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Testing an Age-old Adage: Can Autopsy Findings be of Assistance in Differentiating Opioid Versus Cardiac Deaths?

Molina DK, Vance K, Coleman ML, Hargrove VM.

J Forensic Sci. 2019 Sep 4. doi: 10.1111/1556-4029.14174. [Epub ahead of print]


An Anesthesiologist in the Space Race: The Life and Career of Dr. Cloid D. Green.

Coleman ML.

J Anesth Hist. 2019 Apr;5(2):44-48. doi: 10.1016/j.janh.2019.02.006. Epub 2019 Mar 7.


Nitrogen sourcing during viral infection of marine cyanobacteria.

Waldbauer JR, Coleman ML, Rizzo AI, Campbell KL, Lotus J, Zhang L.

Proc Natl Acad Sci U S A. 2019 Jul 30;116(31):15590-15595. doi: 10.1073/pnas.1901856116. Epub 2019 Jul 15.


Systemic silencing of PHD2 causes reversible immune regulatory dysfunction.

Yamamoto A, Hester J, Macklin PS, Kawai K, Uchiyama M, Biggs D, Bishop T, Bull K, Cheng X, Cawthorne E, Coleman ML, Crockford TL, Davies B, Dow LE, Goldin R, Kranc K, Kudo H, Lawson H, McAuliffe J, Milward K, Scudamore CL, Soilleux E, Issa F, Ratcliffe PJ, Pugh CW.

J Clin Invest. 2019 Jun 4;130:3640-3656. doi: 10.1172/JCI124099.


Myc-induced nuclear antigen constrains a latent intestinal epithelial cell-intrinsic anthelmintic pathway.

Pillai MR, Mihi B, Ishiwata K, Nakamura K, Sakuragi N, Finkelstein DB, McGargill MA, Nakayama T, Ayabe T, Coleman ML, Bix M.

PLoS One. 2019 Feb 26;14(2):e0211244. doi: 10.1371/journal.pone.0211244. eCollection 2019.


Reevaluating the Salty Divide: Phylogenetic Specificity of Transitions between Marine and Freshwater Systems.

Paver SF, Muratore D, Newton RJ, Coleman ML.

mSystems. 2018 Nov 13;3(6). pii: e00232-18. doi: 10.1128/mSystems.00232-18. eCollection 2018 Nov-Dec.


Genome-scale fitness profile of Caulobacter crescentus grown in natural freshwater.

Hentchel KL, Reyes Ruiz LM, Curtis PD, Fiebig A, Coleman ML, Crosson S.

ISME J. 2019 Feb;13(2):523-536. doi: 10.1038/s41396-018-0295-6. Epub 2018 Oct 8.


The emerging roles of ribosomal histidyl hydroxylases in cell biology, physiology and disease.

Bundred JR, Hendrix E, Coleman ML.

Cell Mol Life Sci. 2018 Nov;75(22):4093-4105. doi: 10.1007/s00018-018-2903-z. Epub 2018 Aug 27. Review.


Distinct molecular signatures in dissolved organic matter produced by viral lysis of marine cyanobacteria.

Ma X, Coleman ML, Waldbauer JR.

Environ Microbiol. 2018 Aug;20(8):3001-3011. doi: 10.1111/1462-2920.14338. Epub 2018 Sep 10.


Publisher Correction: The Jumonji-C oxygenase JMJD7 catalyzes (3S)-lysyl hydroxylation of TRAFAC GTPases.

Markolovic S, Zhuang Q, Wilkins SE, Eaton CD, Abboud MI, Katz MJ, McNeil HE, Leśniak RK, Hall C, Struwe WB, Konietzny R, Davis S, Yang M, Ge W, Benesch JLP, Kessler BM, Ratcliffe PJ, Cockman ME, Fischer R, Wappner P, Chowdhury R, Coleman ML, Schofield CJ.

Nat Chem Biol. 2018 Oct;14(10):988. doi: 10.1038/s41589-018-0104-6.


