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Accelerating the Calculation of Solute-Solvent Interaction Energies Through Systematic Molecular Fragmentation.

Collins MA, Ho J.

J Phys Chem A. 2019 Sep 11. doi: 10.1021/acs.jpca.9b06041. [Epub ahead of print]


PARP inhibition in vivo blocks alcohol-induced brain neurodegeneration and neuroinflammatory cytosolic phospholipase A2 elevations.

Kouzoukas DE, Schreiber JA, Tajuddin NF, Kaja S, Neafsey EJ, Kim HY, Collins MA.

Neurochem Int. 2019 Oct;129:104497. doi: 10.1016/j.neuint.2019.104497. Epub 2019 Jun 25.


Application of the Systematic Molecular Fragmentation by Annihilation Method to ab Initio NMR Chemical Shift Calculations.

Kobayashi R, Amos RD, Reid DM, Collins MA.

J Phys Chem A. 2018 Nov 21;122(46):9135-9141. doi: 10.1021/acs.jpca.8b09565. Epub 2018 Nov 13.


High-Resolution Imaging Methods to Analyze LINC Complex Function During Drosophila Muscle Development.

Auld AL, Collins MA, Mandigo TR, Folker ES.

Methods Mol Biol. 2018;1840:181-203. doi: 10.1007/978-1-4939-8691-0_14.


Chyle leak following an axillary sentinel lymph node biopsy for breast cancer in a patient with superior vena caval thrombosis - a case report and review of the literature.

Al-Ishaq Z, Gupta S, Collins MA, Sircar T.

Ann R Coll Surg Engl. 2018 Jul;100(6):e147-e149. doi: 10.1308/rcsann.2018.0074. Epub 2018 Apr 16. Review.


Combinatorial Preconditioning of Rat Brain Cultures with Subprotective Ethanol and Resveratrol Concentrations Promotes Synergistic Neuroprotection.

Khodaie N, Tajuddin N, Mitchell RM, Neafsey EJ, Collins MA.

Neurotox Res. 2018 Oct;34(3):749-756. doi: 10.1007/s12640-018-9886-2. Epub 2018 Mar 12.


Gemella bergeri infective endocarditis: a case report and brief review of literature.

Zaidi SJ, Husayni T, Collins MA.

Cardiol Young. 2018 May;28(5):762-764. doi: 10.1017/S1047951118000070. Epub 2018 Feb 15. Review.


PARP Inhibition Prevents Ethanol-Induced Neuroinflammatory Signaling and Neurodegeneration in Rat Adult-Age Brain Slice Cultures.

Tajuddin N, Kim HY, Collins MA.

J Pharmacol Exp Ther. 2018 Apr;365(1):117-126. doi: 10.1124/jpet.117.245290. Epub 2018 Jan 16.


Predicting ecological responses in a changing ocean: the effects of future climate uncertainty.

Freer JJ, Partridge JC, Tarling GA, Collins MA, Genner MJ.

Mar Biol. 2018;165(1):7. doi: 10.1007/s00227-017-3239-1. Epub 2017 Nov 9. Review.


Emery-Dreifuss muscular dystrophy-linked genes and centronuclear myopathy-linked genes regulate myonuclear movement by distinct mechanisms.

Collins MA, Mandigo TR, Camuglia JM, Vazquez GA, Anderson AJ, Hudson CH, Hanron JL, Folker ES.

Mol Biol Cell. 2017 Aug 15;28(17):2303-2317. doi: 10.1091/mbc.E16-10-0721. Epub 2017 Jun 21.


Microsolvation within the Systematic Molecular Fragmentation by Annihilation Approach.

Kobayashi R, Amos R, Collins MA.

J Phys Chem A. 2017 Jan 12;121(1):334-341. doi: 10.1021/acs.jpca.6b10919. Epub 2017 Jan 3.


The extent of fermentative transformation of phenolic compounds in the bioanode controls exoelectrogenic activity in a microbial electrolysis cell.

Zeng X, Collins MA, Borole AP, Pavlostathis SG.

Water Res. 2017 Feb 1;109:299-309. doi: 10.1016/j.watres.2016.11.057. Epub 2016 Nov 27.


Can Systematic Molecular Fragmentation Be Applied to Direct Ab Initio Molecular Dynamics?

Collins MA.

