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Items: 1 to 50 of 60

1.

Estrogen Regulates the Satellite Cell Compartment in Females.

Collins BC, Arpke RW, Larson AA, Baumann CW, Xie N, Cabelka CA, Nash NL, Juppi HK, Laakkonen EK, Sipilä S, Kovanen V, Spangenburg EE, Kyba M, Lowe DA.

Cell Rep. 2019 Jul 9;28(2):368-381.e6. doi: 10.1016/j.celrep.2019.06.025.

2.

Comparative analysis of mRNA and protein degradation in prostate tissues indicates high stability of proteins.

Shao W, Guo T, Toussaint NC, Xue P, Wagner U, Li L, Charmpi K, Zhu Y, Wu J, Buljan M, Sun R, Rutishauser D, Hermanns T, Fankhauser CD, Poyet C, Ljubicic J, Rupp N, Rüschoff JH, Zhong Q, Beyer A, Ji J, Collins BC, Liu Y, Rätsch G, Wild PJ, Aebersold R.

Nat Commun. 2019 Jun 7;10(1):2524. doi: 10.1038/s41467-019-10513-5.

3.

Aging of the musculoskeletal system: How the loss of estrogen impacts muscle strength.

Collins BC, Laakkonen EK, Lowe DA.

Bone. 2019 Jun;123:137-144. doi: 10.1016/j.bone.2019.03.033. Epub 2019 Mar 28.

PMID:
30930293
4.

Complex-centric proteome profiling by SEC-SWATH-MS.

Heusel M, Bludau I, Rosenberger G, Hafen R, Frank M, Banaei-Esfahani A, van Drogen A, Collins BC, Gstaiger M, Aebersold R.

Mol Syst Biol. 2019 Jan 14;15(1):e8438. doi: 10.15252/msb.20188438.

5.

Effects of ovarian hormones and estrogen receptor α on physical activity and skeletal muscle fatigue in female mice.

Cabelka CA, Baumann CW, Collins BC, Nash N, Le G, Lindsay A, Spangenburg EE, Lowe DA.

Exp Gerontol. 2019 Jan;115:155-164. doi: 10.1016/j.exger.2018.11.003. Epub 2018 Nov 8.

PMID:
30415069
6.

Proteomics goes parallel.

Collins BC, Aebersold R.

Nat Biotechnol. 2018 Nov 9;36(11):1051-1053. doi: 10.1038/nbt.4288. No abstract available.

PMID:
30412198
7.

Won't You Be My Neighbor? Muscle Stem Cells Recruit Endothelial Cells to Their Niche.

Collins BC, Kardon G.

Cell Stem Cell. 2018 Oct 4;23(4):455-456. doi: 10.1016/j.stem.2018.09.013.

8.

Data-independent acquisition-based SWATH-MS for quantitative proteomics: a tutorial.

Ludwig C, Gillet L, Rosenberger G, Amon S, Collins BC, Aebersold R.

Mol Syst Biol. 2018 Aug 13;14(8):e8126. doi: 10.15252/msb.20178126. Review.

9.

AP-SWATH Reveals Direct Involvement of VCP/p97 in Integrated Stress Response Signaling Through Facilitating CReP/PPP1R15B Degradation.

Hülsmann J, Kravic B, Weith M, Gstaiger M, Aebersold R, Collins BC, Meyer H.

Mol Cell Proteomics. 2018 Jul;17(7):1295-1307. doi: 10.1074/mcp.RA117.000471. Epub 2018 Mar 29.

10.

Deletion of estrogen receptor α in skeletal muscle results in impaired contractility in female mice.

Collins BC, Mader TL, Cabelka CA, Iñigo MR, Spangenburg EE, Lowe DA.

J Appl Physiol (1985). 2018 Apr 1;124(4):980-992. doi: 10.1152/japplphysiol.00864.2017. Epub 2018 Jan 18.

11.

Crystal structure of an anti-idiotype variable lymphocyte receptor.

Collins BC, Nakahara H, Acharya S, Cooper MD, Herrin BR, Wilson IA.

