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Items: 22

1.

Comparative Metabolomics of Early Development of the Parasitic Plants Phelipanche aegyptiaca and Triphysaria versicolor.

Clermont K, Wang Y, Liu S, Yang Z, dePamphilis CW, Yoder JI, Collakova E, Westwood JH.

Metabolites. 2019 Jun 13;9(6). pii: E114. doi: 10.3390/metabo9060114.

2.

MALDI-MS Imaging of Urushiols in Poison Ivy Stem.

Aziz M, Sturtevant D, Winston J, Collakova E, Jelesko JG, Chapman KD.

Molecules. 2017 Apr 29;22(5). pii: E711. doi: 10.3390/molecules22050711.

3.

A Machine Learning Approach to Predict Gene Regulatory Networks in Seed Development in Arabidopsis.

Ni Y, Aghamirzaie D, Elmarakeby H, Collakova E, Li S, Grene R, Heath LS.

Front Plant Sci. 2016 Dec 23;7:1936. doi: 10.3389/fpls.2016.01936. eCollection 2016.

4.

UMAMIT14 is an amino acid exporter involved in phloem unloading in Arabidopsis roots.

Besnard J, Pratelli R, Zhao C, Sonawala U, Collakova E, Pilot G, Okumoto S.

J Exp Bot. 2016 Dec;67(22):6385-6397.

5.

CoSpliceNet: a framework for co-splicing network inference from transcriptomics data.

Aghamirzaie D, Collakova E, Li S, Grene R.

BMC Genomics. 2016 Oct 28;17(1):845.

6.

Potential targets of VIVIPAROUS1/ABI3-LIKE1 (VAL1) repression in developing Arabidopsis thaliana embryos.

Schneider A, Aghamirzaie D, Elmarakeby H, Poudel AN, Koo AJ, Heath LS, Grene R, Collakova E.

Plant J. 2016 Jan;85(2):305-19. doi: 10.1111/tpj.13106.

7.

Transcriptome-wide functional characterization reveals novel relationships among differentially expressed transcripts in developing soybean embryos.

Aghamirzaie D, Batra D, Heath LS, Schneider A, Grene R, Collakova E.

BMC Genomics. 2015 Nov 14;16:928. doi: 10.1186/s12864-015-2108-x.

8.

Characterization of the inositol monophosphatase gene family in Arabidopsis.

Nourbakhsh A, Collakova E, Gillaspy GE.

Front Plant Sci. 2015 Jan 9;5:725. doi: 10.3389/fpls.2014.00725. eCollection 2014.

9.

Near-real-time analysis of the phenotypic responses of Escherichia coli to 1-butanol exposure using Raman Spectroscopy.

Zu TN, Athamneh AI, Wallace RS, Collakova E, Senger RS.

J Bacteriol. 2014 Dec;196(23):3983-91. doi: 10.1128/JB.01590-14. Epub 2014 Aug 25.

10.

Evidence for extensive heterotrophic metabolism, antioxidant action, and associated regulatory events during winter hardening in Sitka spruce.

Collakova E, Klumas C, Suren H, Myers E, Heath LS, Holliday JA, Grene R.

BMC Plant Biol. 2013 Apr 30;13:72. doi: 10.1186/1471-2229-13-72.

11.

Metabolic and Transcriptional Reprogramming in Developing Soybean (Glycine max) Embryos.

Collakova E, Aghamirzaie D, Fang Y, Klumas C, Tabataba F, Kakumanu A, Myers E, Heath LS, Grene R.

Metabolites. 2013 May 14;3(2):347-72. doi: 10.3390/metabo3020347.

12.

Changes in RNA Splicing in Developing Soybean (Glycine max) Embryos.

Aghamirzaie D, Nabiyouni M, Fang Y, Klumas C, Heath LS, Grene R, Collakova E.

Biology (Basel). 2013 Nov 21;2(4):1311-37. doi: 10.3390/biology2041311.

13.

Mining and visualization of microarray and metabolomic data reveal extensive cell wall remodeling during winter hardening in Sitka spruce (Picea sitchensis).

Grene R, Klumas C, Suren H, Yang K, Collakova E, Myers E, Heath LS, Holliday JA.

Front Plant Sci. 2012 Oct 29;3:241. doi: 10.3389/fpls.2012.00241. eCollection 2012.

14.

Are we ready for genome-scale modeling in plants?

Collakova E, Yen JY, Senger RS.

Plant Sci. 2012 Aug;191-192:53-70. doi: 10.1016/j.plantsci.2012.04.010. Epub 2012 May 3. Review.

15.

Arabidopsis 10-formyl tetrahydrofolate deformylases are essential for photorespiration.

Collakova E, Goyer A, Naponelli V, Krassovskaya I, Gregory JF 3rd, Hanson AD, Shachar-Hill Y.

Plant Cell. 2008 Jul;20(7):1818-32. doi: 10.1105/tpc.108.058701. Epub 2008 Jul 15.

16.

Functional characterization of a methionine gamma-lyase in Arabidopsis and its implication in an alternative to the reverse trans-sulfuration pathway.

Goyer A, Collakova E, Shachar-Hill Y, Hanson AD.

Plant Cell Physiol. 2007 Feb;48(2):232-42. Epub 2006 Dec 13.

PMID:
17169919
17.

5-Formyltetrahydrofolate is an inhibitory but well tolerated metabolite in Arabidopsis leaves.

Goyer A, Collakova E, Díaz de la Garza R, Quinlivan EP, Williamson J, Gregory JF 3rd, Shachar-Hill Y, Hanson AD.

J Biol Chem. 2005 Jul 15;280(28):26137-42. Epub 2005 May 11.

18.

Characterization and metabolic function of a peroxisomal sarcosine and pipecolate oxidase from Arabidopsis.

Goyer A, Johnson TL, Olsen LJ, Collakova E, Shachar-Hill Y, Rhodes D, Hanson AD.

J Biol Chem. 2004 Apr 23;279(17):16947-53. Epub 2004 Feb 6.

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