J Phys Chem A. 2016 Nov 23;120(46):9281-9291. Epub 2016 Nov 14.


Ethanol preconditioning of rat cerebellar cultures targets NMDA receptors to the synapse and enhances peroxiredoxin 2 expression.

Mitchell RM, Tajuddin N, Campbell EM, Neafsey EJ, Collins MA.

Brain Res. 2016 Jul 1;1642:163-169. doi: 10.1016/j.brainres.2016.03.011. Epub 2016 Mar 25.


Alcohol, Excitotoxicity and Adult Brain Damage: An Experimentally Unproven Chain-of-Events.

Collins MA, Neafsey EJ.

Front Mol Neurosci. 2016 Feb 10;9:8. doi: 10.3389/fnmol.2016.00008. eCollection 2016. No abstract available.


The nucleus is a conserved mechanosensation and mechanoresponse organelle.

Navarro AP, Collins MA, Folker ES.

Cytoskeleton (Hoboken). 2016 Feb;73(2):59-67. doi: 10.1002/cm.21277. Epub 2016 Feb 22. Review.


Prrx1 isoform switching regulates pancreatic cancer invasion and metastatic colonization.

Takano S, Reichert M, Bakir B, Das KK, Nishida T, Miyazaki M, Heeg S, Collins MA, Marchand B, Hicks PD, Maitra A, Rustgi AK.

Genes Dev. 2016 Jan 15;30(2):233-47. doi: 10.1101/gad.263327.115.


Characterization of Staphylococcus aureus Cas9: a smaller Cas9 for all-in-one adeno-associated virus delivery and paired nickase applications.

Friedland AE, Baral R, Singhal P, Loveluck K, Shen S, Sanchez M, Marco E, Gotta GM, Maeder ML, Kennedy EM, Kornepati AV, Sousa A, Collins MA, Jayaram H, Cullen BR, Bumcrot D.

Genome Biol. 2015 Nov 24;16:257. doi: 10.1186/s13059-015-0817-8.


Approximating CCSD(T) Nuclear Magnetic Shielding Calculations Using Composite Methods.

Reid DM, Collins MA.

J Chem Theory Comput. 2015 Nov 10;11(11):5177-81. doi: 10.1021/acs.jctc.5b00546. Epub 2015 Oct 6.


Label-Free LC-MS/MS Proteomic Analysis of Cerebrospinal Fluid Identifies Protein/Pathway Alterations and Candidate Biomarkers for Amyotrophic Lateral Sclerosis.

Collins MA, An J, Hood BL, Conrads TP, Bowser RP.

J Proteome Res. 2015 Nov 6;14(11):4486-501. doi: 10.1021/acs.jproteome.5b00804. Epub 2015 Oct 8.


Trophodynamics of Protomyctophum (Myctophidae) in the Scotia Sea (Southern Ocean).

Saunders RA, Collins MA, Ward P, Stowasser G, Shreeve R, Tarling GA.

J Fish Biol. 2015 Oct;87(4):1031-58. doi: 10.1111/jfb.12776. Epub 2015 Sep 16.


Ethnic identity, school connectedness, and achievement in standardized tests among Mexican-origin youth.

Santos CE, Collins MA.

Cultur Divers Ethnic Minor Psychol. 2016 Jul;22(3):447-52. doi: 10.1037/cdp0000065. Epub 2015 Aug 31.


H2 Adsorption in a Porous Crystal: Accurate First-Principles Quantum Simulation.

D'Arcy JH, Jordan MJ, Frankcombe TJ, Collins MA.

J Phys Chem A. 2015 Dec 17;119(50):12166-81. doi: 10.1021/acs.jpca.5b06074. Epub 2015 Sep 18.


Total protein is an effective loading control for cerebrospinal fluid western blots.

Collins MA, An J, Peller D, Bowser R.

J Neurosci Methods. 2015 Aug 15;251:72-82. doi: 10.1016/j.jneumeth.2015.05.011. Epub 2015 May 22.


Notch promotes recurrence of dormant tumor cells following HER2/neu-targeted therapy.

Abravanel DL, Belka GK, Pan TC, Pant DK, Collins MA, Sterner CJ, Chodosh LA.

J Clin Invest. 2015 Jun;125(6):2484-96. doi: 10.1172/JCI74883. Epub 2015 May 11.


Bmi1 is required for the initiation of pancreatic cancer through an Ink4a-independent mechanism.