Acta Crystallogr F Struct Biol Commun. 2017 Dec 1;73(Pt 12):682-687. doi: 10.1107/S2053230X1701620X. Epub 2017 Nov 14.

12.

Systems proteomics approaches to study bacterial pathogens: application to Mycobacterium tuberculosis.

Banaei-Esfahani A, Nicod C, Aebersold R, Collins BC.

Curr Opin Microbiol. 2017 Oct;39:64-72. doi: 10.1016/j.mib.2017.09.013. Epub 2017 Oct 13. Review.

13.

Structural Insights into VLR Fine Specificity for Blood Group Carbohydrates.

Collins BC, Gunn RJ, McKitrick TR, Cummings RD, Cooper MD, Herrin BR, Wilson IA.

Structure. 2017 Nov 7;25(11):1667-1678.e4. doi: 10.1016/j.str.2017.09.003. Epub 2017 Oct 5.

14.

Multi-laboratory assessment of reproducibility, qualitative and quantitative performance of SWATH-mass spectrometry.

Collins BC, Hunter CL, Liu Y, Schilling B, Rosenberger G, Bader SL, Chan DW, Gibson BW, Gingras AC, Held JM, Hirayama-Kurogi M, Hou G, Krisp C, Larsen B, Lin L, Liu S, Molloy MP, Moritz RL, Ohtsuki S, Schlapbach R, Selevsek N, Thomas SN, Tzeng SC, Zhang H, Aebersold R.

Nat Commun. 2017 Aug 21;8(1):291. doi: 10.1038/s41467-017-00249-5.

15.

Statistical control of peptide and protein error rates in large-scale targeted data-independent acquisition analyses.

Rosenberger G, Bludau I, Schmitt U, Heusel M, Hunter CL, Liu Y, MacCoss MJ, MacLean BX, Nesvizhskii AI, Pedrioli PGA, Reiter L, Röst HL, Tate S, Ting YS, Collins BC, Aebersold R.

Nat Methods. 2017 Sep;14(9):921-927. doi: 10.1038/nmeth.4398. Epub 2017 Aug 21.

16.

Delayed effects of transcriptional responses in Mycobacterium tuberculosis exposed to nitric oxide suggest other mechanisms involved in survival.

Cortes T, Schubert OT, Banaei-Esfahani A, Collins BC, Aebersold R, Young DB.

Sci Rep. 2017 Aug 15;7(1):8208. doi: 10.1038/s41598-017-08306-1.

17.

Elucidation of host-pathogen protein-protein interactions to uncover mechanisms of host cell rewiring.

Nicod C, Banaei-Esfahani A, Collins BC.

Curr Opin Microbiol. 2017 Oct;39:7-15. doi: 10.1016/j.mib.2017.07.005. Epub 2017 Aug 11. Review.

18.

Absolute Quantification of Toxicological Biomarkers via Mass Spectrometry.

Lau TYK, Collins BC, Stone P, Tang N, Gallagher WM, Pennington SR.

Methods Mol Biol. 2017;1641:337-348. doi: 10.1007/978-1-4939-7172-5_19.

PMID:
28748474
19.

Integrating highly quantitative proteomics and genome-scale metabolic modeling to study pH adaptation in the human pathogen Enterococcus faecalis.

Großeholz R, Koh CC, Veith N, Fiedler T, Strauss M, Olivier B, Collins BC, Schubert OT, Bergmann F, Kreikemeyer B, Aebersold R, Kummer U.

NPJ Syst Biol Appl. 2016 Sep 8;2:16017. doi: 10.1038/npjsba.2016.17. eCollection 2016.

20.

Inference and quantification of peptidoforms in large sample cohorts by SWATH-MS.

Rosenberger G, Liu Y, Röst HL, Ludwig C, Buil A, Bensimon A, Soste M, Spector TD, Dermitzakis ET, Collins BC, Malmström L, Aebersold R.

Nat Biotechnol. 2017 Aug;35(8):781-788. doi: 10.1038/nbt.3908. Epub 2017 Jun 12.

21.

