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Items: 39

1.

Influence of the microbiota-gut-brain axis on behavior and welfare in farm animals: A review.

Kraimi N, Dawkins M, Gebhardt-Henrich SG, Velge P, Rychlik I, Volf J, Creach P, Smith A, Colles F, Leterrier C.

Physiol Behav. 2019 Oct 15;210:112658. doi: 10.1016/j.physbeh.2019.112658. Epub 2019 Aug 17. Review.

PMID:
31430443
2.

Domestication of Campylobacter jejuni NCTC 11168.

Pascoe B, Williams LK, Calland JK, Meric G, Hitchings MD, Dyer M, Ryder J, Shaw S, Lopes BS, Chintoan-Uta C, Allan E, Vidal A, Fearnley C, Everest P, Pachebat JA, Cogan TA, Stevens MP, Humphrey TJ, Wilkinson TS, Cody AJ, Colles FM, Jolley KA, Maiden MCJ, Strachan N, Pearson BM, Linton D, Wren BW, Parkhill J, Kelly DJ, van Vliet AHM, Forbes KJ, Sheppard SK.

Microb Genom. 2019 Jul;5(7). doi: 10.1099/mgen.0.000279. Epub 2019 Jul 16.

3.

Parallel sequencing of porA reveals a complex pattern of Campylobacter genotypes that differs between broiler and broiler breeder chickens.

Colles FM, Preston SG, Barfod KK, Flammer PG, Maiden MCJ, Smith AL.

Sci Rep. 2019 Apr 17;9(1):6204. doi: 10.1038/s41598-019-42207-9.

4.

Genome-wide association of functional traits linked with Campylobacter jejuni survival from farm to fork.

Yahara K, Méric G, Taylor AJ, de Vries SP, Murray S, Pascoe B, Mageiros L, Torralbo A, Vidal A, Ridley A, Komukai S, Wimalarathna H, Cody AJ, Colles FM, McCarthy N, Harris D, Bray JE, Jolley KA, Maiden MC, Bentley SD, Parkhill J, Bayliss CD, Grant A, Maskell D, Didelot X, Kelly DJ, Sheppard SK.

Environ Microbiol. 2017 Jan;19(1):361-380. doi: 10.1111/1462-2920.13628.

5.

Genetic Diversity of Campylobacter jejuni and Campylobacter coli Isolates from Conventional Broiler Flocks and the Impacts of Sampling Strategy and Laboratory Method.

Vidal AB, Colles FM, Rodgers JD, McCarthy ND, Davies RH, Maiden MCJ, Clifton-Hadley FA.

Appl Environ Microbiol. 2016 Apr 4;82(8):2347-2355. doi: 10.1128/AEM.03693-15. Print 2016 Apr.

6.

Monitoring chicken flock behaviour provides early warning of infection by human pathogen Campylobacter.

Colles FM, Cain RJ, Nickson T, Smith AL, Roberts SJ, Maiden MC, Lunn D, Dawkins MS.

Proc Biol Sci. 2016 Jan 13;283(1822). pii: 20152323. doi: 10.1098/rspb.2015.2323.

7.

Wild bird-associated Campylobacter jejuni isolates are a consistent source of human disease, in Oxfordshire, United Kingdom.

Cody AJ, McCarthy ND, Bray JE, Wimalarathna HM, Colles FM, Jansen van Rensburg MJ, Dingle KE, Waldenström J, Maiden MC.

Environ Microbiol Rep. 2015 Oct;7(5):782-8. doi: 10.1111/1758-2229.12314. Epub 2015 Sep 8.

8.

The long-term dynamics of Campylobacter colonizing a free-range broiler breeder flock: an observational study.

Colles FM, McCarthy ND, Bliss CM, Layton R, Maiden MC.

Environ Microbiol. 2015 Apr;17(4):938-46. doi: 10.1111/1462-2920.12415. Epub 2014 Mar 11.

9.

Cryptic ecology among host generalist Campylobacter jejuni in domestic animals.

Sheppard SK, Cheng L, Méric G, de Haan CP, Llarena AK, Marttinen P, Vidal A, Ridley A, Clifton-Hadley F, Connor TR, Strachan NJ, Forbes K, Colles FM, Jolley KA, Bentley SD, Maiden MC, Hänninen ML, Parkhill J, Hanage WP, Corander J.

Mol Ecol. 2014 May;23(10):2442-51. doi: 10.1111/mec.12742. Epub 2014 Apr 25.

10.

Marked host specificity and lack of phylogeographic population structure of Campylobacter jejuni in wild birds.

Griekspoor P, Colles FM, McCarthy ND, Hansbro PM, Ashhurst-Smith C, Olsen B, Hasselquist D, Maiden MC, Waldenström J.

Mol Ecol. 2013 Mar;22(5):1463-72. doi: 10.1111/mec.12144. Epub 2013 Jan 29.

11.

Progressive genome-wide introgression in agricultural Campylobacter coli.