Bednar F, Schofield HK, Collins MA, Yan W, Zhang Y, Shyam N, Eberle JA, Almada LL, Olive KP, Bardeesy N, Fernandez-Zapico ME, Nakada D, Simeone DM, Morrison SJ, Pasca di Magliano M.

Carcinogenesis. 2015 Jul;36(7):730-8. doi: 10.1093/carcin/bgv058. Epub 2015 May 4.


Energy-Based Molecular Fragmentation Methods.

Collins MA, Bettens RP.

Chem Rev. 2015 Jun 24;115(12):5607-42. doi: 10.1021/cr500455b. Epub 2015 Apr 6. No abstract available.


The impact of predation by marine mammals on patagonian toothfish longline fisheries.

Söffker M, Trathan P, Clark J, Collins MA, Belchier M, Scott R.

PLoS One. 2015 Mar 4;10(3):e0118113. doi: 10.1371/journal.pone.0118113. eCollection 2015.


Calculating nuclear magnetic resonance shieldings using systematic molecular fragmentation by annihilation.

Reid DM, Collins MA.

Phys Chem Chem Phys. 2015 Feb 21;17(7):5314-20. doi: 10.1039/c4cp05116e.


CD44 regulates pancreatic cancer invasion through MT1-MMP.

Jiang W, Zhang Y, Kane KT, Collins MA, Simeone DM, di Magliano MP, Nguyen KT.

Mol Cancer Res. 2015 Jan;13(1):9-15. doi: 10.1158/1541-7786.MCR-14-0076. Epub 2015 Jan 7.


The South Georgia and the South Sandwich Islands MPA: protecting a biodiverse oceanic island chain situated in the flow of the antarctic circumpolar current.

Trathan PN, Collins MA, Grant SM, Belchier M, Barnes DK, Brown J, Staniland IJ.

Adv Mar Biol. 2014;69:15-78. doi: 10.1016/B978-0-12-800214-8.00002-5.


Molecular forces, geometries, and frequencies by systematic molecular fragmentation including embedded charges.

Collins MA.

J Chem Phys. 2014 Sep 7;141(9):094108. doi: 10.1063/1.4894185.


The transcription factor GLI1 modulates the inflammatory response during pancreatic tissue remodeling.

Mathew E, Collins MA, Fernandez-Barrena MG, Holtz AM, Yan W, Hogan JO, Tata Z, Allen BL, Fernandez-Zapico ME, di Magliano MP.

J Biol Chem. 2014 Oct 3;289(40):27727-43. doi: 10.1074/jbc.M114.556563. Epub 2014 Aug 7.


Neuroinflammation and neurodegeneration in adult rat brain from binge ethanol exposure: abrogation by docosahexaenoic acid.

Tajuddin N, Moon KH, Marshall SA, Nixon K, Neafsey EJ, Kim HY, Collins MA.

PLoS One. 2014 Jul 16;9(7):e101223. doi: 10.1371/journal.pone.0101223. eCollection 2014.


The combined fragmentation and systematic molecular fragmentation methods.

Collins MA, Cvitkovic MW, Bettens RP.

Acc Chem Res. 2014 Sep 16;47(9):2776-85. doi: 10.1021/ar500088d. Epub 2014 Jun 27.


Post-fledging dispersal of king penguins (Aptenodytes patagonicus) from two breeding sites in the South Atlantic.

Pütz K, Trathan PN, Pedrana J, Collins MA, Poncet S, Lüthi B.

PLoS One. 2014 May 14;9(5):e97164. doi: 10.1371/journal.pone.0097164. eCollection 2014.


Application of best practice approaches for designing decision support tools: the preparatory education about clinical trials (PRE-ACT) study.

Fleisher L, Ruggieri DG, Miller SM, Manne S, Albrecht T, Buzaglo J, Collins MA, Katz M, Kinzy TG, Liu T, Manning C, Charap ES, Millard J, Miller DM, Poole D, Raivitch S, Roach N, Ross EA, Meropol NJ.

Patient Educ Couns. 2014 Jul;96(1):63-71. doi: 10.1016/j.pec.2014.04.009. Epub 2014 Apr 21.


CD4+ T lymphocyte ablation prevents pancreatic carcinogenesis in mice.

