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Items: 1 to 50 of 206

1.

Integrated Transcriptomic, Phenotypic, and Functional Study Reveals Tissue-Specific Immune Properties of Mesenchymal Stromal Cells.

Ménard C, Dulong J, Roulois D, Hébraud B, Verdière L, Pangault C, Sibut V, Bezier I, Bescher N, Monvoisin C, Gadelorge M, Bertheuil N, Flécher E, Casteilla L, Collas P, Sensebé L, Bourin P, Espagnolle N, Tarte K.

Stem Cells. 2019 Sep 10. doi: 10.1002/stem.3077. [Epub ahead of print]

2.

Lamin A/C deficiency in CD4+ T-cells enhances regulatory T-cells and prevents inflammatory bowel disease.

Toribio-Fernández R, Herrero-Fernández B, Zorita V, López JA, Vázquez J, Criado G, Pablos JL, Collas P, Sánchez-Madrid F, Andrés V, Gonzalez-Granado JM.

J Pathol. 2019 Aug 1. doi: 10.1002/path.5332. [Epub ahead of print]

PMID:
31372995
3.

Finding Friends in the Crowd: Three-Dimensional Cliques of Topological Genomic Domains.

Collas P, Liyakat Ali TM, Brunet A, Germier T.

Front Genet. 2019 Jun 19;10:602. doi: 10.3389/fgene.2019.00602. eCollection 2019. Review.

4.

Long-range interactions between topologically associating domains shape the four-dimensional genome during differentiation.

Paulsen J, Liyakat Ali TM, Nekrasov M, Delbarre E, Baudement MO, Kurscheid S, Tremethick D, Collas P.

Nat Genet. 2019 May;51(5):835-843. doi: 10.1038/s41588-019-0392-0. Epub 2019 Apr 22.

PMID:
31011212
5.

PML modulates H3.3 targeting to telomeric and centromeric repeats in mouse fibroblasts.

Spirkoski J, Shah A, Reiner AH, Collas P, Delbarre E.

Biochem Biophys Res Commun. 2019 Apr 16;511(4):882-888. doi: 10.1016/j.bbrc.2019.02.087. Epub 2019 Mar 5.

PMID:
30850162
6.

Interplay of lamin A and lamin B LADs on the radial positioning of chromatin.

Forsberg F, Brunet A, Ali TML, Collas P.

Nucleus. 2019 Dec;10(1):7-20. doi: 10.1080/19491034.2019.1570810.

7.

Lamin A, Chromatin and FPLD2: Not Just a Peripheral Ménage-à-Trois.

Briand N, Cahyani I, Madsen-Østerbye J, Paulsen J, Rønningen T, Sørensen AL, Collas P.

Front Cell Dev Biol. 2018 Jul 9;6:73. doi: 10.3389/fcell.2018.00073. eCollection 2018. Review.

8.

Computational 3D genome modeling using Chrom3D.

Paulsen J, Liyakat Ali TM, Collas P.

Nat Protoc. 2018 May;13(5):1137-1152. doi: 10.1038/nprot.2018.009. Epub 2018 Apr 26.

PMID:
29700484
9.

OPA1-anchored PKA phosphorylates perilipin 1 on S522 and S497 in adipocytes differentiated from human adipose stem cells.

Rogne M, Chu DT, Küntziger TM, Mylonakou MN, Collas P, Tasken K.

Mol Biol Cell. 2018 Jun 15;29(12):1487-1501. doi: 10.1091/mbc.E17-09-0538. Epub 2018 Apr 24.

10.

Ribosomal DNA copy loss and repeat instability in ATRX-mutated cancers.

Udugama M, Sanij E, Voon HPJ, Son J, Hii L, Henson JD, Chan FL, Chang FTM, Liu Y, Pearson RB, Kalitsis P, Mann JR, Collas P, Hannan RD, Wong LH.