Quantitative proteomics: challenges and opportunities in basic and applied research.

Schubert OT, Röst HL, Collins BC, Rosenberger G, Aebersold R.

Nat Protoc. 2017 Jul;12(7):1289-1294. doi: 10.1038/nprot.2017.040. Epub 2017 Jun 1.

PMID:
28569762
22.

Precise Temporal Profiling of Signaling Complexes in Primary Cells Using SWATH Mass Spectrometry.

Caron E, Roncagalli R, Hase T, Wolski WE, Choi M, Menoita MG, Durand S, García-Blesa A, Fierro-Monti I, Sajic T, Heusel M, Weiss T, Malissen M, Schlapbach R, Collins BC, Ghosh S, Kitano H, Aebersold R, Malissen B, Gstaiger M.

Cell Rep. 2017 Mar 28;18(13):3219-3226. doi: 10.1016/j.celrep.2017.03.019.

23.

In Vivo and in Vitro Proteome Analysis of Human Immunodeficiency Virus (HIV)-1-infected, Human CD4+ T Cells.

Nemeth J, Vongrad V, Metzner KJ, Strouvelle VP, Weber R, Pedrioli P, Aebersold R, Günthard HF, Collins BC.

Mol Cell Proteomics. 2017 Apr;16(4 suppl 1):S108-S123. doi: 10.1074/mcp.M116.065235. Epub 2017 Feb 21.

24.

Applications and Developments in Targeted Proteomics: From SRM to DIA/SWATH.

Aebersold R, Bensimon A, Collins BC, Ludwig C, Sabido E.

Proteomics. 2016 Aug;16(15-16):2065-7. doi: 10.1002/pmic.201600203. No abstract available.

PMID:
27542680
25.

TRIC: an automated alignment strategy for reproducible protein quantification in targeted proteomics.

Röst HL, Liu Y, D'Agostino G, Zanella M, Navarro P, Rosenberger G, Collins BC, Gillet L, Testa G, Malmström L, Aebersold R.

Nat Methods. 2016 Sep;13(9):777-83. doi: 10.1038/nmeth.3954. Epub 2016 Aug 1.

26.

Estradiol modulates myosin regulatory light chain phosphorylation and contractility in skeletal muscle of female mice.

Lai S, Collins BC, Colson BA, Kararigas G, Lowe DA.

Am J Physiol Endocrinol Metab. 2016 May 1;310(9):E724-33. doi: 10.1152/ajpendo.00439.2015. Epub 2016 Mar 8.

27.

Identification of a Set of Conserved Eukaryotic Internal Retention Time Standards for Data-independent Acquisition Mass Spectrometry.

Parker SJ, Rost H, Rosenberger G, Collins BC, Malmström L, Amodei D, Venkatraman V, Raedschelders K, Van Eyk JE, Aebersold R.

Mol Cell Proteomics. 2015 Oct;14(10):2800-13. doi: 10.1074/mcp.O114.042267. Epub 2015 Jul 21.

28.

Assessment of a method to characterize antibody selectivity and specificity for use in immunoprecipitation.

Marcon E, Jain H, Bhattacharya A, Guo H, Phanse S, Pu S, Byram G, Collins BC, Dowdell E, Fenner M, Guo X, Hutchinson A, Kennedy JJ, Krastins B, Larsen B, Lin ZY, Lopez MF, Loppnau P, Miersch S, Nguyen T, Olsen JB, Paduch M, Ravichandran M, Seitova A, Vadali G, Vogelsang MS, Whiteaker JR, Zhong G, Zhong N, Zhao L, Aebersold R, Arrowsmith CH, Emili A, Frappier L, Gingras AC, Gstaiger M, Paulovich AG, Koide S, Kossiakoff AA, Sidhu SS, Wodak SJ, Gräslund S, Greenblatt JF, Edwards AM.

Nat Methods. 2015 Aug;12(8):725-31. doi: 10.1038/nmeth.3472. Epub 2015 Jun 29.

PMID:
26121405
29.

Absolute Proteome Composition and Dynamics during Dormancy and Resuscitation of Mycobacterium tuberculosis.