Zhang Y, Yan W, Mathew E, Bednar F, Wan S, Collins MA, Evans RA, Welling TH, Vonderheide RH, di Magliano MP.

Cancer Immunol Res. 2014 May;2(5):423-35. doi: 10.1158/2326-6066.CIR-14-0016-T. Epub 2014 Feb 11.


Alcohol, phospholipase A2-associated neuroinflammation, and ω3 docosahexaenoic acid protection.

Collins MA, Tajuddin N, Moon KH, Kim HY, Nixon K, Neafsey EJ.

Mol Neurobiol. 2014 Aug;50(1):239-45. doi: 10.1007/s12035-014-8690-0. Epub 2014 Apr 6. Review.


Does diisocyanate exposure result in neurotoxicity?

Hughes MA, Carson M, Collins MA, Jolly AT, Molenaar DM, Steffens W, Swaen GM.

Clin Toxicol (Phila). 2014 Apr;52(4):242-57. doi: 10.3109/15563650.2014.898769. Epub 2014 Mar 19. Review.


Kras as a key oncogene and therapeutic target in pancreatic cancer.

Collins MA, Pasca di Magliano M.

Front Physiol. 2014 Jan 21;4:407. doi: 10.3389/fphys.2013.00407. eCollection 2013. Review.


Systematic Study of Locally Dense Basis Sets for NMR Shielding Constants.

Reid DM, Kobayashi R, Collins MA.

J Chem Theory Comput. 2014 Jan 14;10(1):146-52. doi: 10.1021/ct4007579.


Molecular electrostatic potentials by systematic molecular fragmentation.

Reid DM, Collins MA.

J Chem Phys. 2013 Nov 14;139(18):184117. doi: 10.1063/1.4827020.


MAPK signaling is required for dedifferentiation of acinar cells and development of pancreatic intraepithelial neoplasia in mice.

Collins MA, Yan W, Sebolt-Leopold JS, Pasca di Magliano M.

Gastroenterology. 2014 Mar;146(3):822-834.e7. doi: 10.1053/j.gastro.2013.11.052. Epub 2013 Dec 6.


Education for foreign-trained dentists in the United States: currently available findings and need for further research.

Pannu V, Thompson AL, Pannu DS, Collins MA.

J Dent Educ. 2013 Nov;77(11):1521-4. Review.


Interleukin-6 is required for pancreatic cancer progression by promoting MAPK signaling activation and oxidative stress resistance.

Zhang Y, Yan W, Collins MA, Bednar F, Rakshit S, Zetter BR, Stanger BZ, Chung I, Rhim AD, di Magliano MP.

Cancer Res. 2013 Oct 15;73(20):6359-74. doi: 10.1158/0008-5472.CAN-13-1558-T. Epub 2013 Oct 4.


Sharing behavioral data through a grid infrastructure using data standards.

Min H, Ohira R, Collins MA, Bondy J, Avis NE, Tchuvatkina O, Courtney PK, Moser RP, Shaikh AR, Hesse BW, Cooper M, Reeves D, Lanese B, Helba C, Miller SM, Ross EA.

J Am Med Inform Assoc. 2014 Jul-Aug;21(4):642-9. doi: 10.1136/amiajnl-2013-001763. Epub 2013 Sep 27.


Phospholipase A2, oxidative stress, and neurodegeneration in binge ethanol-treated organotypic slice cultures of developing rat brain.

Moon KH, Tajuddin N, Brown J 3rd, Neafsey EJ, Kim HY, Collins MA.

Alcohol Clin Exp Res. 2014 Jan;38(1):161-9. doi: 10.1111/acer.12221. Epub 2013 Aug 1.


Putative agmatinase inhibitor for hypoxic-ischemic new born brain damage.

Piletz JE, Klenotich S, Lee KS, Zhu QL, Valente E, Collins MA, Jones V, Lee SN, Yangzheng F.

Neurotox Res. 2013 Aug;24(2):176-90. doi: 10.1007/s12640-013-9376-5. Epub 2013 Jan 19.


Metastatic pancreatic cancer is dependent on oncogenic Kras in mice.

Collins MA, Brisset JC, Zhang Y, Bednar F, Pierre J, Heist KA, Galbán CJ, Galbán S, di Magliano MP.

PLoS One. 2012;7(12):e49707. doi: 10.1371/journal.pone.0049707. Epub 2012 Dec 3.

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