Proc Natl Acad Sci U S A. 2018 May 1;115(18):4737-4742. doi: 10.1073/pnas.1720391115. Epub 2018 Apr 18.

11.

Laminopathy-causing lamin A mutations reconfigure lamina-associated domains and local spatial chromatin conformation.

Briand N, Collas P.

Nucleus. 2018 Jan 1;9(1):216-226. doi: 10.1080/19491034.2018.1449498. Review.

12.

Inhibition of Endothelial NOTCH1 Signaling Attenuates Inflammation by Reducing Cytokine-Mediated Histone Acetylation at Inflammatory Enhancers.

Poulsen LC, Edelmann RJ, Krüger S, Diéguez-Hurtado R, Shah A, Stav-Noraas TE, Renzi A, Szymanska M, Wang J, Ehling M, Benedito R, Kasprzycka M, Bækkevold E, Sundnes O, Midwood KS, Scott H, Collas P, Siebel CW, Adams RH, Haraldsen G, Sundlisæter E, Hol J.

Arterioscler Thromb Vasc Biol. 2018 Apr;38(4):854-869. doi: 10.1161/ATVBAHA.117.310388. Epub 2018 Feb 15.

PMID:
29449332
13.

The lipodystrophic hotspot lamin A p.R482W mutation deregulates the mesodermal inducer T/Brachyury and early vascular differentiation gene networks.

Briand N, Guénantin AC, Jeziorowska D, Shah A, Mantecon M, Capel E, Garcia M, Oldenburg A, Paulsen J, Hulot JS, Vigouroux C, Collas P.

Hum Mol Genet. 2018 Apr 15;27(8):1447-1459. doi: 10.1093/hmg/ddy055.

PMID:
29438482
14.

Cohesin facilitates zygotic genome activation in zebrafish.

Meier M, Grant J, Dowdle A, Thomas A, Gerton J, Collas P, O'Sullivan JM, Horsfield JA.

Development. 2018 Jan 3;145(1). pii: dev156521. doi: 10.1242/dev.156521.

15.

TLR9 stimulation of B-cells induces transcription of p53 and prevents spontaneous and irradiation-induced cell death independent of DNA damage responses. Implications for Common variable immunodeficiency.

Holm KL, Syljuåsen RG, Hasvold G, Alsøe L, Nilsen H, Ivanauskiene K, Collas P, Shaposhnikov S, Collins A, Indrevær RL, Aukrust P, Fevang B, Blomhoff HK.

PLoS One. 2017 Oct 3;12(10):e0185708. doi: 10.1371/journal.pone.0185708. eCollection 2017.

16.

Carcinogen susceptibility is regulated by genome architecture and predicts cancer mutagenesis.

García-Nieto PE, Schwartz EK, King DA, Paulsen J, Collas P, Herrera RE, Morrison AJ.

EMBO J. 2017 Oct 2;36(19):2829-2843. doi: 10.15252/embj.201796717. Epub 2017 Aug 16.

17.

A lipodystrophy-causing lamin A mutant alters conformation and epigenetic regulation of the anti-adipogenic MIR335 locus.

Oldenburg A, Briand N, Sørensen AL, Cahyani I, Shah A, Moskaug JØ, Collas P.

J Cell Biol. 2017 Sep 4;216(9):2731-2743. doi: 10.1083/jcb.201701043. Epub 2017 Jul 27.

18.

AKAP95 interacts with nucleoporin TPR in mitosis and is important for the spindle assembly checkpoint.

López-Soop G, Rønningen T, Rogala A, Richartz N, Blomhoff HK, Thiede B, Collas P, Küntziger T.

Cell Cycle. 2017 May 19;16(10):947-956. doi: 10.1080/15384101.2017.1310350. Epub 2017 Apr 5.

19.

PML protein organizes heterochromatin domains where it regulates histone H3.3 deposition by ATRX/DAXX.

Delbarre E, Ivanauskiene K, Spirkoski J, Shah A, Vekterud K, Moskaug JØ, Bøe SO, Wong LH, Küntziger T, Collas P.

