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Items: 35

1.

Evolutionary Histories of Type III Polyketide Synthases in Fungi.

Navarro-Muñoz JC, Collemare J.

Front Microbiol. 2020 Jan 21;10:3018. doi: 10.3389/fmicb.2019.03018. eCollection 2019.

2.

The High-Quality Complete Genome Sequence of the Opportunistic Fungal Pathogen Candida vulturna CBS 14366T.

Navarro-Muñoz JC, de Jong AW, Gerrits van den Ende B, Haas PJ, Then ER, Mohd Tap R, Collemare J, Hagen F.

Mycopathologia. 2019 Dec;184(6):731-734. doi: 10.1007/s11046-019-00404-0. Epub 2019 Nov 16.

PMID:
31734799
3.

MIBiG 2.0: a repository for biosynthetic gene clusters of known function.

Kautsar SA, Blin K, Shaw S, Navarro-Muñoz JC, Terlouw BR, van der Hooft JJJ, van Santen JA, Tracanna V, Suarez Duran HG, Pascal Andreu V, Selem-Mojica N, Alanjary M, Robinson SL, Lund G, Epstein SC, Sisto AC, Charkoudian LK, Collemare J, Linington RG, Weber T, Medema MH.

Nucleic Acids Res. 2020 Jan 8;48(D1):D454-D458. doi: 10.1093/nar/gkz882.

PMID:
31612915
4.

Chromatin-dependent regulation of secondary metabolite biosynthesis in fungi: is the picture complete?

Collemare J, Seidl MF.

FEMS Microbiol Rev. 2019 Nov 1;43(6):591-607. doi: 10.1093/femsre/fuz018.

PMID:
31301226
5.

Population Genome Sequencing of the Scab Fungal Species Venturia inaequalis, Venturia pirina, Venturia aucupariae and Venturia asperata.

Le Cam B, Sargent D, Gouzy J, Amselem J, Bellanger MN, Bouchez O, Brown S, Caffier V, De Gracia M, Debuchy R, Duvaux L, Payen T, Sannier M, Shiller J, Collemare J, Lemaire C.

G3 (Bethesda). 2019 Aug 8;9(8):2405-2414. doi: 10.1534/g3.119.400047.

6.

Draft Genome Sequence of the Wood-Staining Ascomycete Chlorociboria aeruginascens DSM 107184.

Büttner E, Liers C, Gebauer AM, Collemare J, Navarro-Muñoz JC, Hofrichter M, Kellner H.

Microbiol Resour Announc. 2019 Apr 25;8(17). pii: e00249-19. doi: 10.1128/MRA.00249-19.

7.

Nonproteinaceous effectors: the terra incognita of plant-fungal interactions.

Collemare J, O'Connell R, Lebrun MH.

New Phytol. 2019 Jul;223(2):590-596. doi: 10.1111/nph.15785. Epub 2019 Apr 3. Review.

PMID:
30851201
8.

Assignment of a dubious gene cluster to melanin biosynthesis in the tomato fungal pathogen Cladosporium fulvum.

Griffiths SA, Cox RJ, Overdijk EJR, Mesarich CH, Saccomanno B, Lazarus CM, de Wit PJGM, Collemare J.

PLoS One. 2018 Dec 31;13(12):e0209600. doi: 10.1371/journal.pone.0209600. eCollection 2018.

9.

Specific Hypersensitive Response-Associated Recognition of New Apoplastic Effectors from Cladosporium fulvum in Wild Tomato.

Mesarich CH, Ӧkmen B, Rovenich H, Griffiths SA, Wang C, Karimi Jashni M, Mihajlovski A, Collemare J, Hunziker L, Deng CH, van der Burgt A, Beenen HG, Templeton MD, Bradshaw RE, de Wit PJGM.

Mol Plant Microbe Interact. 2018 Jan;31(1):145-162. doi: 10.1094/MPMI-05-17-0114-FI. Epub 2017 Nov 16.

PMID:
29144204
10.

Down-regulation of cladofulvin biosynthesis is required for biotrophic growth of Cladosporium fulvum on tomato.

Griffiths S, Mesarich CH, Overdijk EJR, Saccomanno B, de Wit PJGM, Collemare J.

Mol Plant Pathol. 2018 Feb;19(2):369-380. doi: 10.1111/mpp.12527. Epub 2017 Feb 6.

11.

