975-80. doi: 10.1073/pnas.1013031108. Epub 2011 Jan 31.


Unifying themes in microbial associations with animal and plant hosts described using the gene ontology.

Torto-Alalibo T, Collmer CW, Gwinn-Giglio M, Lindeberg M, Meng S, Chibucos MC, Tseng TT, Lomax J, Biehl B, Ireland A, Bird D, Dean RA, Glasner JD, Perna N, Setubal JC, Collmer A, Tyler BM.

Microbiol Mol Biol Rev. 2010 Dec;74(4):479-503. doi: 10.1128/MMBR.00017-10. Review.


Mutations in γ-aminobutyric acid (GABA) transaminase genes in plants or Pseudomonas syringae reduce bacterial virulence.

Park DH, Mirabella R, Bronstein PA, Preston GM, Haring MA, Lim CK, Collmer A, Schuurink RC.

Plant J. 2010 Oct;64(2):318-30. doi: 10.1111/j.1365-313X.2010.04327.x. Epub 2010 Sep 7.


Studying plant-pathogen interactions in the genomics era: beyond molecular Koch's postulates to systems biology.

Schneider DJ, Collmer A.

Annu Rev Phytopathol. 2010;48:457-79. doi: 10.1146/annurev-phyto-073009-114411. Review.


Methods to study PAMP-triggered immunity using tomato and Nicotiana benthamiana.

Nguyen HP, Chakravarthy S, Velásquez AC, McLane HL, Zeng L, Nakayashiki H, Park DH, Collmer A, Martin GB.

Mol Plant Microbe Interact. 2010 Aug;23(8):991-9. doi: 10.1094/MPMI-23-8-0991.


Components of the Pseudomonas syringae type III secretion system can suppress and may elicit plant innate immunity.

Oh HS, Park DH, Collmer A.

Mol Plant Microbe Interact. 2010 Jun;23(6):727-39. doi: 10.1094/MPMI-23-6-0727.


Identification of Nicotiana benthamiana genes involved in pathogen-associated molecular pattern-triggered immunity.

Chakravarthy S, Velásquez AC, Ekengren SK, Collmer A, Martin GB.

Mol Plant Microbe Interact. 2010 Jun;23(6):715-26. doi: 10.1094/MPMI-23-6-0715.


The evolution of Pseudomonas syringae host specificity and type III effector repertoires.

Lindeberg M, Cunnac S, Collmer A.

Mol Plant Pathol. 2009 Nov;10(6):767-75. doi: 10.1111/j.1364-3703.2009.00587.x. Review.


Pseudomonas syringae pv. tomato DC3000 type III effector HopAA1-1 functions redundantly with chlorosis-promoting factor PSPTO4723 to produce bacterial speck lesions in host tomato.

Munkvold KR, Russell AB, Kvitko BH, Collmer A.

Mol Plant Microbe Interact. 2009 Nov;22(11):1341-55. doi: 10.1094/MPMI-22-11-1341.


Gene Ontology for type III effectors: capturing processes at the host-pathogen interface.

Lindeberg M, Collmer A.

Trends Microbiol. 2009 Jul;17(7):304-11. doi: 10.1016/j.tim.2009.04.001. Epub 2009 Jul 1. Review.


Lifestyles of the effector rich: genome-enabled characterization of bacterial plant pathogens.

Collmer A, Schneider DJ, Lindeberg M.

Plant Physiol. 2009 Aug;150(4):1623-30. doi: 10.1104/pp.109.140327. Epub 2009 Jun 10. Review. No abstract available.


Deletions in the repertoire of Pseudomonas syringae pv. tomato DC3000 type III secretion effector genes reveal functional overlap among effectors.

Kvitko BH, Park DH, Velásquez AC, Wei CF, Russell AB, Martin GB, Schneider DJ, Collmer A.

PLoS Pathog. 2009 Apr;5(4):e1000388. doi: 10.1371/journal.ppat.1000388. Epub 2009 Apr 17.


Common and contrasting themes in host cell-targeted effectors from bacterial, fungal, oomycete and nematode plant symbionts described using the Gene Ontology.

Torto-Alalibo T, Collmer CW, Lindeberg M, Bird D, Collmer A, Tyler BM.

BMC Microbiol. 2009 Feb 19;9 Suppl 1:S3. doi: 10.1186/1471-2180-9-S1-S3. Review.


Pseudomonas syringae type III secretion system effectors: repertoires in search of functions.