Schubert OT, Ludwig C, Kogadeeva M, Zimmermann M, Rosenberger G, Gengenbacher M, Gillet LC, Collins BC, Röst HL, Kaufmann SH, Sauer U, Aebersold R.

Cell Host Microbe. 2015 Jul 8;18(1):96-108. doi: 10.1016/j.chom.2015.06.001. Epub 2015 Jun 18.

30.

Rapid mass spectrometric conversion of tissue biopsy samples into permanent quantitative digital proteome maps.

Guo T, Kouvonen P, Koh CC, Gillet LC, Wolski WE, Röst HL, Rosenberger G, Collins BC, Blum LC, Gillessen S, Joerger M, Jochum W, Aebersold R.

Nat Med. 2015 Apr;21(4):407-13. doi: 10.1038/nm.3807. Epub 2015 Mar 2.

31.

Building high-quality assay libraries for targeted analysis of SWATH MS data.

Schubert OT, Gillet LC, Collins BC, Navarro P, Rosenberger G, Wolski WE, Lam H, Amodei D, Mallick P, MacLean B, Aebersold R.

Nat Protoc. 2015 Mar;10(3):426-41. doi: 10.1038/nprot.2015.015. Epub 2015 Feb 12.

PMID:
25675208
32.

Quantitative variability of 342 plasma proteins in a human twin population.

Liu Y, Buil A, Collins BC, Gillet LC, Blum LC, Cheng LY, Vitek O, Mouritsen J, Lachance G, Spector TD, Dermitzakis ET, Aebersold R.

Mol Syst Biol. 2015 Feb 4;11(1):786. doi: 10.15252/msb.20145728.

33.

The myosin super-relaxed state is disrupted by estradiol deficiency.

Colson BA, Petersen KJ, Collins BC, Lowe DA, Thomas DD.

Biochem Biophys Res Commun. 2015 Jan 2;456(1):151-5. doi: 10.1016/j.bbrc.2014.11.050. Epub 2014 Nov 21.

34.

OpenSWATH enables automated, targeted analysis of data-independent acquisition MS data.

Röst HL, Rosenberger G, Navarro P, Gillet L, Miladinović SM, Schubert OT, Wolski W, Collins BC, Malmström J, Malmström L, Aebersold R.

Nat Biotechnol. 2014 Mar;32(3):219-23. doi: 10.1038/nbt.2841. No abstract available.

PMID:
24727770
35.

A repository of assays to quantify 10,000 human proteins by SWATH-MS.

Rosenberger G, Koh CC, Guo T, Röst HL, Kouvonen P, Collins BC, Heusel M, Liu Y, Caron E, Vichalkovski A, Faini M, Schubert OT, Faridi P, Ebhardt HA, Matondo M, Lam H, Bader SL, Campbell DS, Deutsch EW, Moritz RL, Tate S, Aebersold R.

Sci Data. 2014 Sep 16;1:140031. doi: 10.1038/sdata.2014.31. eCollection 2014.

36.

Quantifying protein interaction dynamics by SWATH mass spectrometry: application to the 14-3-3 system.

Collins BC, Gillet LC, Rosenberger G, Röst HL, Vichalkovski A, Gstaiger M, Aebersold R.

Nat Methods. 2013 Dec;10(12):1246-53. doi: 10.1038/nmeth.2703. Epub 2013 Oct 27.

PMID:
24162925
37.

The homoeobox gene SIX1 alters myosin heavy chain isoform expression in mouse skeletal muscle.

Hetzler KL, Collins BC, Shanely RA, Sue H, Kostek MC.

Acta Physiol (Oxf). 2014 Feb;210(2):415-28. doi: 10.1111/apha.12168. Epub 2013 Nov 11.

PMID:
24102895
38.

Congregational participation and supports for children and adults with disabilities: parent perceptions.

Ault MJ, Collins BC, Carter EW.

Intellect Dev Disabil. 2013 Feb;51(1):48-61. doi: 10.1352/1934-9556-51.01.048.