The Jumonji-C oxygenase JMJD7 catalyzes (3S)-lysyl hydroxylation of TRAFAC GTPases.

Markolovic S, Zhuang Q, Wilkins SE, Eaton CD, Abboud MI, Katz MJ, McNeil HE, Leśniak RK, Hall C, Struwe WB, Konietzny R, Davis S, Yang M, Ge W, Benesch JLP, Kessler BM, Ratcliffe PJ, Cockman ME, Fischer R, Wappner P, Chowdhury R, Coleman ML, Schofield CJ.

Nat Chem Biol. 2018 Jul;14(7):688-695. doi: 10.1038/s41589-018-0071-y. Epub 2018 Jun 18. Erratum in: Nat Chem Biol. 2018 Jun 27;:.


Transcriptional responses of the marine green alga Micromonas pusilla and an infecting prasinovirus under different phosphate conditions.

Bachy C, Charlesworth CJ, Chan AM, Finke JF, Wong CH, Wei CL, Sudek S, Coleman ML, Suttle CA, Worden AZ.

Environ Microbiol. 2018 Aug;20(8):2898-2912. doi: 10.1111/1462-2920.14273. Epub 2018 Sep 9.


Visualizing Adsorption of Cyanophage P-SSP7 onto Marine Prochlorococcus.

Murata K, Zhang Q, Gerardo Galaz-Montoya J, Fu C, Coleman ML, Osburne MS, Schmid MF, Sullivan MB, Chisholm SW, Chiu W.

Sci Rep. 2017 Mar 10;7:44176. doi: 10.1038/srep44176.


Evaluation of Three-Dimensional Printed Materials for Simulation by Computed Tomography and Ultrasound Imaging.

Mooney JJ, Sarwani N, Coleman ML, Fotos JS.

Simul Healthc. 2017 Jun;12(3):182-188. doi: 10.1097/SIH.0000000000000217.


Towards quantitative viromics for both double-stranded and single-stranded DNA viruses.

Roux S, Solonenko NE, Dang VT, Poulos BT, Schwenck SM, Goldsmith DB, Coleman ML, Breitbart M, Sullivan MB.

PeerJ. 2016 Dec 8;4:e2777. doi: 10.7717/peerj.2777. eCollection 2016.


Disturbance Regimes Predictably Alter Diversity in an Ecologically Complex Bacterial System.

Gibbons SM, Scholz M, Hutchison AL, Dinner AR, Gilbert JA, Coleman ML.

MBio. 2016 Dec 20;7(6). pii: e01372-16. doi: 10.1128/mBio.01372-16.


Marketing "Compound Oxygen" for Medicinal Use: Not Your Mother's Laughing Gas.

Coleman ML, Bause GS.

J Anesth Hist. 2016 Oct;2(4):157-158. doi: 10.1016/j.janh.2016.05.001. Epub 2016 May 13. No abstract available.


Modifying the maker: Oxygenases target ribosome biology.

Zhuang Q, Feng T, Coleman ML.

Translation (Austin). 2015 Feb 3;3(1):e1009331. doi: 10.1080/21690731.2015.1009331. eCollection 2015 Jan-Jun.


Divergent responses of viral and bacterial communities in the gut microbiome to dietary disturbances in mice.

Howe A, Ringus DL, Williams RJ, Choo ZN, Greenwald SM, Owens SM, Coleman ML, Meyer F, Chang EB.

ISME J. 2016 May;10(5):1217-27. doi: 10.1038/ismej.2015.183. Epub 2015 Oct 16.


OH, the Places You'll Go! Hydroxylation, Gene Expression, and Cancer.

Ploumakis A, Coleman ML.

Mol Cell. 2015 Jun 4;58(5):729-41. doi: 10.1016/j.molcel.2015.05.026. Review.


A multitrophic model to quantify the effects of marine viruses on microbial food webs and ecosystem processes.

Weitz JS, Stock CA, Wilhelm SW, Bourouiba L, Coleman ML, Buchan A, Follows MJ, Fuhrman JA, Jover LF, Lennon JT, Middelboe M, Sonderegger DL, Suttle CA, Taylor BP, Frede Thingstad T, Wilson WH, Eric Wommack K.