Elucidation of cladofulvin biosynthesis reveals a cytochrome P450 monooxygenase required for anthraquinone dimerization.

Griffiths S, Mesarich CH, Saccomanno B, Vaisberg A, De Wit PJ, Cox R, Collemare J.

Proc Natl Acad Sci U S A. 2016 Jun 21;113(25):6851-6. doi: 10.1073/pnas.1603528113. Epub 2016 Jun 6.

12.

Correction: The Genomes of the Fungal Plant Pathogens Cladosporium fulvum and Dothistroma septosporum Reveal Adaptation to Different Hosts and Lifestyles But Also Signatures of Common Ancestry.

de Wit PJ, van der Burgt A, Ökmen B, Stergiopoulos I, Abd-Elsalam KA, Aerts AL, Bahkali AH, Beenen HG, Chettri P, Cox MP, Datema E, de Vries RP, Dhillon B, Ganley AR, Griffiths SA, Guo Y, Hamelin RC, Henrissat B, Kabir MS, Jashni MK, Kema G, Klaubauf S, Lapidus A, Levasseur A, Lindquist E, Mehrabi R, Ohm RA, Owen TJ, Salamov A, Schwelm A, Schijlen E, Sun H, van den Burg HA, van Ham RC, Zhang S, Goodwin SB, Grigoriev IV, Collemare J, Bradshaw RE.

PLoS Genet. 2015 Dec 22;11(12):e1005775. doi: 10.1371/journal.pgen.1005775. eCollection 2015 Dec. No abstract available.

13.

Regulation of secondary metabolite production in the fungal tomato pathogen Cladosporium fulvum.

Griffiths S, Saccomanno B, de Wit PJ, Collemare J.

Fungal Genet Biol. 2015 Nov;84:52-61. doi: 10.1016/j.fgb.2015.09.009. Epub 2015 Sep 28.

PMID:
26415644
14.

The battle in the apoplast: further insights into the roles of proteases and their inhibitors in plant-pathogen interactions.

Jashni MK, Mehrabi R, Collemare J, Mesarich CH, de Wit PJ.

Front Plant Sci. 2015 Aug 3;6:584. doi: 10.3389/fpls.2015.00584. eCollection 2015. Review.

15.

Heterologous expression of the avirulence gene ACE1 from the fungal rice pathogen Magnaporthe oryzae.

Song Z, Bakeer W, Marshall JW, Yakasai AA, Khalid RM, Collemare J, Skellam E, Tharreau D, Lebrun MH, Lazarus CM, Bailey AM, Simpson TJ, Cox RJ.

Chem Sci. 2015 Aug 1;6(8):4837-4845. doi: 10.1039/c4sc03707c. Epub 2015 Jun 1.

16.

Novel Introner-Like Elements in fungi Are Involved in Parallel Gains of Spliceosomal Introns.

Collemare J, Beenen HG, Crous PW, de Wit PJ, van der Burgt A.

PLoS One. 2015 Jun 5;10(6):e0129302. doi: 10.1371/journal.pone.0129302. eCollection 2015.

17.

Synergistic Action of a Metalloprotease and a Serine Protease from Fusarium oxysporum f. sp. lycopersici Cleaves Chitin-Binding Tomato Chitinases, Reduces Their Antifungal Activity, and Enhances Fungal Virulence.

Jashni MK, Dols IH, Iida Y, Boeren S, Beenen HG, Mehrabi R, Collemare J, de Wit PJ.

Mol Plant Microbe Interact. 2015 Sep;28(9):996-1008. doi: 10.1094/MPMI-04-15-0074-R. Epub 2015 Aug 10.

18.

Novel Mutations Detected in Avirulence Genes Overcoming Tomato Cf Resistance Genes in Isolates of a Japanese Population of Cladosporium fulvum.

Iida Y, van 't Hof P, Beenen H, Mesarich C, Kubota M, Stergiopoulos I, Mehrabi R, Notsu A, Fujiwara K, Bahkali A, Abd-Elsalam K, Collemare J, de Wit PJ.

PLoS One. 2015 Apr 22;10(4):e0123271. doi: 10.1371/journal.pone.0123271. eCollection 2015.

19.

Functional analysis of the conserved transcriptional regulator CfWor1 in Cladosporium fulvum reveals diverse roles in the virulence of plant pathogenic fungi.