Sheppard SK, Didelot X, Jolley KA, Darling AE, Pascoe B, Meric G, Kelly DJ, Cody A, Colles FM, Strachan NJ, Ogden ID, Forbes K, French NP, Carter P, Miller WG, McCarthy ND, Owen R, Litrup E, Egholm M, Affourtit JP, Bentley SD, Parkhill J, Maiden MC, Falush D.

Mol Ecol. 2013 Feb;22(4):1051-64. doi: 10.1111/mec.12162. Epub 2012 Dec 20.

12.

Evidence for phenotypic plasticity among multihost Campylobacter jejuni and C. coli lineages, obtained using ribosomal multilocus sequence typing and Raman spectroscopy.

Read DS, Woodcock DJ, Strachan NJ, Forbes KJ, Colles FM, Maiden MC, Clifton-Hadley F, Ridley A, Vidal A, Rodgers J, Whiteley AS, Sheppard SK.

Appl Environ Microbiol. 2013 Feb;79(3):965-73. doi: 10.1128/AEM.02521-12. Epub 2012 Nov 30.

13.

Campylobacter sequence typing databases: applications and future prospects.

Colles FM, Maiden MC.

Microbiology. 2012 Nov;158(Pt 11):2695-709. doi: 10.1099/mic.0.062000-0. Epub 2012 Sep 17. Review.

PMID:
22986295
14.

A longitudinal 6-year study of the molecular epidemiology of clinical campylobacter isolates in Oxfordshire, United kingdom.

Cody AJ, McCarthy NM, Wimalarathna HL, Colles FM, Clark L, Bowler IC, Maiden MC, Dingle KE.

J Clin Microbiol. 2012 Oct;50(10):3193-201. doi: 10.1128/JCM.01086-12. Epub 2012 Jul 18.

15.

Ribosomal multilocus sequence typing: universal characterization of bacteria from domain to strain.

Jolley KA, Bliss CM, Bennett JS, Bratcher HB, Brehony C, Colles FM, Wimalarathna H, Harrison OB, Sheppard SK, Cody AJ, Maiden MC.

Microbiology. 2012 Apr;158(Pt 4):1005-15. doi: 10.1099/mic.0.055459-0. Epub 2012 Jan 27.

16.

The prevalence of Campylobacter amongst a free-range broiler breeder flock was primarily affected by flock age.

Colles FM, McCarthy ND, Layton R, Maiden MC.

PLoS One. 2011;6(12):e22825. doi: 10.1371/journal.pone.0022825. Epub 2011 Dec 12.

17.

Campylobacter populations in wild and domesticated Mallard ducks (Anas platyrhynchos).

Colles FM, Ali JS, Sheppard SK, McCarthy ND, Maiden MC.

Environ Microbiol Rep. 2011 Oct;3(5):574-580.

18.

Temporal variation and host association in the Campylobacter population in a longitudinal ruminant farm study.

Sproston EL, Ogden ID, MacRae M, Dallas JF, Sheppard SK, Cody AJ, Colles FM, Wilson MJ, Forbes KJ, Strachan NJ.

Appl Environ Microbiol. 2011 Sep;77(18):6579-86. doi: 10.1128/AEM.00428-11. Epub 2011 Jul 22.

19.

Niche segregation and genetic structure of Campylobacter jejuni populations from wild and agricultural host species.

Sheppard SK, Colles FM, McCarthy ND, Strachan NJ, Ogden ID, Forbes KJ, Dallas JF, Maiden MC.

Mol Ecol. 2011 Aug;20(16):3484-90. doi: 10.1111/j.1365-294X.2011.05179.x. Epub 2011 Jul 18.

20.

Evolution of an agriculture-associated disease causing Campylobacter coli clade: evidence from national surveillance data in Scotland.

Sheppard SK, Dallas JF, Wilson DJ, Strachan NJ, McCarthy ND, Jolley KA, Colles FM, Rotariu O, Ogden ID, Forbes KJ, Maiden MC.

PLoS One. 2010 Dec 15;5(12):e15708. doi: 10.1371/journal.pone.0015708.

21.

Campylobacter genotypes from poultry transportation crates indicate a source of contamination and transmission.

Hastings R, Colles FM, McCarthy ND, Maiden MC, Sheppard SK.

J Appl Microbiol. 2011 Jan;110(1):266-76. doi: 10.1111/j.1365-2672.2010.04883.x. Epub 2010 Nov 9.

22.

Host association of Campylobacter genotypes transcends geographic variation.

Sheppard SK, Colles F, Richardson J, Cody AJ, Elson R, Lawson A, Brick G, Meldrum R, Little CL, Owen RJ, Maiden MC, McCarthy ND.

Appl Environ Microbiol. 2010 Aug;76(15):5269-77. doi: 10.1128/AEM.00124-10. Epub 2010 Jun 4.

23.

Multi-locus sequence types of Campylobacter carried by flies and slugs acquired from local ruminant faeces.

Sproston EL, Ogden ID, MacRae M, Forbes KJ, Dallas JF, Sheppard SK, Cody A, Colles F, Wilson MJ, Strachan NJ.