Genome Res. 2017 Jun;27(6):913-921. doi: 10.1101/gr.215830.116. Epub 2017 Mar 24.

20.

H3.Y discriminates between HIRA and DAXX chaperone complexes and reveals unexpected insights into human DAXX-H3.3-H4 binding and deposition requirements.

Zink LM, Delbarre E, Eberl HC, Keilhauer EC, Bönisch C, Pünzeler S, Bartkuhn M, Collas P, Mann M, Hake SB.

Nucleic Acids Res. 2017 Jun 2;45(10):5691-5706. doi: 10.1093/nar/gkx131.

21.

Functional Human Beige Adipocytes From Induced Pluripotent Stem Cells.

Guénantin AC, Briand N, Capel E, Dumont F, Morichon R, Provost C, Stillitano F, Jeziorowska D, Siffroi JP, Hajjar RJ, Fève B, Hulot JS, Collas P, Capeau J, Vigouroux C.

Diabetes. 2017 Jun;66(6):1470-1478. doi: 10.2337/db16-1107. Epub 2017 Mar 7.

22.

Chrom3D: three-dimensional genome modeling from Hi-C and nuclear lamin-genome contacts.

Paulsen J, Sekelja M, Oldenburg AR, Barateau A, Briand N, Delbarre E, Shah A, Sørensen AL, Vigouroux C, Buendia B, Collas P.

Genome Biol. 2017 Jan 30;18(1):21. doi: 10.1186/s13059-016-1146-2.

23.
24.

Erratum: Acoustic levitation in the presence of gravity [J. Acoust. Soc. Am. 86(2), 777-787 (1989)].

Barmatz MB, Collas P.

J Acoust Soc Am. 2016 Nov;140(5):3518. No abstract available.

PMID:
27908043
25.

Localized Movement and Levels of 53BP1 Protein Are Changed by γ-irradiation in PML Deficient Cells.

Legartová S, Sehnalová P, Malyšková B, Küntziger T, Collas P, Cmarko D, Raška I, Sorokin DV, Kozubek S, Bártová E.

J Cell Biochem. 2016 Nov;117(11):2583-96. doi: 10.1002/jcb.25551. Epub 2016 Aug 16.

PMID:
27526954
26.

STAMP2 is required for human adipose-derived stem cell differentiation and adipocyte-facilitated prostate cancer growth in vivo.

Lindstad T, Qu S, Sikkeland J, Jin Y, Kristian A, Mælandsmo GM, Collas P, Saatcioglu F.

Oncotarget. 2016 Aug 9;8(54):91817-91827. doi: 10.18632/oncotarget.11131. eCollection 2017 Nov 3.

27.

H3K27me3 Does Not Orchestrate the Expression of Lineage-Specific Markers in hESC-Derived Hepatocytes In Vitro.

Vanhove J, Pistoni M, Welters M, Eggermont K, Vanslembrouck V, Helsen N, Boon R, Najimi M, Sokal E, Collas P, Voncken JW, Verfaillie CM.

Stem Cell Reports. 2016 Aug 9;7(2):192-206. doi: 10.1016/j.stemcr.2016.06.013. Epub 2016 Jul 28.

28.

Mapping Nuclear Lamin-Genome Interactions by Chromatin Immunoprecipitation of Nuclear Lamins.

Oldenburg AR, Collas P.

Methods Mol Biol. 2016;1411:315-24. doi: 10.1007/978-1-4939-3530-7_20.

PMID:
27147051
29.

4D nucleomes in single cells: what can computational modeling reveal about spatial chromatin conformation?

Sekelja M, Paulsen J, Collas P.

Genome Biol. 2016 Apr 7;17:54. doi: 10.1186/s13059-016-0923-2. Review.

30.

Compromised Telomeric Heterochromatin Promotes ALTernative Lengthening of Telomeres.