Cunnac S, Lindeberg M, Collmer A.

Curr Opin Microbiol. 2009 Feb;12(1):53-60. doi: 10.1016/j.mib.2008.12.003. Epub 2009 Jan 23. Review.


A draft genome sequence of Pseudomonas syringae pv. tomato T1 reveals a type III effector repertoire significantly divergent from that of Pseudomonas syringae pv. tomato DC3000.

Almeida NF, Yan S, Lindeberg M, Studholme DJ, Schneider DJ, Condon B, Liu H, Viana CJ, Warren A, Evans C, Kemen E, Maclean D, Angot A, Martin GB, Jones JD, Collmer A, Setubal JC, Vinatzer BA.

Mol Plant Microbe Interact. 2009 Jan;22(1):52-62. doi: 10.1094/MPMI-22-1-0052.


Roadmap to new virulence determinants in Pseudomonas syringae: insights from comparative genomics and genome organization.

Lindeberg M, Myers CR, Collmer A, Schneider DJ.

Mol Plant Microbe Interact. 2008 Jun;21(6):685-700. doi: 10.1094/MPMI-21-6-0685. Review.


A Pseudomonas syringae pv. tomato DC3000 mutant lacking the type III effector HopQ1-1 is able to cause disease in the model plant Nicotiana benthamiana.

Wei CF, Kvitko BH, Shimizu R, Crabill E, Alfano JR, Lin NC, Martin GB, Huang HC, Collmer A.

Plant J. 2007 Jul;51(1):32-46. Epub 2007 Jun 8.


Noel T. Keen--pioneer leader in molecular plant pathology.

Collmer A, Gold S.

Annu Rev Phytopathol. 2007;45:25-42.


Bioinformatics-enabled identification of the HrpL regulon and type III secretion system effector proteins of Pseudomonas syringae pv. phaseolicola 1448A.

Vencato M, Tian F, Alfano JR, Buell CR, Cartinhour S, DeClerck GA, Guttman DS, Stavrinides J, Joardar V, Lindeberg M, Bronstein PA, Mansfield JW, Myers CR, Collmer A, Schneider DJ.

Mol Plant Microbe Interact. 2006 Nov;19(11):1193-206.


Multiple approaches to a complete inventory of Pseudomonas syringae pv. tomato DC3000 type III secretion system effector proteins.

Schechter LM, Vencato M, Jordan KL, Schneider SE, Schneider DJ, Collmer A.

Mol Plant Microbe Interact. 2006 Nov;19(11):1180-92.


Whole-genome expression profiling defines the HrpL regulon of Pseudomonas syringae pv. tomato DC3000, allows de novo reconstruction of the Hrp cis clement, and identifies novel coregulated genes.

Ferreira AO, Myers CR, Gordon JS, Martin GB, Vencato M, Collmer A, Wehling MD, Alfano JR, Moreno-Hagelsieb G, Lamboy WF, DeClerck G, Schneider DJ, Cartinhour SW.

Mol Plant Microbe Interact. 2006 Nov;19(11):1167-79.


Closing the circle on the discovery of genes encoding Hrp regulon members and type III secretion system effectors in the genomes of three model Pseudomonas syringae strains.

Lindeberg M, Cartinhour S, Myers CR, Schechter LM, Schneider DJ, Collmer A.

Mol Plant Microbe Interact. 2006 Nov;19(11):1151-8. Review.


A Pseudomonas syringae pv. tomato avrE1/hopM1 mutant is severely reduced in growth and lesion formation in tomato.

Badel JL, Shimizu R, Oh HS, Collmer A.

Mol Plant Microbe Interact. 2006 Feb;19(2):99-111.


Whole-genome sequence analysis of Pseudomonas syringae pv. phaseolicola 1448A reveals divergence among pathovars in genes involved in virulence and transposition.

Joardar V, Lindeberg M, Jackson RW, Selengut J, Dodson R, Brinkac LM, Daugherty SC, Deboy R, Durkin AS, Giglio MG, Madupu R, Nelson WC, Rosovitz MJ, Sullivan S, Crabtree J, Creasy T, Davidsen T, Haft DH, Zafar N, Zhou L, Halpin R, Holley T, Khouri H, Feldblyum T, White O, Fraser CM, Chatterjee AK, Cartinhour S, Schneider DJ, Mansfield J, Collmer A, Buell CR.

J Bacteriol. 2005 Sep;187(18):6488-98.

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