Okmen B, Collemare J, Griffiths S, van der Burgt A, Cox R, de Wit PJ.

Mol Microbiol. 2014 Apr;92(1):10-27. doi: 10.1111/mmi.12535. Epub 2014 Feb 27.

20.

Secondary metabolism and biotrophic lifestyle in the tomato pathogen Cladosporium fulvum.

Collemare J, Griffiths S, Iida Y, Karimi Jashni M, Battaglia E, Cox RJ, de Wit PJ.

PLoS One. 2014 Jan 17;9(1):e85877. doi: 10.1371/journal.pone.0085877. eCollection 2014.

21.

Automated alignment-based curation of gene models in filamentous fungi.

van der Burgt A, Severing E, Collemare J, de Wit PJ.

BMC Bioinformatics. 2014 Jan 16;15:19. doi: 10.1186/1471-2105-15-19.

22.

At the origin of spliceosomal introns: Is multiplication of introner-like elements the main mechanism of intron gain in fungi?

Collemare J, van der Burgt A, de Wit PJ.

Commun Integr Biol. 2013 Mar 1;6(2):e23147. doi: 10.4161/cib.23147.

23.

Detoxification of α-tomatine by Cladosporium fulvum is required for full virulence on tomato.

Ökmen B, Etalo DW, Joosten MH, Bouwmeester HJ, de Vos RC, Collemare J, de Wit PJ.

New Phytol. 2013 Jun;198(4):1203-14. doi: 10.1111/nph.12208. Epub 2013 Mar 1.

24.

The genomes of the fungal plant pathogens Cladosporium fulvum and Dothistroma septosporum reveal adaptation to different hosts and lifestyles but also signatures of common ancestry.

de Wit PJ, van der Burgt A, Ökmen B, Stergiopoulos I, Abd-Elsalam KA, Aerts AL, Bahkali AH, Beenen HG, Chettri P, Cox MP, Datema E, de Vries RP, Dhillon B, Ganley AR, Griffiths SA, Guo Y, Hamelin RC, Henrissat B, Kabir MS, Jashni MK, Kema G, Klaubauf S, Lapidus A, Levasseur A, Lindquist E, Mehrabi R, Ohm RA, Owen TJ, Salamov A, Schwelm A, Schijlen E, Sun H, van den Burg HA, van Ham RC, Zhang S, Goodwin SB, Grigoriev IV, Collemare J, Bradshaw RE.

PLoS Genet. 2012;8(11):e1003088. doi: 10.1371/journal.pgen.1003088. Epub 2012 Nov 29. Erratum in: PLoS Genet. 2015 Dec;11(12):e1005775.

25.

Dothistromin genes at multiple separate loci are regulated by AflR.

Chettri P, Ehrlich KC, Cary JW, Collemare J, Cox MP, Griffiths SA, Olson MA, de Wit PJ, Bradshaw RE.

Fungal Genet Biol. 2013 Feb;51:12-20. doi: 10.1016/j.fgb.2012.11.006. Epub 2012 Dec 1.

PMID:
23207690
26.

Phytotoxic secondary metabolites and peptides produced by plant pathogenic Dothideomycete fungi.

Stergiopoulos I, Collemare J, Mehrabi R, De Wit PJ.

FEMS Microbiol Rev. 2013 Jan;37(1):67-93. doi: 10.1111/j.1574-6976.2012.00349.x. Epub 2012 Aug 29. Review.

27.

Birth of new spliceosomal introns in fungi by multiplication of introner-like elements.

van der Burgt A, Severing E, de Wit PJ, Collemare J.

Curr Biol. 2012 Jul 10;22(13):1260-5. doi: 10.1016/j.cub.2012.05.011. Epub 2012 May 31.

28.

Genomic analysis of the necrotrophic fungal pathogens Sclerotinia sclerotiorum and Botrytis cinerea.