ISME J. 2015 Jun;9(6):1352-64. doi: 10.1038/ismej.2014.220. Epub 2015 Jan 30.


Human and environmental impacts on river sediment microbial communities.

Gibbons SM, Jones E, Bearquiver A, Blackwolf F, Roundstone W, Scott N, Hooker J, Madsen R, Coleman ML, Gilbert JA.

PLoS One. 2014 May 19;9(5):e97435. doi: 10.1371/journal.pone.0097435. eCollection 2014.


OGFOD1 catalyzes prolyl hydroxylation of RPS23 and is involved in translation control and stress granule formation.

Singleton RS, Liu-Yi P, Formenti F, Ge W, Sekirnik R, Fischer R, Adam J, Pollard PJ, Wolf A, Thalhammer A, Loenarz C, Flashman E, Yamamoto A, Coleman ML, Kessler BM, Wappner P, Schofield CJ, Ratcliffe PJ, Cockman ME.

Proc Natl Acad Sci U S A. 2014 Mar 18;111(11):4031-6. doi: 10.1073/pnas.1314482111. Epub 2014 Feb 18.


Optimal translational termination requires C4 lysyl hydroxylation of eRF1.

Feng T, Yamamoto A, Wilkins SE, Sokolova E, Yates LA, Münzel M, Singh P, Hopkinson RJ, Fischer R, Cockman ME, Shelley J, Trudgian DC, Schödel J, McCullagh JS, Ge W, Kessler BM, Gilbert RJ, Frolova LY, Alkalaeva E, Ratcliffe PJ, Schofield CJ, Coleman ML.

Mol Cell. 2014 Feb 20;53(4):645-54. doi: 10.1016/j.molcel.2013.12.028. Epub 2014 Jan 30.


Diverse capacity for 2-methylhopanoid production correlates with a specific ecological niche.

Ricci JN, Coleman ML, Welander PV, Sessions AL, Summons RE, Spear JR, Newman DK.

ISME J. 2014 Mar;8(3):675-84. doi: 10.1038/ismej.2013.191. Epub 2013 Oct 24.


Iron and copper act synergistically to delay anaerobic growth of bacteria.

Bird LJ, Coleman ML, Newman DK.

Appl Environ Microbiol. 2013 Jun;79(12):3619-27. doi: 10.1128/AEM.03944-12. Epub 2013 Apr 5.


Dynamic regulatory network controlling TH17 cell differentiation.

Yosef N, Shalek AK, Gaublomme JT, Jin H, Lee Y, Awasthi A, Wu C, Karwacz K, Xiao S, Jorgolli M, Gennert D, Satija R, Shakya A, Lu DY, Trombetta JJ, Pillai MR, Ratcliffe PJ, Coleman ML, Bix M, Tantin D, Park H, Kuchroo VK, Regev A.

Nature. 2013 Apr 25;496(7446):461-8. doi: 10.1038/nature11981. Epub 2013 Mar 6.


Oxygenase-catalyzed ribosome hydroxylation occurs in prokaryotes and humans.

Ge W, Wolf A, Feng T, Ho CH, Sekirnik R, Zayer A, Granatino N, Cockman ME, Loenarz C, Loik ND, Hardy AP, Claridge TDW, Hamed RB, Chowdhury R, Gong L, Robinson CV, Trudgian DC, Jiang M, Mackeen MM, Mccullagh JS, Gordiyenko Y, Thalhammer A, Yamamoto A, Yang M, Liu-Yi P, Zhang Z, Schmidt-Zachmann M, Kessler BM, Ratcliffe PJ, Preston GM, Coleman ML, Schofield CJ.

Nat Chem Biol. 2012 Dec;8(12):960-962. doi: 10.1038/nchembio.1093. Epub 2012 Oct 28.


Transcriptome and proteome dynamics of a light-dark synchronized bacterial cell cycle.