Voon HPJ, Collas P, Wong LH.

Trends Cancer. 2016 Mar;2(3):114-116. doi: 10.1016/j.trecan.2016.02.003. Epub 2016 Mar 4.

PMID:
28741530
31.

Embryo Aggregation in Pig Improves Cloning Efficiency and Embryo Quality.

Buemo CP, Gambini A, Moro LN, Hiriart MI, Fernández-Martín R, Collas P, Salamone DF.

PLoS One. 2016 Feb 19;11(2):e0146390. doi: 10.1371/journal.pone.0146390. eCollection 2016.

32.

A-kinase anchoring protein AKAP95 is a novel regulator of ribosomal RNA synthesis.

Marstad A, Landsverk OJ, Strømme O, Otterlei M, Collas P, Sundan A, Brede G.

FEBS J. 2016 Feb;283(4):757-70. doi: 10.1111/febs.13630. Epub 2016 Jan 16.

33.

Epigenetic priming of inflammatory response genes by high glucose in adipose progenitor cells.

Rønningen T, Shah A, Reiner AH, Collas P, Moskaug JØ.

Biochem Biophys Res Commun. 2015 Nov 27;467(4):979-86. doi: 10.1016/j.bbrc.2015.10.030. Epub 2015 Oct 14.

PMID:
26462465
34.

Prepatterning of differentiation-driven nuclear lamin A/C-associated chromatin domains by GlcNAcylated histone H2B.

Rønningen T, Shah A, Oldenburg AR, Vekterud K, Delbarre E, Moskaug JØ, Collas P.

Genome Res. 2015 Dec;25(12):1825-35. doi: 10.1101/gr.193748.115. Epub 2015 Sep 10.

35.

Genome-wide analysis of DNA methylation and gene expression patterns in purified, uncultured human liver cells and activated hepatic stellate cells.

El Taghdouini A, Sørensen AL, Reiner AH, Coll M, Verhulst S, Mannaerts I, Øie CI, Smedsrød B, Najimi M, Sokal E, Luttun A, Sancho-Bru P, Collas P, van Grunsven LA.

Oncotarget. 2015 Sep 29;6(29):26729-45. doi: 10.18632/oncotarget.4925.

36.

Histone variant H3.3 provides the heterochromatic H3 lysine 9 tri-methylation mark at telomeres.

Udugama M, M Chang FT, Chan FL, Tang MC, Pickett HA, R McGhie JD, Mayne L, Collas P, Mann JR, Wong LH.

Nucleic Acids Res. 2015 Dec 2;43(21):10227-37. doi: 10.1093/nar/gkv847. Epub 2015 Aug 24.

37.

Manifold Based Optimization for Single-Cell 3D Genome Reconstruction.

Paulsen J, Gramstad O, Collas P.

PLoS Comput Biol. 2015 Aug 11;11(8):e1004396. doi: 10.1371/journal.pcbi.1004396. eCollection 2015 Aug.

38.

Transcription outcome of promoters enriched in histone variant H3.3 defined by positioning of H3.3 and local chromatin marks.

Lund EG, Collas P, Delbarre E.

Biochem Biophys Res Commun. 2015 May 1;460(2):348-53. doi: 10.1016/j.bbrc.2015.03.037. Epub 2015 Mar 14.

PMID:
25783056
39.

CHK1-driven histone H3.3 serine 31 phosphorylation is important for chromatin maintenance and cell survival in human ALT cancer cells.

Chang FT, Chan FL, R McGhie JD, Udugama M, Mayne L, Collas P, Mann JR, Wong LH.

Nucleic Acids Res. 2015 Mar 11;43(5):2603-14. doi: 10.1093/nar/gkv104. Epub 2015 Feb 17.

40.

Distinct features of lamin A-interacting chromatin domains mapped by ChIP-sequencing from sonicated or micrococcal nuclease-digested chromatin.

Lund EG, Duband-Goulet I, Oldenburg A, Buendia B, Collas P.