PMID:
23360408
39.

Focus on cancer proteomics.

Collins BC, Gallagher WM.

Proteomics. 2012 Jul;12(13):2065-6. doi: 10.1002/pmic.201270084. No abstract available.

PMID:
22807453
40.

Development of a pharmaceutical hepatotoxicity biomarker panel using a discovery to targeted proteomics approach.

Collins BC, Miller CA, Sposny A, Hewitt P, Wells M, Gallagher WM, Pennington SR.

Mol Cell Proteomics. 2012 Aug;11(8):394-410. doi: 10.1074/mcp.M111.016493. Epub 2012 Apr 23.

41.

Serum proteomic profiling reveals that pretreatment complement protein levels are predictive of esophageal cancer patient response to neoadjuvant chemoradiation.

Maher SG, McDowell DT, Collins BC, Muldoon C, Gallagher WM, Reynolds JV.

Ann Surg. 2011 Nov;254(5):809-16; discussion 816-7. doi: 10.1097/SLA.0b013e31823699f2.

PMID:
22005152
42.

Public response to an anthrax attack: reactions to mass prophylaxis in a scenario involving inhalation anthrax from an unidentified source.

SteelFisher G, Blendon R, Ross LJ, Collins BC, Ben-Porath EN, Bekheit MM, Mailhot JR.

Biosecur Bioterror. 2011 Sep;9(3):239-50. doi: 10.1089/bsp.2011.0005. Epub 2011 Aug 5.

PMID:
21819225
43.

Sequence tagging reveals unexpected modifications in toxicoproteomics.

Dasari S, Chambers MC, Codreanu SG, Liebler DC, Collins BC, Pennington SR, Gallagher WM, Tabb DL.

Chem Res Toxicol. 2011 Feb 18;24(2):204-16. doi: 10.1021/tx100275t. Epub 2011 Jan 7.

44.

Absolute quantification of toxicological biomarkers by multiple reaction monitoring.

Lau TY, Collins BC, Stone P, Tang N, Gallagher WM, Pennington SR.

Methods Mol Biol. 2011;691:417-27. doi: 10.1007/978-1-60761-849-2_25.

PMID:
20972768
45.

Differential proteomics incorporating iTRAQ labeling and multi-dimensional separations.

Collins BC, Lau TY, Pennington SR, Gallagher WM.

Methods Mol Biol. 2011;691:369-83. doi: 10.1007/978-1-60761-849-2_23.

PMID:
20972766
46.

The lowdown on laptops: How to get a rugged computer that fits your needs.

Collins BC.

JEMS. 2010 Jul;35(7):60-1. doi: 10.1016/S0197-2510(10)70176-5. No abstract available.

PMID:
20643289
47.

Use of SELDI MS to discover and identify potential biomarkers of toxicity in InnoMed PredTox: a multi-site, multi-compound study.

Collins BC, Sposny A, McCarthy D, Brandenburg A, Woodbury R, Pennington SR, Gautier JC, Hewitt P, Gallagher WM.

Proteomics. 2010 Apr;10(8):1592-608. doi: 10.1002/pmic.200900608.

PMID:
20162557
48.

Cancer proteomics--an evolving battlefield. Conference on Cancer Proteomics 2009: Mechanistic Insights, Technological Advances & Molecular Medicine.

Collins BC, Lau TY, O'Connor DP, Hondermarck H.

EMBO Rep. 2009 Nov;10(11):1202-5. doi: 10.1038/embor.2009.222. Epub 2009 Oct 2. No abstract available.

49.

Use of proteomics for the discovery of early markers of drug toxicity.

Collins BC, Clarke A, Kitteringham NR, Gallagher WM, Pennington SR.

Expert Opin Drug Metab Toxicol. 2007 Oct;3(5):689-704. Review.

PMID:
17916055
50.

Improving physician performance through Internet-based interventions: who will participate?

Wall TC, Mian MA, Ray MN, Casebeer L, Collins BC, Kiefe CI, Weissman N, Allison JJ.

J Med Internet Res. 2005 Sep 2;7(4):e48.

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