Waldbauer JR, Rodrigue S, Coleman ML, Chisholm SW.

PLoS One. 2012;7(8):e43432. doi: 10.1371/journal.pone.0043432. Epub 2012 Aug 29.


BqsR/BqsS constitute a two-component system that senses extracellular Fe(II) in Pseudomonas aeruginosa.

Kreamer NN, Wilks JC, Marlow JJ, Coleman ML, Newman DK.

J Bacteriol. 2012 Mar;194(5):1195-204. doi: 10.1128/JB.05634-11. Epub 2011 Dec 22.


The RND-family transporter, HpnN, is required for hopanoid localization to the outer membrane of Rhodopseudomonas palustris TIE-1.

Doughty DM, Coleman ML, Hunter RC, Sessions AL, Summons RE, Newman DK.

Proc Natl Acad Sci U S A. 2011 Nov 8;108(45):E1045-51. doi: 10.1073/pnas.1104209108. Epub 2011 Aug 22.


Asparagine and aspartate hydroxylation of the cytoskeletal ankyrin family is catalyzed by factor-inhibiting hypoxia-inducible factor.

Yang M, Ge W, Chowdhury R, Claridge TD, Kramer HB, Schmierer B, McDonough MA, Gong L, Kessler BM, Ratcliffe PJ, Coleman ML, Schofield CJ.

J Biol Chem. 2011 Mar 4;286(9):7648-60. doi: 10.1074/jbc.M110.193540. Epub 2010 Dec 22.


The hypoxia-inducible transcription factor pathway regulates oxygen sensing in the simplest animal, Trichoplax adhaerens.

Loenarz C, Coleman ML, Boleininger A, Schierwater B, Holland PW, Ratcliffe PJ, Schofield CJ.

EMBO Rep. 2011 Jan;12(1):63-70. doi: 10.1038/embor.2010.170. Epub 2010 Nov 26.


Ecosystem-specific selection pressures revealed through comparative population genomics.

Coleman ML, Chisholm SW.

Proc Natl Acad Sci U S A. 2010 Oct 26;107(43):18634-9. doi: 10.1073/pnas.1009480107. Epub 2010 Oct 11.


Diverse styles of submarine venting on the ultraslow spreading Mid-Cayman Rise.

German CR, Bowen A, Coleman ML, Honig DL, Huber JA, Jakuba MV, Kinsey JC, Kurz MD, Leroy S, McDermott JM, de Lépinay BM, Nakamura K, Seewald JS, Smith JL, Sylva SP, Van Dover CL, Whitcomb LL, Yoerger DR.

Proc Natl Acad Sci U S A. 2010 Aug 10;107(32):14020-5. doi: 10.1073/pnas.1009205107. Epub 2010 Jul 21.


Small-molecule-based inhibition of histone demethylation in cells assessed by quantitative mass spectrometry.

Mackeen MM, Kramer HB, Chang KH, Coleman ML, Hopkinson RJ, Schofield CJ, Kessler BM.

J Proteome Res. 2010 Aug 6;9(8):4082-4092. doi: 10.1021/pr100269b.


Identification of a methylase required for 2-methylhopanoid production and implications for the interpretation of sedimentary hopanes.

Welander PV, Coleman ML, Sessions AL, Summons RE, Newman DK.

Proc Natl Acad Sci U S A. 2010 May 11;107(19):8537-42. doi: 10.1073/pnas.0912949107. Epub 2010 Apr 26.


PHF8, a gene associated with cleft lip/palate and mental retardation, encodes for an Nepsilon-dimethyl lysine demethylase.

Loenarz C, Ge W, Coleman ML, Rose NR, Cooper CD, Klose RJ, Ratcliffe PJ, Schofield CJ.

Hum Mol Genet. 2010 Jan 15;19(2):217-22. doi: 10.1093/hmg/ddp480. Epub 2009 Oct 19.


Hypoxia, hypoxia-inducible factors (HIF), HIF hydroxylases and oxygen sensing.

Webb JD, Coleman ML, Pugh CW.