Nucleus. 2015;6(1):30-9. doi: 10.4161/19491034.2014.990855.

41.

A hyper-dynamic nature of bivalent promoter states underlies coordinated developmental gene expression modules.

Shah A, Oldenburg A, Collas P.

BMC Genomics. 2014 Dec 30;15:1186. doi: 10.1186/1471-2164-15-1186.

42.

The p.R482W substitution in A-type lamins deregulates SREBP1 activity in Dunnigan-type familial partial lipodystrophy.

Vadrot N, Duband-Goulet I, Cabet E, Attanda W, Barateau A, Vicart P, Gerbal F, Briand N, Vigouroux C, Oldenburg AR, Lund EG, Collas P, Buendia B.

Hum Mol Genet. 2015 Apr 1;24(7):2096-109. doi: 10.1093/hmg/ddu728. Epub 2014 Dec 18.

PMID:
25524705
43.

The specific alteration of histone methylation profiles by DZNep during early zebrafish development.

Ostrup O, Reiner AH, Aleström P, Collas P.

Biochim Biophys Acta. 2014 Nov;1839(11):1307-15. doi: 10.1016/j.bbagrm.2014.09.013. Epub 2014 Sep 28.

PMID:
25260724
44.

Methylation of bone SOST, its mRNA, and serum sclerostin levels correlate strongly with fracture risk in postmenopausal women.

Reppe S, Noer A, Grimholt RM, Halldórsson BV, Medina-Gomez C, Gautvik VT, Olstad OK, Berg JP, Datta H, Estrada K, Hofman A, Uitterlinden AG, Rivadeneira F, Lyle R, Collas P, Gautvik KM.

J Bone Miner Res. 2015 Feb;30(2):249-56. doi: 10.1002/jbmr.2342.

45.

The PML-associated protein DEK regulates the balance of H3.3 loading on chromatin and is important for telomere integrity.

Ivanauskiene K, Delbarre E, McGhie JD, Küntziger T, Wong LH, Collas P.

Genome Res. 2014 Oct;24(10):1584-94. doi: 10.1101/gr.173831.114. Epub 2014 Jul 21.

46.

Browning of white adipose cells by intermediate metabolites: an adaptive mechanism to alleviate redox pressure.

Carrière A, Jeanson Y, Berger-Müller S, André M, Chenouard V, Arnaud E, Barreau C, Walther R, Galinier A, Wdziekonski B, Villageois P, Louche K, Collas P, Moro C, Dani C, Villarroya F, Casteilla L.

Diabetes. 2014 Oct;63(10):3253-65. doi: 10.2337/db13-1885. Epub 2014 May 1.

47.

Enriched domain detector: a program for detection of wide genomic enrichment domains robust against local variations.

Lund E, Oldenburg AR, Collas P.

Nucleic Acids Res. 2014 Jun;42(11):e92. doi: 10.1093/nar/gku324. Epub 2014 Apr 29.

48.

Normalization of RNA-sequencing data from samples with varying mRNA levels.

Aanes H, Winata C, Moen LF, Østrup O, Mathavan S, Collas P, Rognes T, Aleström P.

PLoS One. 2014 Feb 25;9(2):e89158. doi: 10.1371/journal.pone.0089158. eCollection 2014.

49.

Transcriptome dynamics and diversity in the early zebrafish embryo.

Aanes H, Collas P, Aleström P.

Brief Funct Genomics. 2014 Mar;13(2):95-105. doi: 10.1093/bfgp/elt049. Epub 2013 Dec 12. Review.

PMID:
24335756
50.

Closing the (nuclear) envelope on the genome: how nuclear lamins interact with promoters and modulate gene expression.

Collas P, Lund EG, Oldenburg AR.

Bioessays. 2014 Jan;36(1):75-83. doi: 10.1002/bies.201300138. Epub 2013 Nov 24. Review.

PMID:
24272858

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