J Appl Microbiol. 2010 Sep;109(3):829-38. doi: 10.1111/j.1365-2672.2010.04711.x.

24.

Where does Campylobacter come from? A molecular odyssey.

Cody AJ, Colles FM, Sheppard SK, Maiden MC.

Adv Exp Med Biol. 2010;659:47-56. doi: 10.1007/978-1-4419-0981-7_4. Review. No abstract available.

25.

Comparison of Campylobacter populations isolated from a free-range broiler flock before and after slaughter.

Colles FM, McCarthy ND, Sheppard SK, Layton R, Maiden MC.

Int J Food Microbiol. 2010 Feb 28;137(2-3):259-64. doi: 10.1016/j.ijfoodmicro.2009.12.021. Epub 2010 Jan 4.

26.

Molecular epidemiology of Campylobacter jejuni isolates from wild-bird fecal material in children's playgrounds.

French NP, Midwinter A, Holland B, Collins-Emerson J, Pattison R, Colles F, Carter P.

Appl Environ Microbiol. 2009 Feb;75(3):779-83. doi: 10.1128/AEM.01979-08. Epub 2008 Dec 1.

27.

Dynamics of Campylobacter colonization of a natural host, Sturnus vulgaris (European starling).

Colles FM, McCarthy ND, Howe JC, Devereux CL, Gosler AG, Maiden MC.

Environ Microbiol. 2009 Jan;11(1):258-67. doi: 10.1111/j.1462-2920.2008.01773.x. Epub 2008 Sep 29.

28.

Campylobacter infection of broiler chickens in a free-range environment.

Colles FM, Jones TA, McCarthy ND, Sheppard SK, Cody AJ, Dingle KE, Dawkins MS, Maiden MC.

Environ Microbiol. 2008 Aug;10(8):2042-50. doi: 10.1111/j.1462-2920.2008.01623.x. Epub 2008 Apr 10.

29.

Comparison of Campylobacter populations in wild geese with those in starlings and free-range poultry on the same farm.

Colles FM, Dingle KE, Cody AJ, Maiden MC.

Appl Environ Microbiol. 2008 Jun;74(11):3583-90. doi: 10.1128/AEM.02491-07. Epub 2008 Apr 4.

30.

Host-associated genetic import in Campylobacter jejuni.

McCarthy ND, Colles FM, Dingle KE, Bagnall MC, Manning G, Maiden MC, Falush D.

Emerg Infect Dis. 2007 Feb;13(2):267-72.

31.

Sex and virulence in Escherichia coli: an evolutionary perspective.

Wirth T, Falush D, Lan R, Colles F, Mensa P, Wieler LH, Karch H, Reeves PR, Maiden MC, Ochman H, Achtman M.

Mol Microbiol. 2006 Jun;60(5):1136-51.

32.

Sequence typing and comparison of population biology of Campylobacter coli and Campylobacter jejuni.

Dingle KE, Colles FM, Falush D, Maiden MC.

J Clin Microbiol. 2005 Jan;43(1):340-7.

33.

Molecular evidence for dissemination of unique Campylobacter jejuni clones in Curaçao, Netherlands Antilles.

Duim B, Godschalk PC, van den Braak N, Dingle KE, Dijkstra JR, Leyde E, van der Plas J, Colles FM, Endtz HP, Wagenaar JA, Maiden MC, van Belkum A.

J Clin Microbiol. 2003 Dec;41(12):5593-7.

34.

Genetic diversity of Campylobacter jejuni isolates from farm animals and the farm environment.

Colles FM, Jones K, Harding RM, Maiden MC.

Appl Environ Microbiol. 2003 Dec;69(12):7409-13.

35.

Reference isolates for the clonal complexes of Campylobacter jejuni.

Wareing DR, Ure R, Colles FM, Bolton FJ, Fox AJ, Maiden MC, Dingle KE.

Lett Appl Microbiol. 2003;36(2):106-10.

36.
37.

Molecular characterization of Campylobacter jejuni clones: a basis for epidemiologic investigation.

Dingle KE, Colles FM, Ure R, Wagenaar JA, Duim B, Bolton FJ, Fox AJ, Wareing DR, Maiden MC.

Emerg Infect Dis. 2002 Sep;8(9):949-55.

38.

Sequence typing confirms that Campylobacter jejuni strains associated with Guillain-Barré and Miller-Fisher syndromes are of diverse genetic lineage, serotype, and flagella type.

Dingle KE, Van Den Braak N, Colles FM, Price LJ, Woodward DL, Rodgers FG, Endtz HP, Van Belkum A, Maiden MC.

J Clin Microbiol. 2001 Sep;39(9):3346-9.

39.

Multilocus sequence typing system for Campylobacter jejuni.

Dingle KE, Colles FM, Wareing DR, Ure R, Fox AJ, Bolton FE, Bootsma HJ, Willems RJ, Urwin R, Maiden MC.

J Clin Microbiol. 2001 Jan;39(1):14-23.

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