Cell Mol Life Sci. 2009 Nov;66(22):3539-54. doi: 10.1007/s00018-009-0147-7. Epub 2009 Sep 12. Review.


Sprouty2 association with B-Raf is regulated by phosphorylation and kinase conformation.

Brady SC, Coleman ML, Munro J, Feller SM, Morrice NA, Olson MF.

Cancer Res. 2009 Sep 1;69(17):6773-81. doi: 10.1158/0008-5472.CAN-08-4447. Epub 2009 Aug 18.


Signalling cross talk of the HIF system: involvement of the FIH protein.

Coleman ML, Ratcliffe PJ.

Curr Pharm Des. 2009;15(33):3904-7. Review.


Controls on development and diversity of Early Archean stromatolites.

Allwood AC, Grotzinger JP, Knoll AH, Burch IW, Anderson MS, Coleman ML, Kanik I.

Proc Natl Acad Sci U S A. 2009 Jun 16;106(24):9548-55. doi: 10.1073/pnas.0903323106. Epub 2009 Jun 10.


Angiogenesis: escape from hypoxia.

Coleman ML, Ratcliffe PJ.

Nat Med. 2009 May;15(5):491-3. doi: 10.1038/nm0509-491. No abstract available.


Choreography of the transcriptome, photophysiology, and cell cycle of a minimal photoautotroph, prochlorococcus.

Zinser ER, Lindell D, Johnson ZI, Futschik ME, Steglich C, Coleman ML, Wright MA, Rector T, Steen R, McNulty N, Thompson LR, Chisholm SW.

PLoS One. 2009;4(4):e5135. doi: 10.1371/journal.pone.0005135. Epub 2009 Apr 8.


MYPT1, the targeting subunit of smooth-muscle myosin phosphatase, is a substrate for the asparaginyl hydroxylase factor inhibiting hypoxia-inducible factor (FIH).

Webb JD, Murányi A, Pugh CW, Ratcliffe PJ, Coleman ML.

Biochem J. 2009 May 13;420(2):327-33. doi: 10.1042/BJ20081905.


Asparagine beta-hydroxylation stabilizes the ankyrin repeat domain fold.

Kelly L, McDonough MA, Coleman ML, Ratcliffe PJ, Schofield CJ.

Mol Biosyst. 2009 Jan;5(1):52-8. doi: 10.1039/b815271c. Epub 2008 Oct 29.


The influence of neurophysiologic monitoring on the management of pediatric cardiopulmonary bypass.

Kimatian SJ, Saliba KJ, Soler X, Valentine EA, Coleman ML, Kunselman AR, Schuler HG, Barnes ML, Thirumala PD, Myers JL.

ASAIO J. 2008 Sep-Oct;54(5):467-9. doi: 10.1097/MAT.0b013e3181872d5b.


Portal protein diversity and phage ecology.

Sullivan MB, Coleman ML, Quinlivan V, Rosenkrantz JE, Defrancesco AS, Tan G, Fu R, Lee JA, Waterbury JB, Bielawski JP, Chisholm SW.

Environ Microbiol. 2008 Oct;10(10):2810-23. doi: 10.1111/j.1462-2920.2008.01702.x. Epub 2008 Jul 31. Erratum in: Environ Microbiol. 2011 Oct;13(10):2832.


Microbial community gene expression in ocean surface waters.

Frias-Lopez J, Shi Y, Tyson GW, Coleman ML, Schuster SC, Chisholm SW, Delong EF.

Proc Natl Acad Sci U S A. 2008 Mar 11;105(10):3805-10. doi: 10.1073/pnas.0708897105. Epub 2008 Mar 3.


Patterns and implications of gene gain and loss in the evolution of Prochlorococcus.

Kettler GC, Martiny AC, Huang K, Zucker J, Coleman ML, Rodrigue S, Chen F, Lapidus A, Ferriera S, Johnson J, Steglich C, Church GM, Richardson P, Chisholm SW.

PLoS Genet. 2007 Dec;3(12):e231.

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