Amselem J, Cuomo CA, van Kan JA, Viaud M, Benito EP, Couloux A, Coutinho PM, de Vries RP, Dyer PS, Fillinger S, Fournier E, Gout L, Hahn M, Kohn L, Lapalu N, Plummer KM, Pradier JM, Quévillon E, Sharon A, Simon A, ten Have A, Tudzynski B, Tudzynski P, Wincker P, Andrew M, Anthouard V, Beever RE, Beffa R, Benoit I, Bouzid O, Brault B, Chen Z, Choquer M, Collémare J, Cotton P, Danchin EG, Da Silva C, Gautier A, Giraud C, Giraud T, Gonzalez C, Grossetete S, Güldener U, Henrissat B, Howlett BJ, Kodira C, Kretschmer M, Lappartient A, Leroch M, Levis C, Mauceli E, Neuvéglise C, Oeser B, Pearson M, Poulain J, Poussereau N, Quesneville H, Rascle C, Schumacher J, Ségurens B, Sexton A, Silva E, Sirven C, Soanes DM, Talbot NJ, Templeton M, Yandava C, Yarden O, Zeng Q, Rollins JA, Lebrun MH, Dickman M.

PLoS Genet. 2011 Aug;7(8):e1002230. doi: 10.1371/journal.pgen.1002230. Epub 2011 Aug 18.

29.

Kinesin-3 and dynein cooperate in long-range retrograde endosome motility along a nonuniform microtubule array.

Schuster M, Kilaru S, Fink G, Collemare J, Roger Y, Steinberg G.

Mol Biol Cell. 2011 Oct;22(19):3645-57. doi: 10.1091/mbc.E11-03-0217. Epub 2011 Aug 10.

30.

Genome expansion and gene loss in powdery mildew fungi reveal tradeoffs in extreme parasitism.

Spanu PD, Abbott JC, Amselem J, Burgis TA, Soanes DM, Stüber K, Ver Loren van Themaat E, Brown JK, Butcher SA, Gurr SJ, Lebrun MH, Ridout CJ, Schulze-Lefert P, Talbot NJ, Ahmadinejad N, Ametz C, Barton GR, Benjdia M, Bidzinski P, Bindschedler LV, Both M, Brewer MT, Cadle-Davidson L, Cadle-Davidson MM, Collemare J, Cramer R, Frenkel O, Godfrey D, Harriman J, Hoede C, King BC, Klages S, Kleemann J, Knoll D, Koti PS, Kreplak J, López-Ruiz FJ, Lu X, Maekawa T, Mahanil S, Micali C, Milgroom MG, Montana G, Noir S, O'Connell RJ, Oberhaensli S, Parlange F, Pedersen C, Quesneville H, Reinhardt R, Rott M, Sacristán S, Schmidt SM, Schön M, Skamnioti P, Sommer H, Stephens A, Takahara H, Thordal-Christensen H, Vigouroux M, Wessling R, Wicker T, Panstruga R.

Science. 2010 Dec 10;330(6010):1543-6. doi: 10.1126/science.1194573.

31.

Magnaporthe grisea avirulence gene ACE1 belongs to an infection-specific gene cluster involved in secondary metabolism.

Collemare J, Pianfetti M, Houlle AE, Morin D, Camborde L, Gagey MJ, Barbisan C, Fudal I, Lebrun MH, Böhnert HU.

New Phytol. 2008;179(1):196-208. doi: 10.1111/j.1469-8137.2008.02459.x. Epub 2008 Apr 22.

32.

Biosynthesis of secondary metabolites in the rice blast fungus Magnaporthe grisea: the role of hybrid PKS-NRPS in pathogenicity.

Collemare J, Billard A, Böhnert HU, Lebrun MH.

Mycol Res. 2008 Feb;112(Pt 2):207-15. doi: 10.1016/j.mycres.2007.08.003. Epub 2007 Aug 17. Review.

PMID:
18272356
33.

Evidence for horizontal transfer of a secondary metabolite gene cluster between fungi.

Khaldi N, Collemare J, Lebrun MH, Wolfe KH.

Genome Biol. 2008 Jan 24;9(1):R18. doi: 10.1186/gb-2008-9-1-r18.

34.

Improved gene targeting in Magnaporthe grisea by inactivation of MgKU80 required for non-homologous end joining.

Villalba F, Collemare J, Landraud P, Lambou K, Brozek V, Cirer B, Morin D, Bruel C, Beffa R, Lebrun MH.

Fungal Genet Biol. 2008 Jan;45(1):68-75. Epub 2007 Jul 10.

PMID:
17716934
35.

Expression of Magnaporthe grisea avirulence gene ACE1 is connected to the initiation of appressorium-mediated penetration.

Fudal I, Collemare J, Böhnert HU, Melayah D, Lebrun MH.

Eukaryot Cell. 2007 Mar;6(3):546-54. Epub 2006 Dec 1.

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